prot_C-linearis_contig86.16248.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig86.16248.1
Unique Nameprot_C-linearis_contig86.16248.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length763
Homology
BLAST of mRNA_C-linearis_contig86.16248.1 vs. uniprot
Match: A0A6H5KJX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX7_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 2.010e-92
Identity = 317/745 (42.55%), Postives = 398/745 (53.42%), Query Frame = 0
Query:   55 LEGLSRLLVRSCQVFTVASCVSALLGSLKSGYVEDMGMLWCTVPVWLACLWFVAEIALSFVRVRRVMLDEGRRRTLSVRRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGA---SAGTPRSRGGR------------PALARVTSSRMRRHISRGLS-----AXXXXXXXXXXXXXDKGEDDGEGWFGSDGS-------IGXXXXXXXXXXXXXXXWQ------------------MGTAGPPG-TPES-----QPRMAARPTASYSGGEDNDGDEGNKDDXYDYXXXXXXXXXXXXXXXXXXXSSAQGRDPRREVQISFLLQAWLRLWA--------TMVFSAVILAIFLTLLTLRLFGFQT--VSAGWIGSPCIIALAILALHSLLLLDGSGGFGGGPVMRGGGNRLVVGLGRRPFILLTLVSAVLVVLKVDSASAGTTTAGSTWAVAVLVGKVHWGFIFFPLWVMLFLIEVVFVVSLWENHTGVSLARSLGLFVGAAKEDHSGGVDGVDDLGRPGL-FCFCLNDSTGSCESNRRG----WLWWRGSGAKGEYGRLGEDDSGVGRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRRVELSPSQRAAASSIATGLFLLTMTVISVALGTSRDQASWGVPVTFVAAAAGLTMVGAGFVSLASAYDRVLRGPLPPIVKPLPVVFSERDGGWITGPPDPPVVTVFLLGDVVLRQE 733
            LE L  LLVRSC VFT A C S L+G++K+G V  +  +WC +P  LAC+WFV E+  S +RVRRVML E  +R LSVRR R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A   +AG   + GG             PAL    SSR RRH SRG +     A              +  ++ EGW  S GS       +G XXXXXXXXXXX    +                  +GTA P   T E      +PR AA  T   +   D DGD  +  +                       +++ G + +                         TM    V L++F+ LL+LRL G     + A WI SP ++AL +LALHSL++LDGSGG+GG PV++ GGNRLVV LGRRP ILLTL++AVLVVLK+DS       AG +  V   +  VHWG+   PLWV++ ++E V+V +LWEN+T  SL    GLF         GGV  +  LG  G  FC CL    G      +G    W  WR +   GE  + G+DD     +               XXXXXXX                           VR+RVEL+PSQRAAA +I+ G  LLT  ++S+  G++ ++A+WGVP+T +AA  G  MVGAG   LA A+DR +RGPLPP  KPLPV FS++ GGWI GPPDPPVV++FLLGDV LRQE
Sbjct:   70 LEQLPALLVRSCTVFTAAGCCSLLIGTVKNGLVNSLSTVWCMIPAVLACVWFVFELTRSLLRVRRVMLREEAQRKLSVRRMRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKAAAGRLDAAGGGSKTGSSARVRRGPALVGAPSSRTRRHSSRGETPPDGTAPAADVRLGAGRNEVEEVNEAEGWRSSSGSGIVRRGGVGNXXXXXXXXXXXGLDEEDRLRLSPTQRTLALGLPPVGTASPDAYTSEERKRYHEPRAAAGATPCKTSSYD-DGDNEDDIEAASTAARPSPPTAGLKWPQAPPATTSGGGEGKXXXXXXXXXXXXXXXXXXXXXXXXLTMAAFGVTLSVFMILLSLRLLGVSAHYLPAFWIASPGLLALTLLALHSLVILDGSGGYGGAPVLQVGGNRLVVVLGRRPIILLTLLAAVLVVLKIDSF------AGGSGVVMEAMEMVHWGYALLPLWVIVCMLEAVYVGALWENYTRRSLTFP-GLF---------GGVRDLRGLGGLGYWFCCCLGGRGGYAGDGGKGGGCHWQ-WRRTWWSGE--KNGDDDF----EDPLVKDYDEYEGKQQXXXXXXXGTSGKFGGAGRESPPTDAQAYASYSSPVRQRVELTPSQRAAAITISVGTILLTACLVSLISGSTDEKANWGVPLTMIAATTGFGMVGAGVRKLALAHDRRMRGPLPPFTKPLPVFFSDQHGGWIAGPPDPPVVSIFLLGDVRLRQE 790          
BLAST of mRNA_C-linearis_contig86.16248.1 vs. uniprot
Match: D7FZT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT0_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 4.170e-74
Identity = 282/671 (42.03%), Postives = 354/671 (52.76%), Query Frame = 0
Query:   53 VELEGLSRLLVRSCQVFTVASCVSALLGSLKSGYVEDMGMLWCTVPVWLACLWFVAEIALSFVRVRRVMLDEGRRRTLSVRRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGASAGTPRSRGGRPALARVTSSRMRRHISRGLS-----AXXXXXXXXXXXXXDKGEDDGEGW------------------------FGSDGSIGXXXXXXXXXXXXXXXWQMGTAGPPG-TPES-----QPRMAARPTASYSGGEDNDGDEGNKDDXYDYXXXXXXXXXXXXXXXXXXXSSAQG--------RDPRREVQISFLLQAWLRLWATMVFSAVILAIFLTLLTLRLFGFQT--VSAGWIGSPCIIALAILALHSLLLLDGSGGFGGGPVMRGGGNRLVVGLGRRPFILLTLVSAVLVVLKVDSASAGTTTAGSTWAVAVLVGKVHWGFIFFPLWVMLFLIEVVFVVSLWENHTGVSLARSLGLFVGAAKEDHSGGVDGVDDLGRPGL-FCFCLNDSTGSC----ESNRRGWLWWRGSGAKGEYGRLGEDDSGVGRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRRVELSPSQRAAASSIATGLFLLTMTVISVALGTSRDQASWGVPVTFVAAAAGLTMV 673
            V LE L  LLVRSC VFT A C S L+G+LK+G  + + ++WC +P  LA +WFV E+  S +RVRRVML E  +R LSVRR R     XXXX    XXXXXXXXXX    XXXXXXXX   SA   R      AL R  SSR RRH+SRG +     A              +  D+ EGW                        F  D  +                  +GTA P   T E      +PR AA  T S +              X   XXXX               +S+ G        R  +R V++S LLQAWLRLW TM    V L++F+ LL+LRL G  +  ++A WI SP ++AL +LALHSL++LDGSGG+GG PV+R GGNRLVV LGRRP ILLTL++AVLVVLK+DS       AG + AV   + KVHWG++F PLWV++ ++E V++ +LWEN+T  SL    GLF         GGV  +  LG  G  FC CL    G      E+    W W R   +  +YG  G+ +  +    XXXXXXXXXXXXXXXXXXXXXX                          VRRRVEL+PSQRAAA +I+ G  LLT  ++S+ +G++ +QA WGVP+T V A  G  MV
Sbjct:   69 VVLEQLPALLVRSCTVFTAAGCCSLLIGTLKNGLEKSLSVMWCMIPAVLASVWFVFELIRSLLRVRRVMLREEAQRMLSVRRMRRQLRRXXXXASLQXXXXXXXXXXDMDVXXXXXXXXXXXSARVRRW----SALVRPPSSRTRRHLSRGETPPGGAAPAADVCLGAGRDEVEEADEFEGWXXXXXXXXXXXXXXXXXXXXXXXXFDEDDVLRLSPTQRTLALGLPP---VGTASPDAYTSEERKRYHEPRAAAGATPSKTSSYXXXXXXXXXXXXXXXXXXXPPTPGLKWPKAPPATTSSGGGEGEGDSHRSAQRAVRVSVLLQAWLRLWLTMAAFGVTLSVFMILLSLRLLGVSSHHLTAFWIASPGLLALTLLALHSLVILDGSGGYGGAPVLRVGGNRLVVVLGRRPVILLTLLAAVLVVLKIDSV------AGGSGAVMEAIEKVHWGYVFLPLWVIVCMLETVYLGALWENYTRRSLTFP-GLF---------GGVRDLRGLGGVGYWFCCCLGGRRGYAGDGGENGGCHWQWRRTWWSGEKYGD-GDSEDPLVSDXXXXXXXXXXXXXXXXXXXXXXXTSGKFGGFGRESPPTDAEAYVSCSSPVRRRVELTPSQRAAAITISAGAILLTACLVSLIVGSNDEQADWGVPLTMVTATTGFGMV 715          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJX7_9PHAE2.010e-9242.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZT0_ECTSI4.170e-7442.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 393..419
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 361..371
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 627..649
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 661..684
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..117
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 420..440
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 372..392
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 650..660
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 441..459
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 118..335
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 685..762
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 336..360
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 460..483
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 80..90
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 484..626
NoneNo IPR availableTMHMMTMhelixcoord: 90..112
NoneNo IPR availableTMHMMTMhelixcoord: 659..681
NoneNo IPR availableTMHMMTMhelixcoord: 627..649
NoneNo IPR availableTMHMMTMhelixcoord: 411..433
NoneNo IPR availableTMHMMTMhelixcoord: 336..358
NoneNo IPR availableTMHMMTMhelixcoord: 368..390
NoneNo IPR availableTMHMMTMhelixcoord: 61..80
NoneNo IPR availableTMHMMTMhelixcoord: 461..483

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:604222..609960 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16248.1mRNA_C-linearis_contig86.16248.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig86 603865..610064 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig86.16248.1 ID=prot_C-linearis_contig86.16248.1|Name=mRNA_C-linearis_contig86.16248.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=763bp
MRTKKVSFFDESASEERVPLLTTSDSTAKDEKAEAVATAKEISSSSSFGD
AIVELEGLSRLLVRSCQVFTVASCVSALLGSLKSGYVEDMGMLWCTVPVW
LACLWFVAEIALSFVRVRRVMLDEGRRRTLSVRRARRRMQRNNKARAGQQ
QQQREPGDANQDGGGGGGGGGPGASAGTPRSRGGRPALARVTSSRMRRHI
SRGLSASASASTPSPSASEDKGEDDGEGWFGSDGSIGSSGGGGGRGGGGG
GGWQMGTAGPPGTPESQPRMAARPTASYSGGEDNDGDEGNKDDDYDYSSS
SLKKSPPSPPPPPPPPSSAQGRDPRREVQISFLLQAWLRLWATMVFSAVI
LAIFLTLLTLRLFGFQTVSAGWIGSPCIIALAILALHSLLLLDGSGGFGG
GPVMRGGGNRLVVGLGRRPFILLTLVSAVLVVLKVDSASAGTTTAGSTWA
VAVLVGKVHWGFIFFPLWVMLFLIEVVFVVSLWENHTGVSLARSLGLFVG
AAKEDHSGGVDGVDDLGRPGLFCFCLNDSTGSCESNRRGWLWWRGSGAKG
EYGRLGEDDSGVGRQQQRSARGGAGAAGELRRREQHRREGSAEDGTACLA
YSSGGGGGGGCSGGVRRRVELSPSQRAAASSIATGLFLLTMTVISVALGT
SRDQASWGVPVTFVAAAAGLTMVGAGFVSLASAYDRVLRGPLPPIVKPLP
VVFSERDGGWITGPPDPPVVTVFLLGDVVLRQEDLGFGWGRGGGGRGGLG
EAEGDVYWGSTC*
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