prot_C-linearis_contig86.16237.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig86.16237.1
Unique Nameprot_C-linearis_contig86.16237.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length205
Homology
[Close]
BLAST of mRNA_C-linearis_contig86.16237.1 vs. uniprot
Match: A0A6H5KX33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX33_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.350e-45
Identity = 108/214 (50.47%), Postives = 134/214 (62.62%), Query Frame = 0 
Query:    3 ERPCSISGLQAKYFQHIL--AAXXXXXXXXXPSEGCIRGGRGRPSATKAECSCPCQPRMEECTCPRDG-EQYPSDNAA---SRVGPVRPVLSPHHDALAEEALGILSPAEKNELILQMHDKLRHLSGLIEETSTASERTVARLERAHRDALRGQMLSEQRLREELLRWRHNNPE------ENARLRDENHHSRRQYLAVLGKLARRKKLLQTAL 204
            E P +ISGL+ KYFQH+L  ++          SE  +R  +      + EC+C  +  M  CTC  D  E YPSD  A   + V    P +    DALA+EAL ILS AEK+ +IL MH KLRHLS   E+  + SER V  LERAHRDALR +MLSEQRLREEL +W+H++PE      EN RLR+E  HS+RQYLAVLGKLARR  LL+ +L
Sbjct:    5 EPPSTISGLKTKYFQHVLDVSSTEPSLSSSSSSEAAVRWDQ---PTRRTECTC--RTTMMGCTCWGDTKEAYPSDEDAPSTTHVLRTPPPVPSSSDALAKEALSILSQAEKDRIILLMHAKLRHLSHRAEDARSVSERKVCCLERAHRDALRERMLSEQRLREELRQWKHHHPEVAELRLENQRLREEKDHSQRQYLAVLGKLARRHTLLKKSL 213
[Close]
BLAST of mRNA_C-linearis_contig86.16237.1 vs. uniprot
Match: D7G3C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C8_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.340e-24
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 0 
Query:  114 MHDKLRHLSGLIEETSTASERTVARLERAHRDALRGQMLSEQRLREELLRWRHNNPEENARLRDENHHSRRQYLAVLGKLARRKKLLQTAL 204
            MH KLRHLS   E+  + SER    LERAHRDALR +MLSEQRLREEL +W+H++PE   RLR+E  HS+RQYLAVLGKLARR   L+T+L
Sbjct:    1 MHAKLRHLSHRAEDARSVSERKACCLERAHRDALRERMLSEQRLREELRQWKHHHPE---RLREEKDHSQRQYLAVLGKLARRHTWLKTSL 88
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16237.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX33_9PHAE3.350e-4550.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3C8_ECTSI3.340e-2464.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:531918..534080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16237.1mRNA_C-linearis_contig86.16237.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig86 531918..534083 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig86.16237.1 ID=prot_C-linearis_contig86.16237.1|Name=mRNA_C-linearis_contig86.16237.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=205bp
MDERPCSISGLQAKYFQHILAASSSSSSSSPPSEGCIRGGRGRPSATKAE
CSCPCQPRMEECTCPRDGEQYPSDNAASRVGPVRPVLSPHHDALAEEALG
ILSPAEKNELILQMHDKLRHLSGLIEETSTASERTVARLERAHRDALRGQ
MLSEQRLREELLRWRHNNPEENARLRDENHHSRRQYLAVLGKLARRKKLL
QTAL*
back to top