|
|
Homology
BLAST of mRNA_C-linearis_contig86.16248.1 vs. uniprot
Match: A0A6H5KJX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX7_9PHAE) HSP 1 Score: 315 bits (808), Expect = 5.260e-91 Identity = 317/745 (42.55%), Postives = 398/745 (53.42%), Query Frame = 3
Query: 267 LEGLSRLLVRSCQVFTVASCVSALLGSLKSGYVEDMGMLWCTVPVWLACLWFVAEIALSFVRVRRVMLDEGRRRTLSVRRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGA---SAGTPRSRGGR------------PALARVTSSRMRRHISRGLS-----AXXXXXXXXXXXXXDKGEDDGEGWFGSDGS-------IGXXXXXXXXXXXXXXXWQ------------------MGTAGPPG-TPES-----QPRMAARPTASYSGGEDNDGDEGNKDDXYDYXXXXXXXXXXXXXXXXXXXSSAQGRDPRREVQISFLLQAWLRLWA--------TMVFSAVILAIFLTLLTLRLFGFQT--VSAGWIGSPCIIALAILALHSLLLLDGSGGFGGGPVMRGGGNRLVVGLGRRPFILLTLVSAVLVVLKVDSASAGTTTAGSTWAVAVLVGKVHWGFIFFPLWVMLFLIEVVFVVSLWENHTGVSLARSLGLFVGAAKEDHSGGVDGVDDLGRPGL-FCFCLNDSTGSCESNRRG----WLWWRGSGAKGEYGRLGEDDSGVGRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRRVELSPSQRAAASSIATGLFLLTMTVISVALGTSRDQASWGVPVTFVAAAAGLTMVGAGFVSLASAYDRVLRGPLPPIVKPLPVVFSERDGGWITGPPDPPVVTVFLLGDVVLRQE 2303
LE L LLVRSC VFT A C S L+G++K+G V + +WC +P LAC+WFV E+ S +RVRRVML E +R LSVRR R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A +AG + GG PAL SSR RRH SRG + A + ++ EGW S GS +G XXXXXXXXXXX + +GTA P T E +PR AA T + D DGD + + +++ G + + TM V L++F+ LL+LRL G + A WI SP ++AL +LALHSL++LDGSGG+GG PV++ GGNRLVV LGRRP ILLTL++AVLVVLK+DS AG + V + VHWG+ PLWV++ ++E V+V +LWEN+T SL GLF GGV + LG G FC CL G +G W WR + GE + G+DD + XXXXXXX VR+RVEL+PSQRAAA +I+ G LLT ++S+ G++ ++A+WGVP+T +AA G MVGAG LA A+DR +RGPLPP KPLPV FS++ GGWI GPPDPPVV++FLLGDV LRQE
Sbjct: 70 LEQLPALLVRSCTVFTAAGCCSLLIGTVKNGLVNSLSTVWCMIPAVLACVWFVFELTRSLLRVRRVMLREEAQRKLSVRRMRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKAAAGRLDAAGGGSKTGSSARVRRGPALVGAPSSRTRRHSSRGETPPDGTAPAADVRLGAGRNEVEEVNEAEGWRSSSGSGIVRRGGVGNXXXXXXXXXXXGLDEEDRLRLSPTQRTLALGLPPVGTASPDAYTSEERKRYHEPRAAAGATPCKTSSYD-DGDNEDDIEAASTAARPSPPTAGLKWPQAPPATTSGGGEGKXXXXXXXXXXXXXXXXXXXXXXXXLTMAAFGVTLSVFMILLSLRLLGVSAHYLPAFWIASPGLLALTLLALHSLVILDGSGGYGGAPVLQVGGNRLVVVLGRRPIILLTLLAAVLVVLKIDSF------AGGSGVVMEAMEMVHWGYALLPLWVIVCMLEAVYVGALWENYTRRSLTFP-GLF---------GGVRDLRGLGGLGYWFCCCLGGRGGYAGDGGKGGGCHWQ-WRRTWWSGE--KNGDDDF----EDPLVKDYDEYEGKQQXXXXXXXGTSGKFGGAGRESPPTDAQAYASYSSPVRQRVELTPSQRAAAITISVGTILLTACLVSLISGSTDEKANWGVPLTMIAATTGFGMVGAGVRKLALAHDRRMRGPLPPFTKPLPVFFSDQHGGWIAGPPDPPVVSIFLLGDVRLRQE 790
BLAST of mRNA_C-linearis_contig86.16248.1 vs. uniprot
Match: D7FZT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT0_ECTSI) HSP 1 Score: 266 bits (679), Expect = 5.780e-73 Identity = 282/671 (42.03%), Postives = 354/671 (52.76%), Query Frame = 3
Query: 261 VELEGLSRLLVRSCQVFTVASCVSALLGSLKSGYVEDMGMLWCTVPVWLACLWFVAEIALSFVRVRRVMLDEGRRRTLSVRRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGASAGTPRSRGGRPALARVTSSRMRRHISRGLS-----AXXXXXXXXXXXXXDKGEDDGEGW------------------------FGSDGSIGXXXXXXXXXXXXXXXWQMGTAGPPG-TPES-----QPRMAARPTASYSGGEDNDGDEGNKDDXYDYXXXXXXXXXXXXXXXXXXXSSAQG--------RDPRREVQISFLLQAWLRLWATMVFSAVILAIFLTLLTLRLFGFQT--VSAGWIGSPCIIALAILALHSLLLLDGSGGFGGGPVMRGGGNRLVVGLGRRPFILLTLVSAVLVVLKVDSASAGTTTAGSTWAVAVLVGKVHWGFIFFPLWVMLFLIEVVFVVSLWENHTGVSLARSLGLFVGAAKEDHSGGVDGVDDLGRPGL-FCFCLNDSTGSC----ESNRRGWLWWRGSGAKGEYGRLGEDDSGVGRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRRVELSPSQRAAASSIATGLFLLTMTVISVALGTSRDQASWGVPVTFVAAAAGLTMV 2123
V LE L LLVRSC VFT A C S L+G+LK+G + + ++WC +P LA +WFV E+ S +RVRRVML E +R LSVRR R XXXX XXXXXXXXXX XXXXXXXX SA R AL R SSR RRH+SRG + A + D+ EGW F D + +GTA P T E +PR AA T S + X XXXX +S+ G R +R V++S LLQAWLRLW TM V L++F+ LL+LRL G + ++A WI SP ++AL +LALHSL++LDGSGG+GG PV+R GGNRLVV LGRRP ILLTL++AVLVVLK+DS AG + AV + KVHWG++F PLWV++ ++E V++ +LWEN+T SL GLF GGV + LG G FC CL G E+ W W R + +YG G+ + + XXXXXXXXXXXXXXXXXXXXXX VRRRVEL+PSQRAAA +I+ G LLT ++S+ +G++ +QA WGVP+T V A G MV
Sbjct: 69 VVLEQLPALLVRSCTVFTAAGCCSLLIGTLKNGLEKSLSVMWCMIPAVLASVWFVFELIRSLLRVRRVMLREEAQRMLSVRRMRRQLRRXXXXASLQXXXXXXXXXXDMDVXXXXXXXXXXXSARVRRW----SALVRPPSSRTRRHLSRGETPPGGAAPAADVCLGAGRDEVEEADEFEGWXXXXXXXXXXXXXXXXXXXXXXXXFDEDDVLRLSPTQRTLALGLPP---VGTASPDAYTSEERKRYHEPRAAAGATPSKTSSYXXXXXXXXXXXXXXXXXXXPPTPGLKWPKAPPATTSSGGGEGEGDSHRSAQRAVRVSVLLQAWLRLWLTMAAFGVTLSVFMILLSLRLLGVSSHHLTAFWIASPGLLALTLLALHSLVILDGSGGYGGAPVLRVGGNRLVVVLGRRPVILLTLLAAVLVVLKIDSV------AGGSGAVMEAIEKVHWGYVFLPLWVIVCMLETVYLGALWENYTRRSLTFP-GLF---------GGVRDLRGLGGVGYWFCCCLGGRRGYAGDGGENGGCHWQWRRTWWSGEKYGD-GDSEDPLVSDXXXXXXXXXXXXXXXXXXXXXXXTSGKFGGFGRESPPTDAEAYVSCSSPVRRRVELTPSQRAAAITISAGAILLTACLVSLIVGSNDEQADWGVPLTMVTATTGFGMV 715
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-21_003040.1 |
| Exons | 5 |
| Model size | 2750 |
| Cds size | 2289 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930663.4104598-UTR-C-linearis_contig86:603864..604221 | 1622930663.4104598-UTR-C-linearis_contig86:603864..604221 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig86 603865..604221 - |
| 1690881184.5390937-UTR-C-linearis_contig86:603864..604221 | 1690881184.5390937-UTR-C-linearis_contig86:603864..604221 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig86 603865..604221 - |
| 1622930663.4952884-UTR-C-linearis_contig86:609960..610064 | 1622930663.4952884-UTR-C-linearis_contig86:609960..610064 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig86 609961..610064 - |
| 1690881184.604726-UTR-C-linearis_contig86:609960..610064 | 1690881184.604726-UTR-C-linearis_contig86:609960..610064 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig86 609961..610064 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930663.4222999-CDS-C-linearis_contig86:604221..604494 | 1622930663.4222999-CDS-C-linearis_contig86:604221..604494 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 604222..604494 - |
| 1690881184.5521932-CDS-C-linearis_contig86:604221..604494 | 1690881184.5521932-CDS-C-linearis_contig86:604221..604494 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 604222..604494 - |
| 1622930663.4342966-CDS-C-linearis_contig86:606041..607166 | 1622930663.4342966-CDS-C-linearis_contig86:606041..607166 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 606042..607166 - |
| 1690881184.5621014-CDS-C-linearis_contig86:606041..607166 | 1690881184.5621014-CDS-C-linearis_contig86:606041..607166 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 606042..607166 - |
| 1622930663.4495616-CDS-C-linearis_contig86:607205..607585 | 1622930663.4495616-CDS-C-linearis_contig86:607205..607585 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 607206..607585 - |
| 1690881184.5716486-CDS-C-linearis_contig86:607205..607585 | 1690881184.5716486-CDS-C-linearis_contig86:607205..607585 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 607206..607585 - |
| 1622930663.4665682-CDS-C-linearis_contig86:607618..607886 | 1622930663.4665682-CDS-C-linearis_contig86:607618..607886 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 607619..607886 - |
| 1690881184.5809708-CDS-C-linearis_contig86:607618..607886 | 1690881184.5809708-CDS-C-linearis_contig86:607618..607886 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 607619..607886 - |
| 1622930663.4814389-CDS-C-linearis_contig86:609717..609960 | 1622930663.4814389-CDS-C-linearis_contig86:609717..609960 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 609718..609960 - |
| 1690881184.5930045-CDS-C-linearis_contig86:609717..609960 | 1690881184.5930045-CDS-C-linearis_contig86:609717..609960 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig86 609718..609960 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16248.1 >prot_C-linearis_contig86.16248.1 ID=prot_C-linearis_contig86.16248.1|Name=mRNA_C-linearis_contig86.16248.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=763bp
MRTKKVSFFDESASEERVPLLTTSDSTAKDEKAEAVATAKEISSSSSFGD
AIVELEGLSRLLVRSCQVFTVASCVSALLGSLKSGYVEDMGMLWCTVPVW
LACLWFVAEIALSFVRVRRVMLDEGRRRTLSVRRARRRMQRNNKARAGQQ
QQQREPGDANQDGGGGGGGGGPGASAGTPRSRGGRPALARVTSSRMRRHI
SRGLSASASASTPSPSASEDKGEDDGEGWFGSDGSIGSSGGGGGRGGGGG
GGWQMGTAGPPGTPESQPRMAARPTASYSGGEDNDGDEGNKDDDYDYSSS
SLKKSPPSPPPPPPPPSSAQGRDPRREVQISFLLQAWLRLWATMVFSAVI
LAIFLTLLTLRLFGFQTVSAGWIGSPCIIALAILALHSLLLLDGSGGFGG
GPVMRGGGNRLVVGLGRRPFILLTLVSAVLVVLKVDSASAGTTTAGSTWA
VAVLVGKVHWGFIFFPLWVMLFLIEVVFVVSLWENHTGVSLARSLGLFVG
AAKEDHSGGVDGVDDLGRPGLFCFCLNDSTGSCESNRRGWLWWRGSGAKG
EYGRLGEDDSGVGRQQQRSARGGAGAAGELRRREQHRREGSAEDGTACLA
YSSGGGGGGGCSGGVRRRVELSPSQRAAASSIATGLFLLTMTVISVALGT
SRDQASWGVPVTFVAAAAGLTMVGAGFVSLASAYDRVLRGPLPPIVKPLP
VVFSERDGGWITGPPDPPVVTVFLLGDVVLRQEDLGFGWGRGGGGRGGLG
EAEGDVYWGSTC* back to topmRNA from alignment at C-linearis_contig86:603865..610064- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig86.16248.1 ID=mRNA_C-linearis_contig86.16248.1|Name=mRNA_C-linearis_contig86.16248.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6200bp|location=Sequence derived from alignment at C-linearis_contig86:603865..610064- (Chordaria linearis ClinC8C monoicous)
GCCGTTCAGCGTTCGCCGTTCGCCTGTTCGCTTTGATTTTTTGTGTGCGT
ACCTAGCAGACGCGGTGGAGCGCGTGCTCGCGTGCTCGCCGCCTGAGTAA
AGCCATGCGAACGAAGAAGGTGTCCTTCTTCGACGAGAGCGCAAGCGAGG
AGCGAGTGCCTCTCTTGACGACCTCGGACTCGACGGCAAAGGATGAAAAG
GCGGAGGCCGTGGCAACTGCGAAGGAAATTTCTTCCTCTTCGTCTTTCGG
AGACGCCATTGTGGAGCTCGAGGGGCTGTCGAGGCTCCTCGTTAGATCCT
GCCAGGTCTTCACGGTGGCGTCATGCGTGTCCGCCCTCCTTGGCTCGGTG
AGCTCCGTGCAGGATTTATGTGTATTTCCCTGCAGTGCCTGCACGTCTCT
CTTTCTGTCGACACACCAGCGGGTATCTAGAAAATGAAGACAAAAAAAAT
CAAGTCCGCTGGTGAAGATTAAGATTCAGATTCCATAGGTTCTCCGTGGT
TTTAGGTTTTAGTAGGCCCCTGACTGAGTTGTGCAACGTTGTGGGATGGA
GTGCTCGCTCACCTCGCGAAAGGGGCTCTCCCTCTGCTTTTCAGCTCTTA
TCTCCATGCCCTTGTCCTCGCGTTGTAATAGGCTTCCGGTCCGCACGGGT
CTTTTCTCCGTCGGTCTTGTTCTTTTCTACAGACACCACACTTCATTCAA
TAATGTGTTGTAAGATGCTTTGCGATAAGATGCTTTGCGACAGGAGCGAA
GAAACAGATAGGTACAGAGTATTGTACCTTTTACAAGTTGCCATTTTCTG
TCACGGAAACATCCATCGACTCTCTCTTTTCTTTCTTTTTTGAGCCCTTG
GGTTGGAGACAACACGAGTCACGAGCACTGCGTGGCGAAAGTGCCGCTCT
TGCTGCCTATTCCGCTATTCCCTACCGTCATTTTTTAAGTGTGCGACTTG
GGAGAAGAGACTAGATAGGCGAGACTAAGCGTTGTAGTTAGTGTTCGGGA
GTGGGCACACTGGAGAGTTGGCAAGCAGTGCCGAGAGATGGCACCCCTGT
GTGAAAAAAATGCGTCAAAGGGCACACCCGCGAGCTGGAAAACTGTGTCT
GTACCATTTGTCAACGCAATATGGGAAGTCATCGAGGCTCCACTCTGTGC
CGTGCGTCTTCTTCTTTGTGGCAGTGCACACATAAAAAATGAACAAGTTC
TTCCTTGGAATCGATAACCCTAACCCTAACCCTAACCATTATAATACTTC
AGGCCACCAACTACTGATGTGTACTGACGGTACCCTAAAACACCGACGGG
CACGACAACCAGTGCCATTACCGGAAGTACCATTTAGTCAGCATTGCACA
TGTCGGAGAGATCGCACAGGGGTGTGCGCTATTAAGACGCACAGGGGTGT
GCGGTATGTAGACAACCTAAATCATAGGAGTAGTGGGATTATCTCAGGGT
CCCAAAGATCGCACAGCAGTGCGGAGAGTTGGCACACCTGTGCGATAAAA
AGGCCAGTTTCAATTTTATTTTTTAAATCGATCGCACACCTGTGTTCCAA
TTCTCGAACACGGTACAAGTAGTCTACTGCTGTCGTCCGTCGAGGATCTT
GTTGGCGTCCGTGAACGAATGCGTACGTGATTTACTGGATCGCTACAACT
CCAACTTTTCGCGAGGTGCGGAGTACCATTTCGCGAGCAAGAGAATAACA
GATACACCGCGCAGAGAGTAGGCGCAAGCGAGAGGTGGCCGGGCGGTAGC
AAAGTTTTGGATAGCGCGCATTTAGTATTAGTGAAATGTTTTGTTTATTA
GTGGTCGAGTGTACGCGCACAGCCAAGCCTCCCTGCGAAAGGTGAGCGAG
GGAGTTTGAGTGATATTCTTGAACCAAGGAGTTGTGCCTCTCTCTGCGGT
CCGCCACGCCACTACGATCTTGATGACGATCTAACGTTTCTGAACGCAAG
AGACACCAGATGCAGATGGAACACGTATTCCTTGGCATTCCGCCGCATGC
GCGTTTTGAGTCCCCCCCCGACCCCTCCTCGGTTAGAACTCCGCACAATG
TGTGGCCTCACCATTTTTGTCACACACCCGACCAACGTCGCTCCTCTCTT
CCTCCCCCCGGCCGCGGCCGTTGCGTGTGTGCAACTCGTGGCCGACCAAA
CCAACCGCCCCCTTAATACTGCCTCCAGCTCAAGAGCGGGTACGTAGAAG
ACATGGGTATGCTGTGGTGCACGGTGCCGGTGTGGCTGGCGTGCCTGTGG
TTCGTGGCCGAGATCGCCCTCTCCTTCGTGCGCGTGCGGCGAGTCATGCT
GGACGAGGGACGGAGGCGCACGCTTTCGGTGCGGAGGGCGCGCCGGCGGA
TGCAGCGGAACAACAAAGCCCGGGCGGGACAGCAGCAGCAGCAGCGCGAA
CCAGGCGACGCCAACCAAGACGGGGGTGGGGGCGGGGGCGGGGGCGGTGG
GGGTAAGGAAGACGGCAGCGACGTCGAAGGTCCCGGTGCGAGTGCGGGCA
CCCCTCGGTCTCGTGGCGGACGGCCGGCGTTGGCGAGGGTCACCTCAAGC
CGGATGCGGCGGCACATATCGCGCGGTCTCTCGGCTTCCGCTTCCGCTTC
CACCCCGTCCCCGTCTGCATCTGAGGACAAGGGGGAGGACGACGGGGAGG
GTTGGTTTGGCAGCGATGGCAGCATCGGCAGCAGCGGCGGCGGTGGCGGT
CGCGGTGGTGGCGGCGGTGGCGGCTGGCAGATGGGGACTGCCGGCCCACC
AGGCACACCGGAATCACAACCGAGGATGGCCGCCCGACCCACGGCATCTT
ACAGCGGCGGCGAAGACAACGACGGCGACGAAGGCAACAAGGACGACGAT
TACGACTACGTCAAAACAACGCTGTTCGCAACGCCGGCTGAGCTCAAGTC
GTCGTCGAGCCTAAAGAAGTCGCCGCCGTCACCGCCACCGCCGCCGCCAC
CGCCGTCATCGGCGCAGGGAAGGGACCCGCGCCGGGAGGTGCAGATCAGC
TTCCTCCTCCAGGCGTGGCTGCGGCTGTGGGCCACGATGGTCTTCTCCGC
CGTCATCCTGGCGATCTTCTTGACCCTCCTGACGCTACGGCTGTTCGGAT
TCCAGACGGTGTCTGCAGGGTGGATAGGCAGCCCTTGCATCATCGCTCTC
GCGATCCTCGCGCTGCACTCCCTGCTGCTCCTGGACGGCAGTGGGGGCTT
CGGCGGGGGGCCCGTGATGCGGGGCGGGGGCAACCGGCTGGTGGTGGGCC
TGGGCCGGCGGCCCTTCATCCTGCTGACCCTCGTCTCCGCCGTGCTGGTG
GTGCTCAAGGTCGACAGCGCCTCCGCCGGCACGACGACCGCCGGCTCCAC
GTGGGCCGTCGCCGTCCTGGTCGGCAAGGTGCACTGGGGGTTCATCTTCT
TCCCGCTGTGGGTTATGCTCTTTTTGATCGAGGTGGTCTTCGTGGTTTCC
CTCTGGGAGAACCACACCGGCGTGAGCCTCGCCCGCTCACTGGGCCTGTT
CGTCGGGGCGGCGAAGGAAGACCACAGCGGCGGCGTTGACGGCGTTGACG
ATCTCGGGCGGCCCGGGCTCTTCTGCTTCTGCCTGAACGACAGCACCGGG
AGCTGCGAATCGAACCGGCGGGGGTGGTTGTGGTGGCGGGGGAGTGGGGC
GAAAGGGGAATACGGGCGGCTTGGTGAAGACGATAGCGGTGTTGGCAGAC
AGCAGCAGCGAAGCGCCAGAGGGGGAGCGGGGGCGGCAGGAGAGCTCCGC
AGGCGCGAGCAGCATCGGCGGGAAGGATCAGCGGAGGACGGAACGGCGTG
CCTCGCCTACTCCAGCGGCGGCGGCGGCGGCGGCGGCTGCAGCGGTGGCG
TCCGGCGGAGGGTGGAGCTATCCCCTAGCCAGCGGGCCGCCGCCTCTTCC
ATCGCCACCGGGCTGTTCTTGCTGACCATGACGGTGATCTCGGTGGCCCT
CGGCACGAGCAGAGATCAGGCGTCTTGGGGTGTTCCCGTTACCTTCGTCG
CAGCGGCGGCCGGCCTAACCATGGTGAGCCGAAGAAATACCGTTCGGGGG
TCTAGAAGCATGTTTGCTTACATATGCGGCAGGGTATCTGTCGCGCCTTC
TACATCATGCAAGCTGTGCTGTGCTAAAAAGTAGAACCTGCCCAGGATTT
TCTGGCCGTCTAGTATACCTTGGTGACGCAATGCCGTAGGCACATAGCGT
CTTTGCTTTGTTTTTTGCTCACTCCAGTCCAACGAAAATCATTTCCGGCA
CCAGCAACAAAACACAAGCGGTTGCCCCTGCCGTCCCCCTTAAGGACAAT
TCATTACCCCAGCCAAGCCACCGGCAAACCTCCTGCAAATGCAACCGTCG
ATTTTTTGCGATCCATTTCACCCGCCTGCTTCGAGCACAGACAGAATACA
TACATGCTTGCCTTGGTAATTTATGCGTTGTTAACAGCGATCCAAGACCC
CCCCCCCGAGGTCCGAGGTCAGGTCCGCCTCGAACATGAAATCTCACCTC
AAGTCTACTGGTACATACATAGAGAGACAGCGCCCGCCGACAAGAAACGT
AAAATACAAAACATGGGCTGAGGCTCAATTCCTTATTTTCAACTTTCGGC
CGAAGCTGGTGAGTTTTCTTAAAATCCAGTTTCTTTTTTTTTAGGTCCTT
ATCGAATTTGCCCGCTTTCTTATTTCTTTTGTCCTTGGAGGATATTGCTT
GTTTTTGCTTGCCTGCCTGGGATGGCGGTAAGATTGTTGCATTGGGCATT
TGGCATTTGGCATTTGGCACGGATGTCGATTGTCCTTCTCACCGCATAAC
ATGTATGCCACGGCCATGAAAATCACACCCGCTATCGTAATTTATCGAAA
AAATAAGCACAGGAAAACGCAAACAACGGCAGAGCAAAAGTGGTTTCAAT
CTTTTGCTTTCGCTCGAAGGGGCCGTGCACCACAAGAGACTACCCGCACG
AAATGCCTCAATGGAAACATCTCAACACGACATCGAGCCGAAAGGTCCGT
GTGGCGAACGTTGGGGGCTGTCCGCCTCGTTGGACCTCCTTACCCTTGCC
TCCTCCTAGTCTACCTCTAGCTGCACCCACCCACCAACGCCGCGATCTTC
ATCCGCACTACGACGCCAGCCATAATTTCATGCTACTACACGTGCTTCCA
TCAGGGCGGAGGGCGACACGGTAGTCGTGGTCGTTCCACGAAAAACAACC
ATATCGCTCACCCGCACCCCCAAAGAAATACACGCACGTGGGGGTAGGGC
TGGGCACATGGAGGAACGACGTTTCTTATTTTTCGCACTCTCTCCAATGC
ACTTCGTTTCTTATATTTTGGAGCTGTCTGGCACTCAGTTTCTTATTGAG
GTATTTCTTATCTTGTCGCCCAGATTGATCTATGTTCCTTAGCCCGAGTT
TCTTGTTTTTCGCGGATATCTCAGCCCTCATTTCTTGTGAAAAAAAATCT
TCAACAGCGGGCGCTATCTGTATTCAAATGGACTCGGAATGAACCTCACC
AAACCGATCTGAAACGGTAATTTATACTAACTAAAAAGAAATCGAACTGA
AAACCAAAACCAAACGACAGGTAGGCGCCGGGTTCGTCAGCCTGGCCTCG
GCGTACGACCGCGTGCTTCGCGGGCCGTTGCCGCCGATCGTCAAGCCGCT
CCCCGTTGTGTTCAGCGAGCGGGACGGGGGCTGGATCACGGGGCCCCCGG
ATCCGCCCGTGGTAACGGTTTTCCTGCTCGGCGATGTAGTCTTGAGGCAG
GAAGACCTAGGTTTTGGGTGGGGCCGCGGCGGAGGTGGCCGGGGAGGATT
GGGAGAGGCGGAGGGGGACGTTTATTGGGGTTCGACGTGTTGAAGCGAGA
GAGAGAGAGAGGCATGAGGTCGGGTCCCCCCCCTTTTGGGCACGAATTTA
AGTACGTACTCTGTATTTGTAGTAGAACGACGTCGCGTCGGTGTGCTTTT
GTTGGAACGTTTCGGCTGCAGACCAAGCGTCGCTCTTCGCACGCGCACGA
CGCTTGGATTTTTTTTGTCATTTCTGTTGTTGGTAGAATGTGCCGTTCTT
TTTCTCCTCTGCATGCTTTGTGTTGCTCTTCTTGCCGTCGTCGAGGAAGT
TGTTTTTTCGTTTGTTTTCTGTTCTTTGCCCTCTCCAGACTACCAGACTT
GTTTTGGTTTTGTTTTGATTTTATCGCTCTGCTGACCCCTCGGGTCCTTG
back to topCoding sequence (CDS) from alignment at C-linearis_contig86:603865..610064- >mRNA_C-linearis_contig86.16248.1 ID=mRNA_C-linearis_contig86.16248.1|Name=mRNA_C-linearis_contig86.16248.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4578bp|location=Sequence derived from alignment at C-linearis_contig86:603865..610064- (Chordaria linearis ClinC8C monoicous)
ATGCGAACGAAGAAGGTGTCCTTCTTCGACGAGAGCGCAAGCGAGGAGCG
AGTGCCTCTCTTGACGACCTCGGACTCGACGGCAAAGGATGAAAAGGCGG
AGGCCGTGGCAACTGCGAAGGAAATTTCTTCCTCTTCGTCTTTCGGAGAC
GCCATTGTGGAGCTCGAGGGGCTGTCGAGGCTCCTCGTTAGATCCTGCCA
GGTCTTCACGGTGGCGTCATGCGTGTCCGCCCTCCTTGGCTCGATGCGAA
CGAAGAAGGTGTCCTTCTTCGACGAGAGCGCAAGCGAGGAGCGAGTGCCT
CTCTTGACGACCTCGGACTCGACGGCAAAGGATGAAAAGGCGGAGGCCGT
GGCAACTGCGAAGGAAATTTCTTCCTCTTCGTCTTTCGGAGACGCCATTG
TGGAGCTCGAGGGGCTGTCGAGGCTCCTCGTTAGATCCTGCCAGGTCTTC
ACGGTGGCGTCATGCGTGTCCGCCCTCCTTGGCTCGCTCAAGAGCGGGTA
CGTAGAAGACATGGGTATGCTGTGGTGCACGGTGCCGGTGTGGCTGGCGT
GCCTGTGGTTCGTGGCCGAGATCGCCCTCTCCTTCGTGCGCGTGCGGCGA
GTCATGCTGGACGAGGGACGGAGGCGCACGCTTTCGGTGCGGAGGGCGCG
CCGGCGGATGCAGCGGAACAACAAAGCCCGGGCGGGACAGCAGCAGCAGC
AGCGCGAACCAGGCGACGCCAACCAAGACGGGGGTGGGGGCGGGGGCGGG
GGCGCTCAAGAGCGGGTACGTAGAAGACATGGGTATGCTGTGGTGCACGG
TGCCGGTGTGGCTGGCGTGCCTGTGGTTCGTGGCCGAGATCGCCCTCTCC
TTCGTGCGCGTGCGGCGAGTCATGCTGGACGAGGGACGGAGGCGCACGCT
TTCGGTGCGGAGGGCGCGCCGGCGGATGCAGCGGAACAACAAAGCCCGGG
CGGGACAGCAGCAGCAGCAGCGCGAACCAGGCGACGCCAACCAAGACGGG
GGTGGGGGCGGGGGCGGGGGCGGTCCCGGTGCGAGTGCGGGCACCCCTCG
GTCTCGTGGCGGACGGCCGGCGTTGGCGAGGGTCACCTCAAGCCGGATGC
GGCGGCACATATCGCGCGGTCTCTCGGCTTCCGCTTCCGCTTCCACCCCG
TCCCCGTCTGCATCTGAGGACAAGGGGGAGGACGACGGGGAGGGTTGGTT
TGGCAGCGATGGCAGCATCGGCAGCAGCGGCGGCGGTGGCGGTCGCGGTG
GTGGCGGCGGTGGCGGCTGGCAGATGGGGACTGCCGGCCCACCAGGCACA
CCGGAATCACAACCGAGGATGGCCGCCCGACCCACGGCATCTTACAGCGG
CGGCGAAGACAACGACGGCGACGAAGGCAACAAGGACGACGATTACGACT
ACGTCCCGGTGCGAGTGCGGGCACCCCTCGGTCTCGTGGCGGACGGCCGG
CGTTGGCGAGGGTCACCTCAAGCCGGATGCGGCGGCACATATCGCGCGGT
CTCTCGGCTTCCGCTTCCGCTTCCACCCCGTCCCCGTCTGCATCTGAGGA
CAAGGGGGAGGACGACGGGGAGGGTTGGTTTGGCAGCGATGGCAGCATCG
GCAGCAGCGGCGGCGGTGGCGGTCGCGGTGGTGGCGGCGGTGGCGGCTGG
CAGATGGGGACTGCCGGCCCACCAGGCACACCGGAATCACAACCGAGGAT
GGCCGCCCGACCCACGGCATCTTACAGCGGCGGCGAAGACAACGACGGCG
ACGAAGGCAACAAGGACGACGATTACGACTACTCGTCGTCGAGCCTAAAG
AAGTCGCCGCCGTCACCGCCACCGCCGCCGCCACCGCCGTCATCGGCGCA
GGGAAGGGACCCGCGCCGGGAGGTGCAGATCAGCTTCCTCCTCCAGGCGT
GGCTGCGGCTGTGGGCCACGATGGTCTTCTCCGCCGTCATCCTGGCGATC
TTCTTGACCCTCCTGACGCTACGGCTGTTCGGATTCCAGACGGTGTCTGC
AGGGTGGATAGGCAGCCCTTGCATCATCGCTCTCGCGATCCTCGCGCTGC
ACTCCCTGCTGCTCCTGGACGGCAGTGGGGGCTTCGGCGGGGGGCCCGTG
ATGCGGGGCGGGGGCAACCGGCTGGTGGTGGGCCTGGGCCGGCGGCCCTT
CATCCTGCTGACCCTCGTCTCCGCCGTGCTGGTGGTGCTCAAGGTCGACA
GCGCCTCCGCCGGCACGACGACCGCCGGCTCCACGTGGGCCGTCGCCGTC
CTGGTCGGCAAGGTGCACTGGGGGTTCATCTTCTTCCCGCTGTGGGTTAT
GCTCTTTTTGATCGAGGTGGTCTTCGTGGTTTCCCTCTGGGAGAACCACA
CCGGCGTGAGCCTCGCCCGCTCACTGGGCCTGTTCGTCGGGGCGGCGAAG
GAAGACCACAGCGGCGGCGTTGACGGCGTTGACGATCTCGGGCGGCCCGG
GCTCTTCTGCTTCTGCCTGAACGACAGCACCGGGAGCTGCGAATCGAACC
GGCGGGGGTGGTTGTGGTGGCGGGGGAGTGGGGCGAAAGGGGAATACGGG
CGGCTTGGTGAAGACGATAGCGGTGTTGGCAGACAGCAGCAGCGAAGCGC
CAGAGGGGGAGCGGGGGCGGCAGGAGAGCTCCGCAGGCGCGAGCAGCATC
GGCGGGAAGGATCAGCGGAGGACGGAACGGCGTGCCTCGCCTACTCCAGC
GGCGGCGGCGGCGGCGGCGGCTGCAGCGGTGGCGTCCGGCGGAGGGTGGA
GCTATCCCCTAGCCAGCGGGCCGCCGCCTCTTCCATCGCCACCGGGCTGT
TCTTGCTGACCATGACGGTGATCTCGGTGGCCCTCGGCACGAGCAGAGAT
CAGGCGTCTTGGGGTGTTCCCGTTACCTTCGTCGCAGCGGCGGCCGGCCT
AACCATGTCGTCGTCGAGCCTAAAGAAGTCGCCGCCGTCACCGCCACCGC
CGCCGCCACCGCCGTCATCGGCGCAGGGAAGGGACCCGCGCCGGGAGGTG
CAGATCAGCTTCCTCCTCCAGGCGTGGCTGCGGCTGTGGGCCACGATGGT
CTTCTCCGCCGTCATCCTGGCGATCTTCTTGACCCTCCTGACGCTACGGC
TGTTCGGATTCCAGACGGTGTCTGCAGGGTGGATAGGCAGCCCTTGCATC
ATCGCTCTCGCGATCCTCGCGCTGCACTCCCTGCTGCTCCTGGACGGCAG
TGGGGGCTTCGGCGGGGGGCCCGTGATGCGGGGCGGGGGCAACCGGCTGG
TGGTGGGCCTGGGCCGGCGGCCCTTCATCCTGCTGACCCTCGTCTCCGCC
GTGCTGGTGGTGCTCAAGGTCGACAGCGCCTCCGCCGGCACGACGACCGC
CGGCTCCACGTGGGCCGTCGCCGTCCTGGTCGGCAAGGTGCACTGGGGGT
TCATCTTCTTCCCGCTGTGGGTTATGCTCTTTTTGATCGAGGTGGTCTTC
GTGGTTTCCCTCTGGGAGAACCACACCGGCGTGAGCCTCGCCCGCTCACT
GGGCCTGTTCGTCGGGGCGGCGAAGGAAGACCACAGCGGCGGCGTTGACG
GCGTTGACGATCTCGGGCGGCCCGGGCTCTTCTGCTTCTGCCTGAACGAC
AGCACCGGGAGCTGCGAATCGAACCGGCGGGGGTGGTTGTGGTGGCGGGG
GAGTGGGGCGAAAGGGGAATACGGGCGGCTTGGTGAAGACGATAGCGGTG
TTGGCAGACAGCAGCAGCGAAGCGCCAGAGGGGGAGCGGGGGCGGCAGGA
GAGCTCCGCAGGCGCGAGCAGCATCGGCGGGAAGGATCAGCGGAGGACGG
AACGGCGTGCCTCGCCTACTCCAGCGGCGGCGGCGGCGGCGGCGGCTGCA
GCGGTGGCGTCCGGCGGAGGGTGGAGCTATCCCCTAGCCAGCGGGCCGCC
GCCTCTTCCATCGCCACCGGGCTGTTCTTGCTGACCATGACGGTGATCTC
GGTGGCCCTCGGCACGAGCAGAGATCAGGCGTCTTGGGGTGTTCCCGTTA
CCTTCGTCGCAGCGGCGGCCGGCCTAACCATGGTAGGCGCCGGGTTCGTC
AGCCTGGCCTCGGCGTACGACCGCGTGCTTCGCGGGCCGTTGCCGCCGAT
CGTCAAGCCGCTCCCCGTTGTGTTCAGCGAGCGGGACGGGGGCTGGATCA
CGGGGCCCCCGGATCCGCCCGTGGTAACGGTTTTCCTGCTCGGCGATGTA
GTCTTGAGGCAGGAAGACCTAGGTTTTGGGTGGGGCCGCGGCGGAGGTGG
CCGGGGAGGATTGGGAGAGGCGGAGGGGGACGTTTATTGGGGTTCGACGT
GTTGAGTAGGCGCCGGGTTCGTCAGCCTGGCCTCGGCGTACGACCGCGTG
CTTCGCGGGCCGTTGCCGCCGATCGTCAAGCCGCTCCCCGTTGTGTTCAG
CGAGCGGGACGGGGGCTGGATCACGGGGCCCCCGGATCCGCCCGTGGTAA
CGGTTTTCCTGCTCGGCGATGTAGTCTTGAGGCAGGAAGACCTAGGTTTT
GGGTGGGGCCGCGGCGGAGGTGGCCGGGGAGGATTGGGAGAGGCGGAGGG
GGACGTTTATTGGGGTTCGACGTGTTGA back to top
|