mRNA_C-linearis_contig86.16237.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16237.1
Unique NamemRNA_C-linearis_contig86.16237.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig86.16237.1 vs. uniprot
Match: A0A6H5KX33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX33_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.470e-45
Identity = 108/214 (50.47%), Postives = 134/214 (62.62%), Query Frame = 1 
Query:   10 ERPCSISGLQAKYFQHIL--AAXXXXXXXXXPSEGCIRGGRGRPSATKAECSCPCQPRMEECTCPRDG-EQYPSDNAA---SRVGPVRPVLSPHHDALAEEALGILSPAEKNELILQMHDKLRHLSGLIEETSTASERTVARLERAHRDALRGQMLSEQRLREELLRWRHNNPE------ENARLRDENHHSRRQYLAVLGKLARRKKLLQTAL 615
            E P +ISGL+ KYFQH+L  ++          SE  +R  +      + EC+C  +  M  CTC  D  E YPSD  A   + V    P +    DALA+EAL ILS AEK+ +IL MH KLRHLS   E+  + SER V  LERAHRDALR +MLSEQRLREEL +W+H++PE      EN RLR+E  HS+RQYLAVLGKLARR  LL+ +L
Sbjct:    5 EPPSTISGLKTKYFQHVLDVSSTEPSLSSSSSSEAAVRWDQ---PTRRTECTC--RTTMMGCTCWGDTKEAYPSDEDAPSTTHVLRTPPPVPSSSDALAKEALSILSQAEKDRIILLMHAKLRHLSHRAEDARSVSERKVCCLERAHRDALRERMLSEQRLREELRQWKHHHPEVAELRLENQRLREEKDHSQRQYLAVLGKLARRHTLLKKSL 213
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BLAST of mRNA_C-linearis_contig86.16237.1 vs. uniprot
Match: D7G3C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C8_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.430e-24
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:  343 MHDKLRHLSGLIEETSTASERTVARLERAHRDALRGQMLSEQRLREELLRWRHNNPEENARLRDENHHSRRQYLAVLGKLARRKKLLQTAL 615
            MH KLRHLS   E+  + SER    LERAHRDALR +MLSEQRLREEL +W+H++PE   RLR+E  HS+RQYLAVLGKLARR   L+T+L
Sbjct:    1 MHAKLRHLSHRAEDARSVSERKACCLERAHRDALRERMLSEQRLREELRQWKHHHPE---RLREEKDHSQRQYLAVLGKLARRHTWLKTSL 88
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX33_9PHAE3.470e-4550.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3C8_ECTSI3.430e-2464.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:531918..534083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_002850.1
Exons5
Model size618
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16237.1prot_C-linearis_contig86.16237.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 531918..534080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930662.1099002-CDS-C-linearis_contig86:531917..5320221622930662.1099002-CDS-C-linearis_contig86:531917..532022Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 531918..532022 -
1690881183.84682-CDS-C-linearis_contig86:531917..5320221690881183.84682-CDS-C-linearis_contig86:531917..532022Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 531918..532022 -
1622930662.1235924-CDS-C-linearis_contig86:532424..5325711622930662.1235924-CDS-C-linearis_contig86:532424..532571Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 532425..532571 -
1690881183.8577354-CDS-C-linearis_contig86:532424..5325711690881183.8577354-CDS-C-linearis_contig86:532424..532571Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 532425..532571 -
1622930662.1391594-CDS-C-linearis_contig86:532944..5331001622930662.1391594-CDS-C-linearis_contig86:532944..533100Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 532945..533100 -
1690881183.8672838-CDS-C-linearis_contig86:532944..5331001690881183.8672838-CDS-C-linearis_contig86:532944..533100Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 532945..533100 -
1622930662.155195-CDS-C-linearis_contig86:533466..5336121622930662.155195-CDS-C-linearis_contig86:533466..533612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 533467..533612 -
1690881183.8779225-CDS-C-linearis_contig86:533466..5336121690881183.8779225-CDS-C-linearis_contig86:533466..533612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 533467..533612 -
1622930662.1732163-CDS-C-linearis_contig86:534019..5340801622930662.1732163-CDS-C-linearis_contig86:534019..534080Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 534020..534080 -
1690881183.8904734-CDS-C-linearis_contig86:534019..5340801690881183.8904734-CDS-C-linearis_contig86:534019..534080Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 534020..534080 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930662.1927912-UTR-C-linearis_contig86:534080..5340831622930662.1927912-UTR-C-linearis_contig86:534080..534083Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 534081..534083 -
1690881183.899729-UTR-C-linearis_contig86:534080..5340831690881183.899729-UTR-C-linearis_contig86:534080..534083Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 534081..534083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16237.1

>prot_C-linearis_contig86.16237.1 ID=prot_C-linearis_contig86.16237.1|Name=mRNA_C-linearis_contig86.16237.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=205bp
MDERPCSISGLQAKYFQHILAASSSSSSSSPPSEGCIRGGRGRPSATKAE
CSCPCQPRMEECTCPRDGEQYPSDNAASRVGPVRPVLSPHHDALAEEALG
ILSPAEKNELILQMHDKLRHLSGLIEETSTASERTVARLERAHRDALRGQ
MLSEQRLREELLRWRHNNPEENARLRDENHHSRRQYLAVLGKLARRKKLL
QTAL*
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mRNA from alignment at C-linearis_contig86:531918..534083-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16237.1 ID=mRNA_C-linearis_contig86.16237.1|Name=mRNA_C-linearis_contig86.16237.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2166bp|location=Sequence derived from alignment at C-linearis_contig86:531918..534083- (Chordaria linearis ClinC8C monoicous)
AGCATGGATGAGCGACCGTGCAGCATATCTGGCCTTCAAGCAAAGTACTT
CCAGCATATTCTAGGTGGGAGGAGATTGGGACATGGCATGCGGTTGAGCC
TTCGATGGTCGAGGAAATAGACAACAGCAGGATCTCTGCCTGTCTGTGGG
ACGGACGGTAAACTTCACGGGCGGCACAGAGAAGAGAGGGCGCTCTAGTC
AGCCGCAGTCGGAGCCACATTCCTTCCAAGTGTCACGACATGTCCGAAGC
TTGAAGAGTTCCAGCCAACCCGAACTCTCTGAGTTTGCTTCTTGTGATAA
AGGAACACCTAGCAAATCATCCTCGTCTGTCTGTAGTCTGAATCCATGCT
GTCGAACTCTCGACGCCGCCATTGTGTGTGTCTCTCTCTACCTCTACCTC
TCAAACGACCACGTCTCTTTCTCTCGCGCCTATATTTATTCTTCGTTCCC
CATCAATAGACTTATCCCCAGCAGCGTCCTCGTCTTCATCGTCGTCATCG
CCACCATCAGAGGGCTGCATACGGGGGGGTAGGGGTCGGCCGAGTGCAAC
AAAGGCGGAGTGCTCTTGCCCTTGCCAGCCTAGGATGGAAGAATGCACTT
GCCCCAGGGATGGCGAGGTGTGTGATATGTGTGCGATCGTATGTATCGTA
AGAACAGACAGAGCGCGCGTGGCAGATACAGCGAGAACGTAGAGAGAGAG
AGAGAGGGAGGAGAGAGGAGAGAGGAGAGAGAGAGAACAGAGCAGCTACA
TAATACGGAGTATACAGCAGGTCAGGTACGTATGTATGTATGTATATGTG
CACATTGTAGAGAGAGCTGAATATGATAAAACCGCCGTACAAACGTAATG
CTTATTTTAGGTGACACGGCTCCCTAATCTAAGGGCAATACTTCGGAGCA
GCTTACGTAGTACCTCTTGCCCCACCGTTCGTCTCTCCCTCGGTTTGTTT
ATTTTCCATACTGACTGTTGTATACACCAACAGCAGTACCCGAGTGACAA
CGCCGCAAGCCGGGTAGGGCCAGTCCGACCCGTACTATCCCCGCACCATG
ATGCTCTCGCGGAGGAAGCGCTCGGTATTCTGAGCCCTGCGGAGAAGAAC
GAGCTGATCTTGCAGATGCACGACAAGCTGCGCCACCTGGTCTGTCAAAC
TGTCCGTCAATAATTGTCGTGGTATATCTAGTCTAGAGAAAGCAAGGGCG
CGTGGGCGCCCGGCCGCTCGACAACCCTAGGCGCATGGCTTCACACGCGG
GGTAGAAATGTCCTAGCTTCCATGTCCTGCGTTTCCGATTGCGTGTAGGT
ACATTGGGTGGCGGGGGCTCTCGCGCGCCCTCGCAAGACGGATCGAACTA
TCACGCATGCTTGCCAATTCAATGTGGAAAGGTGCAGAGCCTTGAAGCAG
CTCGATCATTGTCCCTCCGTCGAGCTCAGACGAAACGAACCTTTTGCCAC
GCTGCTGCTATCTACTACGCTGCTACTGTACGCACAAACTGGCTGTGCAC
GGGCGCCGCCAGAGCGGTCTGATTGAAGAGACCAGCACCGCATCCGAACG
TACAGTGGCCCGGCTGGAAAGGGCGCACAGAGATGCCCTACGGGGGCAGA
TGCTGTCCGAGCAGCGGCTAAGAGAGGAGTTGCTCCGATGGAGGCATAAC
AACCCCGAGGTGTAGAGCATTGTGTAGGTGGCCATTGTCGGGGAGAAACA
AGTAGCTGACGAGGTCAGCCGCACTAAGGTACCGCTTTCAGCTCTACCGT
CATACTGGTGATTGATGTGGCCGCCATGGATCGGGGACTACAGTAATAGT
AGTAGTAGTAGTAGTACGGTCATGGGTGCGCAGCCTCTCTTTGAGCGCTG
TATGTGCATGCACACGCCGTCTCTTCCTGACTCAACTCTCCCCCAACTCT
CGATTTCCCTTATTAAATTTGTTCTTGGATTTTCCCGTCTCTCCTCCGCT
CCTTACCTATATTTGCCGACTCTCTCGTCCTCATTGATTGGTTGTCTCCC
ACGCTGCCGGCCACCATACATACCACACCACCACCATAAAAAGGTTGCTG
AACTTCGGGAGGAGAACGCCCGGTTACGCGACGAAAACCACCACAGCCGG
CGGCAGTACTTGGCTGTACTGGGAAAGCTCGCGCGGAGAAAAAAGCTGCT
GCAAACGGCCTTGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig86:531918..534083-

>mRNA_C-linearis_contig86.16237.1 ID=mRNA_C-linearis_contig86.16237.1|Name=mRNA_C-linearis_contig86.16237.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at C-linearis_contig86:531918..534083- (Chordaria linearis ClinC8C monoicous)
ATGGATGAGCGACCGTGCAGCATATCTGGCCTTCAAGCAAAGTACTTCCA
GCATATTCTAGATGGATGAGCGACCGTGCAGCATATCTGGCCTTCAAGCA
AAGTACTTCCAGCATATTCTAGCAGCGTCCTCGTCTTCATCGTCGTCATC
GCCACCATCAGAGGGCTGCATACGGGGGGGTAGGGGTCGGCCGAGTGCAA
CAAAGGCGGAGTGCTCTTGCCCTTGCCAGCCTAGGATGGAAGAATGCACT
TGCCCCAGGGATGGCGAGCAGCGTCCTCGTCTTCATCGTCGTCATCGCCA
CCATCAGAGGGCTGCATACGGGGGGGTAGGGGTCGGCCGAGTGCAACAAA
GGCGGAGTGCTCTTGCCCTTGCCAGCCTAGGATGGAAGAATGCACTTGCC
CCAGGGATGGCGAGCAGTACCCGAGTGACAACGCCGCAAGCCGGGTAGGG
CCAGTCCGACCCGTACTATCCCCGCACCATGATGCTCTCGCGGAGGAAGC
GCTCGGTATTCTGAGCCCTGCGGAGAAGAACGAGCTGATCTTGCAGATGC
ACGACAAGCTGCGCCACCTGCAGTACCCGAGTGACAACGCCGCAAGCCGG
GTAGGGCCAGTCCGACCCGTACTATCCCCGCACCATGATGCTCTCGCGGA
GGAAGCGCTCGGTATTCTGAGCCCTGCGGAGAAGAACGAGCTGATCTTGC
AGATGCACGACAAGCTGCGCCACCTGAGCGGTCTGATTGAAGAGACCAGC
ACCGCATCCGAACGTACAGTGGCCCGGCTGGAAAGGGCGCACAGAGATGC
CCTACGGGGGCAGATGCTGTCCGAGCAGCGGCTAAGAGAGGAGTTGCTCC
GATGGAGGCATAACAACCCCGAGAGCGGTCTGATTGAAGAGACCAGCACC
GCATCCGAACGTACAGTGGCCCGGCTGGAAAGGGCGCACAGAGATGCCCT
ACGGGGGCAGATGCTGTCCGAGCAGCGGCTAAGAGAGGAGTTGCTCCGAT
GGAGGCATAACAACCCCGAGGAGAACGCCCGGTTACGCGACGAAAACCAC
CACAGCCGGCGGCAGTACTTGGCTGTACTGGGAAAGCTCGCGCGGAGAAA
AAAGCTGCTGCAAACGGCCTTGTGAGAGAACGCCCGGTTACGCGACGAAA
ACCACCACAGCCGGCGGCAGTACTTGGCTGTACTGGGAAAGCTCGCGCGG
AGAAAAAAGCTGCTGCAAACGGCCTTGTGA
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