mRNA_C-linearis_contig86.16217.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16217.1 vs. uniprot
Match: A0A6H5L805_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L805_9PHAE) HSP 1 Score: 532 bits (1371), Expect = 4.500e-174 Identity = 415/765 (54.25%), Postives = 457/765 (59.74%), Query Frame = 3
Query: 345 MALVDTQGFVMAVDRSLFGPQGRRWIERKLPDVVTNLAFISVSAVGALFLCFHITREYYQSGYWAILQTPKHVLNAVILHLVARALRWHLDRLLGLNFAARDQALPDFFAASVQEGATDGRDDGNXXXXXXXXXNKAAVLW------------------PWQSSQNQSRSTQQEPRVSTSPFAPHGWXXXXXXXXXXXDLDVFRGH-------------------------------GRSHSADGAAV-ASAGGESGSRNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFPDLFGACRPG--QNNHRRGRMPSSPPSTPVATRKEPTRPSSLDRNRAGGGRRGRLSAGRRNLSPETPHTAAHRWIQEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREGGRRERGETG------GEDEEGEQDGETGVGTAMAXXXXXXXXXXXXXXXXXXXDG--------ASRRWKPIDKLSRALGSTRRRASMRTGGLGRDGAPPGNEPRLNFFTEVDLDELLHSTFFIKMCDDASWLYVEDHPYVPELNWLLTLWGGYKITPRFQGEVKQNEAHRMLFQCESGRHQGNIRIRSRATNTFLFFLGVKQPLTWVAWDRDVVGGDWEDLKLEWVGKPQGADGVLVGDERGRVVIWSRRINGYVSWNGSRFTHVQGREGATVFMLQRMASS 2441
MALVDTQGFVMAVDRSLFGPQGRRWIERKLP+V TNLAF++VSA GA L FHITREYY SGYWAILQTPKH+LNAV+LHLVARALRWH+DR+LG+NFAA D+ALPDFF ++ +G XXXXXXXXX P Q Q + R + +E + F GW XXXXXXXXX GRS S+ A G E G R+ XXXXXXXX FPDLFGACRP + + RR R SSPPS+P AT E TRPSS+ RNR S RR LS E P TAA RW+ E G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G G G G+ EE E G G T++AXXXXXXXXXX DG ++ RW+ IDKLSRALGSTRRR S R GG R G+E ++NFFTE DLDELLHSTFFIKMCDDASWLYVEDHP+ PELNWLL+LWGGYKI PRFQGEVKQNEAHRMLFQ E+GRH+ ++RIRSRATNTFLFFLG+KQPLTWVAWDRDVVGG+WEDLKLEWVGKPQG DGVLVGDERGRVVI SR + GYVSWNGSRFTHV GREGATVFMLQRMA S
Sbjct: 1 MALVDTQGFVMAVDRSLFGPQGRRWIERKLPNVATNLAFVAVSAFGACLLVFHITREYYTSGYWAILQTPKHILNAVVLHLVARALRWHIDRMLGVNFAAGDEALPDFFGSTTLDGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTPPQPKQGR-RDSVEESTIDQEQF---GWSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLGRSASSLSLPESARPGWEQGRRS----------------------WRRSSNRLDGSGLADGFAGSDKERGENAAGALDDXXXXXXXXNHSRGDREKHTFPDLFGACRPSHHERHRRRERSLSSPPSSPSATL-ESTRPSSVGRNRXXXXXXXXPSPRRRRLSLEVPRTAADRWVDEGGNYGAGKEQRRAAGADGAARQSGCASDDGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPQ-VGASAAAGAAGEVEAGKGDVEEKEGGGRNGAKTSVAXXXXXXXXXXTGLSGSWR-DGXXXXXXXXSNSRWRSIDKLSRALGSTRRRTS-RQGGAARGEGGEGSEQKMNFFTEKDLDELLHSTFFIKMCDDASWLYVEDHPFQPELNWLLSLWGGYKIAPRFQGEVKQNEAHRMLFQAENGRHRDHVRIRSRATNTFLFFLGIKQPLTWVAWDRDVVGGEWEDLKLEWVGKPQGPDGVLVGDERGRVVIRSRPMKGYVSWNGSRFTHVPGREGATVFMLQRMAPS 735
BLAST of mRNA_C-linearis_contig86.16217.1 vs. uniprot
Match: D8LSC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC8_ECTSI) HSP 1 Score: 258 bits (660), Expect = 1.780e-73 Identity = 211/357 (59.10%), Postives = 231/357 (64.71%), Query Frame = 3
Query: 1200 FPDLFGACRPG--QNNHRRGRMPSSPPSTPVATRKEPTRPSSLDRNRAGGGRRGRLSAGRRNLSPETPHTAAHRWIQEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKR-EGGRRERGETGGEDEEGEQDGETGVGTAMAXXXXXXXXXXXXXXXXXXXD---------------GASRRWKPIDKLSRALGSTRRRASMRTGGLGRDGAPPGNEPRLNFFTEVDLDELLHSTFFIKMCDDASWLYVEDHPYVPELNWLLTLWGGYKITPRFQGEVKQNEAHRMLFQCESGRHQGNIRIRSRATNTFLFFLGVKQPLTWV 2216
FPDLFGACRP + + RR R SSPPS+P AT EPTRPSS+ RNR RR LS E P TAA RW+ E G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G E GE+ XXXXXXXXXXXXXXXX + +SRRW+ IDKLSRALGSTRRR S R GG R G+E ++NFFTE DLDELLHSTFFIKMCDDASWLYVEDHP+ PELNWLL+LWGGYKI PRFQGEVKQNEAHRMLFQ E+GRH+G++RIRSRATNTFLFFLG+KQPLTWV
Sbjct: 105 FPDLFGACRPSHHERHRRRERSLSSPPSSPSATL-EPTRPSSVGRNRXXXXXXXXXXXXRRRLSLEVPRTAADRWVDEGGNYGAGEEQQRVAGAGGAARQIGCTSDDGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSSLPQAGASXXXXXXXXXETGEEHXXXXXXXXXXXXXXXXXXXXXXXXXXSATELSGSGRDVGGSGGGRSSSRRWRSIDKLSRALGSTRRRTS-RQGGAARGEGGEGSEQKMNFFTEKDLDELLHSTFFIKMCDDASWLYVEDHPFQPELNWLLSLWGGYKIAPRFQGEVKQNEAHRMLFQAENGRHRGHVRIRSRATNTFLFFLGIKQPLTWV 459
BLAST of mRNA_C-linearis_contig86.16217.1 vs. uniprot
Match: A0A835ZHV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV2_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.080e-41 Identity = 89/203 (43.84%), Postives = 123/203 (60.59%), Query Frame = 3
Query: 1833 STRRRASMRTGGLGRDGAPPGNEPRLNFFTEVDLDELLHSTFFIKMCDDASWLYVEDHPYVPE----LNWLLTLWG-GYKITPRFQGEVKQNEAHRMLFQCESGRHQGNIRIRSRATNTFLFFLGVKQPLTWVAWDRDVVGGDWEDLKLEWVGKPQGADGVLVGDERGRVVIWSRRINGYVSWNGSRFTHVQGREGATVFMLQ 2426
+T RR R GG+ R + G + + FT EL+ S FF+++ DD SW+YVE Y P+ L W + L+ GYK+ R+ G+V ++A+RMLFQCE GR G++ +RSR TNT LF LG+++P T VAWDR+V GGDWED+++EW + G VVI +R GY+ W G RF HV R+ A+ FMLQ
Sbjct: 319 ATARRRRRRHGGIERGRSEGGLDLQPYLFTRATAHELMDSLFFMRVVDDDSWVYVEHDLYQPQEGAGLGWAMNLFHRGYKVGVRYAGDVDPHDANRMLFQCEPGRASGHVWLRSRGTNTLLFMLGLRKPRTLVAWDREVPGGDWEDMRIEWC-----------PEHNGHVVISCKRAGGYLQWTGDRFGHVDERDCASRFMLQ 510
BLAST of mRNA_C-linearis_contig86.16217.1 vs. uniprot
Match: A0A835YVS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS8_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.000e-36 Identity = 76/182 (41.76%), Postives = 117/182 (64.29%), Query Frame = 3
Query: 1905 RLNFFTEVDLDELLHSTFFIKMCDD-ASWLYVEDHPYVPE----LNWLLTLWG-GYKITPRFQGEVKQNEAHRMLFQCESGRHQGNIRIRSRATNTFLFFLGVKQPLTWVAWDRDVVGGDWEDLKLEWVGKPQGADGVLVGDERGRVVIWSRRINGYVSWNGSRFTHVQGREGATVFMLQRM 2432
R FT ELL S FFIK+ D+ +W++VED + L W ++L+ GY++ R+ G+V ++AHR++FQCE GR G++RIRSR +NT+LF LG+++PLT VAWDR+V GGDWED+++ W+ + ++ GRV+I + GY+ W G++F H ++ A+ FMLQ +
Sbjct: 428 RPRHFTAETAHELLDSMFFIKLVDEEGAWMFVEDDLHESREGGGLGWAMSLFHRGYRVGARYAGDVGPHDAHRLVFQCEPGRAAGHVRIRSRGSNTYLFMLGLRRPLTLVAWDREVAGGDWEDMRIVWLPR---------AEDEGRVLIRCKTAGGYLQWTGTKFVHTPVKDSASRFMLQSL 600
BLAST of mRNA_C-linearis_contig86.16217.1 vs. uniprot
Match: D8LSC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC9_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 4.180e-20 Identity = 42/52 (80.77%), Postives = 50/52 (96.15%), Query Frame = 3
Query: 504 ITREYYQSGYWAILQTPKHVLNAVILHLVARALRWHLDRLLGLNFAARDQAL 659
ITREYY+SGYWAILQTPKH+LNAV+LHLVARALRWH+DR+LG+NFAA D+ +
Sbjct: 9 ITREYYKSGYWAILQTPKHILNAVVLHLVARALRWHIDRMLGVNFAAGDEGM 60 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16217.1 >prot_C-linearis_contig86.16217.1 ID=prot_C-linearis_contig86.16217.1|Name=mRNA_C-linearis_contig86.16217.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=737bp MALVDTQGFVMAVDRSLFGPQGRRWIERKLPDVVTNLAFISVSAVGALFLback to top mRNA from alignment at C-linearis_contig86:250409..256166- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16217.1 ID=mRNA_C-linearis_contig86.16217.1|Name=mRNA_C-linearis_contig86.16217.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5758bp|location=Sequence derived from alignment at C-linearis_contig86:250409..256166- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:250409..256166- >mRNA_C-linearis_contig86.16217.1 ID=mRNA_C-linearis_contig86.16217.1|Name=mRNA_C-linearis_contig86.16217.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4422bp|location=Sequence derived from alignment at C-linearis_contig86:250409..256166- (Chordaria linearis ClinC8C monoicous)back to top |