mRNA_C-linearis_contig85.16152.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig85.16152.1
Unique Name	mRNA_C-linearis_contig85.16152.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig85.16152.1 vs. uniprot
Match: D7FLA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLA2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 5.930e-12
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 2

Query:   26 MPVSST---NQRQGNIFTQIAAIFS---HRPSLWTSSLASQAAKDKSVPAYNNTIASLRR 187
            MPVSS+    Q+QGNIFT I+ IFS   HRPSLWT+     AAK++SVPAYNNTIASLRR
Sbjct:    1 MPVSSSASQQQQQGNIFTHISKIFSSFTHRPSLWTN----VAAKERSVPAYNNTIASLRR 56

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig85.16152.1 vs. uniprot

BLAST of mRNA_C-linearis_contig85.16152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FLA2_ECTSI	5.930e-12	66.67	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig85	contig	C-linearis_contig85:209123..212098 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-15_004880.1
Exons	2
Model size	773
Cds size	165
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig85.16152.1	prot_C-linearis_contig85.16152.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig85 209148..211515 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930644.74318-UTR-C-linearis_contig85:209122..209147	1622930644.74318-UTR-C-linearis_contig85:209122..209147	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 209123..209147 +
1690881175.9605446-UTR-C-linearis_contig85:209122..209147	1690881175.9605446-UTR-C-linearis_contig85:209122..209147	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 209123..209147 +
1622930645.0877182-UTR-C-linearis_contig85:211515..212098	1622930645.0877182-UTR-C-linearis_contig85:211515..212098	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 211516..212098 +
1690881176.007117-UTR-C-linearis_contig85:211515..212098	1690881176.007117-UTR-C-linearis_contig85:211515..212098	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 211516..212098 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930644.7653732-CDS-C-linearis_contig85:209147..209266	1622930644.7653732-CDS-C-linearis_contig85:209147..209266	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig85 209148..209266 +
1690881175.9737225-CDS-C-linearis_contig85:209147..209266	1690881175.9737225-CDS-C-linearis_contig85:209147..209266	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig85 209148..209266 +
1622930644.9839559-CDS-C-linearis_contig85:211469..211515	1622930644.9839559-CDS-C-linearis_contig85:211469..211515	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig85 211470..211515 +
1690881175.9891212-CDS-C-linearis_contig85:211469..211515	1690881175.9891212-CDS-C-linearis_contig85:211469..211515	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig85 211470..211515 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig85:209123..212098+
coding sequence from alignment at C-linearis_contig85:209123..212098+

protein sequence of mRNA_C-linearis_contig85.16152.1

>prot_C-linearis_contig85.16152.1 ID=prot_C-linearis_contig85.16152.1|Name=mRNA_C-linearis_contig85.16152.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=55bp
MPVSSTNQRQGNIFTQIAAIFSHRPSLWTSSLASQAAKDKSVPAYNNTIA
SLRR*

mRNA from alignment at C-linearis_contig85:209123..212098+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig85.16152.1 ID=mRNA_C-linearis_contig85.16152.1|Name=mRNA_C-linearis_contig85.16152.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2976bp|location=Sequence derived from alignment at C-linearis_contig85:209123..212098+ (Chordaria linearis ClinC8C monoicous)
CCCGCCCCCTCCCACCAACAACATCATGCCAGTTTCCAGCACCAACCAGA
GGCAGGGCAACATCTTCACCCAGATCGCGGCGATTTTCTCGCACAGGCCG
TCGCTGTGGACCTCCAGTCTCGCTTCCCAGGCAGCCAAAGACAAGTGAGA
TTCAAACCCATGATGCCAGTAAGGCGCCACATGATAGAAGCCCCCGCCGT
TACCCTCGGCCTTTGCATGCTGCTTGGGGATGCTGCCCGAGTTGCGAGGG
CAGACTGCGCCCGCTGCCGATGCAGACGTGCGCCGTTTCGTCCGTCGTTT
CAACATGCGCACTCACGCATGCAAGATCTTGCCTCCAAATATTTCCGTCT
CATCTACGTCTACGTCGTTGGTTTGCAAAAGCGCATGTGCGCTAGCTATA
CCCCCACGAACGAATAAACCACCCGCGCTGTCATTGCAGCCTGTAGAGTC
GCTGTGAGTGCACTGTTGCTGTCGCGTTCATCGGTGGCGGGGAGGGGCGC
CCAAAACCGTGACAAAACTGGAATCGTGATTTCAGATTTCAAGTTTGGCC
CAACAGACCAACCGGCCCCTTGCGGCGTGTTCAACCACAATCTTACCTAG
CCAAAATTTGAGGCACAGTCTAAACCACAAACTGCGCCCGCCTCCGCAGT
GCTTGTGCTGCTGCTGTTGCTGTGGAGGGGGAGGGATTGCTCAACAGTGG
TAAACGTACGCTGCACCAGAGCCAGGGAGGGTGGGATAAAACGGTAGAAT
GGGTGTGGTGCTTGTATGGACGCGCGCAACCATGAAAACACGATTCAACT
GACACGTTGCGATCTTTACCCCCGCAACACTACGGCAGCACAGCAGTGTC
TGCCCAGCCGCACTCGGTAGTCAACGCCCTTACACCCCTGCAGGTTGATC
TCTGTTTCCCCCGCTGCACTTTTTTGCGCTATCCTGTCAAGAAGGCGTTG
GGCTTTTGTGTACAGCGTTGCTGGTTGGGCATTCGGATGGGGGGCATGCG
TCAGCGACGTTTTTCGCGCACAAAAAAACAGGAGAAGGCACCACAACCAC
CATCCGTTTGTGGATTGTTTTGTTTTTGCTTCGACCACACACCCTCTGTC
CCCGCCGCAACGGCCCCTAGGATGAACGTGGCCCGCGCGACTGCCTTTTG
GCTTTAGACTACCAAGTTATTCTTTTCCTTGAATTTTTTTTTATTTTGCT
CCCGTTTTTGTGTTGTGACGCGCCCCATATGGCGTCACAGCAACACCCTT
TATCTTTTGGTCGGAACATAACGGTCCCATGGTCGGTGTGAACGTTGAAG
TTGAGTTTCGGAGCTTCTTTGAAAATATATCTACAACAGAGACGGGAGGG
GAAACATACGGGGGGCGTGCACAGCGTTTGGTTCAGTGATGGGTCATATT
TGACCCTTCCTCTCTCGAACGGAGTCATCTGCTGCTGTATTTTGACGAGC
TCTCTCGGGAGAGCGAGGTGTGGTTGTGTGCCGCCGTTGATTGCAGCAGT
ACAGTAATCCAAAAATACACGGCTGTGGCTACTTCTCAGCCACCGCCCGC
GTCACTGTACTTGATGGTCGGCTCAAGGTTCGTTCACAGCCTCGATTATT
GTTCCCATTAGTACGCACACTGCCACATGTTTGATACGCCCCCCCCCCCC
CTCTAGATCACGTGCAGATACCTACATACGCAGGGCACGCACCAGCAACC
CTTCAGACGCTTGTTGTCCCTAAAAAAAGAAATAATATTTAGAGCGAGAT
GCGCAGCCGAGCCATCCCACTGCTGATGCAACAGAGTCTACCTCCACAAC
CAACACTATCCAGAATTGTTGAGAGTTTAAAAACAATATCGGTCGATCGT
TGCGAAACAATGTCAAGTGTTCGCCCACTTGGTTATTGGTACAGACAGTC
TACCCGACACGACGGCAAATAAGACTCGTGCGTGTCTGGATGAAGTCGCA
CTGAACCGATTGATGCATCCCGCTGCATGGCTGGGGTGTACACCGCGTTC
TACGTGTTCCCCTTACCTTTTTATGATGTGGTGCCCTCGTATCGTATGTG
TGCACTTGCGCCACGCTTCCTCAAGAAAAACAGCAGCTGTTGTGTCGAAC
CCACAATATTGTCTAGCCTAGTAAATATTTCCATCGCCCCATGTATTTTT
CGATGAAACCGCTGCTGTGGTTCTTCAACGCTACTCCAACCTCCCGTATG
TACCTTCCACTGTTGCCTGTAGAATATTTTTCAAGTACTTCGGCTGTGTG
TGATTTTGTTCAGTTCAGTTCAGTTCAGGATCTGATGCCCTCCCCTCCCC
TCCCTAACCCAACCGGAACTTTCGTAACGGCCGTAACGGTAAAACAGGAG
CGTCCCGGCGTACAACAACACTATCGCCAGCCTTCGCCGCTAGCAGGATA
AGGGGGTATAGTCATGTTCATGATGATCATGAGATGACACGATACGATCG
AGATTTTGCCGTTTCAGAGGAGGAGGGCGGCGGCGAATCGAATCGAGTGA
AGAATGCAACCGTGTGTCTTTGCGGACGGCGATCGAGTAGGCCGTTGCGG
AGGTTGAGATGGCGTTGAGGTGACCCAGCTGCGTGCTGCAGATGCGCCCG
ATGTTGTAGTAGACGGGGTGTGATTTTGCTTGTAGTATTGGTACCGTATG
ATGACATGCCGACACCAGAGTGGGCGAAACGACGAGGCATCACCCTCGAC
GACCTTGTGGTGATGCGTCGTTTTGTGTTTTATGCGATGCCTTCCCACTC
TTTTCTTTTCATTCGATACTGCTGTGTTGTAGCTTCTTTTTGTTCGTTCG
GGCCGATGATGCCCAATGTCCAATACAATTTTGCCTCTGCCGGCGTAGAG
GGGAATAGCAAAAGATAGCCTTGAGGTGGCCGTTCCGATAACTTTCATGC
TTTTTGTGTACACGCTGAGGGAGGAAAGAGAGCAGAGTACAGTAAGGGGT
AGAGAAAAAGTACGATAGGTACATAG

Coding sequence (CDS) from alignment at C-linearis_contig85:209123..212098+

>mRNA_C-linearis_contig85.16152.1 ID=mRNA_C-linearis_contig85.16152.1|Name=mRNA_C-linearis_contig85.16152.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at C-linearis_contig85:209123..212098+ (Chordaria linearis ClinC8C monoicous)
ATGCCAGTTTCCAGCACCAACCAGAGGCAGGGCAACATCTTCACCCAGAT
CGCGGCGATTTTCTCGCACAGGCCGTCGCTGTGGACCTCCAGTCTCGCTT
CCCAGGCAGCCAAAGACAAATGCCAGTTTCCAGCACCAACCAGAGGCAGG
GCAACATCTTCACCCAGATCGCGGCGATTTTCTCGCACAGGCCGTCGCTG
TGGACCTCCAGTCTCGCTTCCCAGGCAGCCAAAGACAAGAGCGTCCCGGC
GTACAACAACACTATCGCCAGCCTTCGCCGCTAGGAGCGTCCCGGCGTAC
AACAACACTATCGCCAGCCTTCGCCGCTAG