mRNA_C-linearis_contig85.16151.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16151.1
Unique NamemRNA_C-linearis_contig85.16151.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig85.16151.1 vs. uniprot
Match: D7FLA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLA3_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 1.760e-86
Identity = 141/170 (82.94%), Postives = 153/170 (90.00%), Query Frame = 3 
Query:  156 IIFPNKN--QIVTMKYRGLSINYAGMGVDMKVDMGLEVFNPNYVPATLKGIVMTMFHEDLAGEEAPFGVVTFSGDAAARLPARGSAIVNAQMEVVSLPTSMAMSITKDVSDGGVIVSRALAIMDVTVMGGDILIEADCLQHMQADVFPIKINEINCKYYYKNVRVMMLPP 659
            ++FP     QIV MKYRGLS+N A +GVDMK+DMGLEVFNPNYVPATLKGIVMTMFHEDL GEEAPFGVVTF+G+ AARLPARGSA+V AQMEVVSLPTSMAM I KDV+DGGVIVSRA A MDV VMGGDILIEADC+QHMQADVFPIKINEI+CKYYYKNVRV +LPP
Sbjct:   19 VMFPRAPTWQIVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVADGGVIVSRASAFMDVKVMGGDILIEADCVQHMQADVFPIKINEIDCKYYYKNVRVPVLPP 188
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BLAST of mRNA_C-linearis_contig85.16151.1 vs. uniprot
Match: A0A836CLA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.660e-21
Identity = 64/164 (39.02%), Postives = 100/164 (60.98%), Query Frame = 3 
Query:  177 QIVTMKYRGLSINYA-GMGVDMKVDMGLEVFNPNYVPATLKGIVMTMFHEDLAGEEAPFGVVTFSGDAAARLPARGSAIVNAQMEVVSLPTSMAMSITKDVS-DGGVIVSRALAIMDVTVMGGDIL--IEADCLQHMQADVFPIKINEINCKYYYKNVRVMMLP 656
            QI   KY  +S NY   M  +M+++  LE++N N + A +  I + + H D  G E PF  +  +GD A  LPARGS      M + +L  +MA ++ +D + +GG +V+RA + MDV+V+GG     +EA+C+QH++AD FP+++  I+C+YY    RV MLP
Sbjct:   27 QIRGQKYTSVSFNYDFTMAAEMELE--LELYNDNLLSAHVNAIELEVLHRDAWGVERPFARIHVAGDFA--LPARGSVRRAGTMVMDALAPAMAGALARDAAANGGTLVTRAHSTMDVSVLGGAARARLEAECVQHLRADAFPMEVTYIDCRYYMGRHRVPMLP 186
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLA3_ECTSI1.760e-8682.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLA5_9STRA1.660e-2139.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:200370..204217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_004890.1
Exons4
Model size1912
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16151.1prot_C-linearis_contig85.16151.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 201620..204143 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930644.5951908-UTR-C-linearis_contig85:200369..2016191622930644.5951908-UTR-C-linearis_contig85:200369..201619Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 200370..201619 -
1690881175.8835428-UTR-C-linearis_contig85:200369..2016191690881175.8835428-UTR-C-linearis_contig85:200369..201619Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 200370..201619 -
1622930644.686075-UTR-C-linearis_contig85:204143..2042171622930644.686075-UTR-C-linearis_contig85:204143..204217Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 204144..204217 -
1690881175.9417465-UTR-C-linearis_contig85:204143..2042171690881175.9417465-UTR-C-linearis_contig85:204143..204217Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 204144..204217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930644.6072245-CDS-C-linearis_contig85:201619..2017431622930644.6072245-CDS-C-linearis_contig85:201619..201743Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 201620..201743 -
1690881175.8979998-CDS-C-linearis_contig85:201619..2017431690881175.8979998-CDS-C-linearis_contig85:201619..201743Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 201620..201743 -
1622930644.621103-CDS-C-linearis_contig85:202310..2024261622930644.621103-CDS-C-linearis_contig85:202310..202426Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 202311..202426 -
1690881175.9074502-CDS-C-linearis_contig85:202310..2024261690881175.9074502-CDS-C-linearis_contig85:202310..202426Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 202311..202426 -
1622930644.6369202-CDS-C-linearis_contig85:203260..2034161622930644.6369202-CDS-C-linearis_contig85:203260..203416Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 203261..203416 -
1690881175.9194353-CDS-C-linearis_contig85:203260..2034161690881175.9194353-CDS-C-linearis_contig85:203260..203416Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 203261..203416 -
1622930644.6723118-CDS-C-linearis_contig85:203951..2041431622930644.6723118-CDS-C-linearis_contig85:203951..204143Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 203952..204143 -
1690881175.932237-CDS-C-linearis_contig85:203951..2041431690881175.932237-CDS-C-linearis_contig85:203951..204143Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 203952..204143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16151.1

>prot_C-linearis_contig85.16151.1 ID=prot_C-linearis_contig85.16151.1|Name=mRNA_C-linearis_contig85.16151.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp
MRAWLLSNTFPLLHDNVCRLVPPHEYLIIFPNKNQIVTMKYRGLSINYAG
MGVDMKVDMGLEVFNPNYVPATLKGIVMTMFHEDLAGEEAPFGVVTFSGD
AAARLPARGSAIVNAQMEVVSLPTSMAMSITKDVSDGGVIVSRALAIMDV
TVMGGDILIEADCLQHMQADVFPIKINEINCKYYYKNVRVMMLPP*
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mRNA from alignment at C-linearis_contig85:200370..204217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16151.1 ID=mRNA_C-linearis_contig85.16151.1|Name=mRNA_C-linearis_contig85.16151.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3848bp|location=Sequence derived from alignment at C-linearis_contig85:200370..204217- (Chordaria linearis ClinC8C monoicous)
AACGCACCCCCCACCCCTTCCCATATTTCCCCTTTCCTCTGGAGCCCCCT
TGCTACTTACCAAACTCGGTACCGATGCGCGCCTGGTTGCTTTCAAACAC
ATTTCCCCTGCTTCACGATAATGTTTGCCGCCTTGTCCCACCGCACGAAT
ACTTGATAATCTTCCCAAATAAAAACCAGATTGTGACCATGAAGTACCGA
GGCCTGTCCATCAACTACGCGGGCATGGGTGTGGACATGAAGGTCGACAT
GGGCCTGGAAGTTTTCGTGAGTCGATTCGAGTCGATTCGAGTCGATTCGA
GTCGATTCAAGTCTTTGCGAGTGTTGTGTACTACATGTATCGGGGTGTAG
CTGGAGTCAGTCGACCGGTGCATGTCCAGGTCGTGCTGTGCGGCAACAGG
GTGGTGGTGTAACGTTGTTTTCGACAGCGTTAGCGGAGATAGCCATCCCT
TGCCCTGCTGGTACTGGTGTTGGTGCCGATGCTGATGCTGATGCTGATGC
TGGTGCTGGTGCTGATACCGCCCCAACGCGTGGTTCCATGGACACATCTT
GTGTCATCTCTCGCGACTATTTTTTGTGTGTAGCTTGGGTGGGACCTGAT
TGCAGGCTGCTGGTCACCACCGCAGGTCGGCTCATGACACCCGCTGCCTG
CGGTAAATTGTGCTCCGAACAGTGCTCTCTTCGCTGTACCGTGCCGTGCC
GTGCCGTGCGGTGCGGTGCGGTGCACGGCCTAGCCCTAACCCTAACCTAA
CCTCCATGTTCAATTCGATTCTATTCGGTTCGATGTGCGATTTCCCCCCA
GAACCCGAATTACGTCCCGGCTACGCTGAAAGGCATCGTGATGACCATGT
TTCACGAGGACCTTGCGGGGGAGGAGGCGCCGTTTGGGGTGGTTACCTTC
AGCGGCGACGCTGCGGCCAGATTGCCAGCGAGGGGTTCGGCGATAGTCAA
TGCACAGGTACCTGGTACCAGCTAAACAGCTACACTTACGTGCAGCAGCT
AATAAGAGTGTACGGTTGACCAGAAAGCTGGGAATGCGTCCCTTCATCTC
TCCCTCAGGTGTTGTACTTGACCCGTTTGTGGCGGTGTCGTCTTGGTTAG
CATCGTCTAAGTTCGTGGACGTATACAGCCTCTACCGTTTGTGTTTGACT
TGTTTACTGACGGGCTTTTGTTTTCCGCGATGCATCTTCTCGGATGGTGT
CGGGTGTACGTGCTCTCTACTTTTTTGCCATCGGACCATCATGTGTGTGC
AGTCCTTGTCGCTGTTGCTGCTCAAGTCGGACTGGGAGAGAATGGCGACC
AGTCGGTGCTTTGTAACTTTCGTTTCAAGAGTGGGACTTGCAGGCAGTGT
GCGTACCTGTTTCTGTTGCTTGGCCCGTCATGGCGCAACCAACATCCGCT
TGTTCCCCCTACTTCGCCTCAGCTGTGTGTGTCCTGCCGGCCGGCCGTTT
CAGAAGTCTGTTGTTGCTCGAGATCCTATCCTCTCTTCCCCTCCTCTCCC
CGCGATAATATGCATCTACACACCTGGGTTGATAAGTGGAAGTTGTAGCT
CCCCGACCCCCCGTCCCGCTCCCTCCTAGTCTACCTTCACCGATCATCTG
CGTCGTAATTTTTTGTCTGGTGCATGTTCGTAACGAATATTTTCTTTTTC
TTGGATTTGTTTTTTTGTTCCCACTCTGTTTAGCTATATGCTTTGTGTCA
TCAGTCAGTTACTTTATCGTCACGCACATATGTAGATCTACGTAGATCTA
CCGAACCAAACATTATTGGACGTTTGCCTTTGTCTTCGCAGATGGAAGTC
GTATCGCTGCCGACAAGCATGGCGATGAGCATCACTAAAGACGTATCGGA
CGGGGGAGTTATCGTCAGTCGAGCCTTGGCCATCATGGACGTAACCGTCA
TGGGGGGGTAAGTAGCCGTCGTTGAGAGTACGAGTGAGAGCAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGGTAAGGAGGAAATACAAAATCTATTTCCT
CTCAAAAAATTTGGCCAATCAGAAAACTGCGGGCACCTTCTCCCTTTTCT
CTCTCTCTCTACCTGGTGAGCATCACCGTAGAAGCGGGCGAATCGCCTGT
AAAGGCCATTTATGGATGAGCCGTTTCCTGTACCGTGCGTTGGATGGATA
CACCTGTTCATCGCCGCTGTTTCGCCCTGTCTCTGCATGGTATAAAGAGT
GCTGCTGTCGTGTAATGGTTTTGCTCAACGCTTGTGATGCAACTGTGCGT
TTGGCCTTTTTTACCACTCGATCATCCCTACTTTTGTTTAGTTGTGGCAA
ATCTTGACTCGCCTTTCTACTCTTTTCTCTTTCTTGTACGCACTGAACCC
AACATTCCACCGGACCTATGTATGTATGTCCAACGTCGACACATGCCTGA
CCACCCCCTGTCGCTCTCTGCTTCTTCAATTGGCGTCTCTCCTGTTTCTT
TTGCGTGATCGTGGCATGTGGCAGGGACATCTTGATCGAGGCGGACTGTT
TGCAGCACATGCAGGCGGACGTGTTCCCAATCAAGATCAACGAAATAAAC
TGCAAGTATTATTACAAGAACGTCAGGGTGATGATGCTACCTCCATAGCA
TCATGCGCCGCCATGCAGTGAATCTCCAAAATAATCAGCTAAATAGCTTG
AGAGGGAGACCGCTGGCTGTGTCAGGTGTACGATAGCATCCCTGCATGGT
AGTAGGCGTATCATACTGCAGTGCTTTTTTTTCGAGTTAGGCATTTGTTT
GGCCTTTCGAAAGCCGACTGATTAAAGTACTCGAGGATGAGGGCTAGACC
ACAGAGCAGTACTGCTGTAGTACGCCCAAGCGTGGAACGGGGATGGTTTC
AGGAGGGCCTCGTGGAGAGACCTCTACGGCAAAGCGATCGATCAATCGTT
TTGGTGTTGCCGTCGTCATAACGTTGACGGGGGGCTCTCGGCGTATCCAT
CACATGCATGCATAGTCTTGATCTTGCGTCTGTGGGCCAACCGCTGCAAA
GCCGACGATTGCAAGACACAAGATTCAGACACGGCAGGGTGTGTACTGCC
GTACTGCCGAACAATATAGAGGGAGATGCGATAGTTCAGGGGGTGGGGAC
TCGGCACTGTTGTATGATTCTGAGGCGACCGCGCAGCGAGCCACACGTCG
CCACGACAGTCTCTAACGGATTTTCGAGCGGCGACGTTCAATGCGTTGCT
CGTGGCCTTCAAATCTCGATGAGGGGGGTTGTGGGGTGCACGGGGAATGT
TGCGTTGACTTTTTGAGGAGGTGGTGCTGTAAGGGGTTCTCTCTCTGCCT
TGGTTGGAGCCCTATTTTCCCTGCGCAATTTAAGGCCTTTGTCGGGCCCG
CCCGAAAGTTTCTGTTTTACGTTATCATACCTGCGTGAGACTTATTTCTG
TTGCGGGTGTGTGTGCGTGTGTGGATGTGTCCAATAGCAAAGGCGGTGGT
TGCGCGTCCTATGACAGGTTGCTGGTTTCAATCGAAAGCAGTTTTTGTTT
TGGTTTTCCTGGGGGAAGAAATTATGAAATTTTGCAACTTGGTTTTGTTT
TGTTTTGCCTTTGGGTAGGGCGCGCACTTTTGCCCGATGTCGTAGACATC
AGTCAGTGGGGAGGGGGGTACGGTGTGGATGATGATGAGTGTGTCGCGTG
TTGTTTTGTGTCCTTTGGAGACGCCACTGCGGCCGCGTGACTTGAAATAC
CGCGTGAGGTACCGGAGGCTGCTCACGATCGTGCAAGCCGTAGTCGTTGA
ACCACGGACTCCGCGTCCCTACGAAGCCGAGATGTGGCACACACACTTGA
GTGCTCCCCCGTTCTTCGTTCGCGAAGATGCAGCACACCAAATTCGAC
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Coding sequence (CDS) from alignment at C-linearis_contig85:200370..204217-

>mRNA_C-linearis_contig85.16151.1 ID=mRNA_C-linearis_contig85.16151.1|Name=mRNA_C-linearis_contig85.16151.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at C-linearis_contig85:200370..204217- (Chordaria linearis ClinC8C monoicous)
ATGCGCGCCTGGTTGCTTTCAAACACATTTCCCCTGCTTCACGATAATGT
TTGCCGCCTTGTCCCACCGCACGAATACTTGATAATCTTCCCAAATAAAA
ACCAGATTGTGACCATGAAGTACCGAGGCCTGTCCATCAACTACGCGGGC
ATGGGTGTGGACATGAAGGTCGACATGGGCCTGGAAGTTTTCATGCGCGC
CTGGTTGCTTTCAAACACATTTCCCCTGCTTCACGATAATGTTTGCCGCC
TTGTCCCACCGCACGAATACTTGATAATCTTCCCAAATAAAAACCAGATT
GTGACCATGAAGTACCGAGGCCTGTCCATCAACTACGCGGGCATGGGTGT
GGACATGAAGGTCGACATGGGCCTGGAAGTTTTCAACCCGAATTACGTCC
CGGCTACGCTGAAAGGCATCGTGATGACCATGTTTCACGAGGACCTTGCG
GGGGAGGAGGCGCCGTTTGGGGTGGTTACCTTCAGCGGCGACGCTGCGGC
CAGATTGCCAGCGAGGGGTTCGGCGATAGTCAATGCACAGAACCCGAATT
ACGTCCCGGCTACGCTGAAAGGCATCGTGATGACCATGTTTCACGAGGAC
CTTGCGGGGGAGGAGGCGCCGTTTGGGGTGGTTACCTTCAGCGGCGACGC
TGCGGCCAGATTGCCAGCGAGGGGTTCGGCGATAGTCAATGCACAGATGG
AAGTCGTATCGCTGCCGACAAGCATGGCGATGAGCATCACTAAAGACGTA
TCGGACGGGGGAGTTATCGTCAGTCGAGCCTTGGCCATCATGGACGTAAC
CGTCATGGGGGGATGGAAGTCGTATCGCTGCCGACAAGCATGGCGATGAG
CATCACTAAAGACGTATCGGACGGGGGAGTTATCGTCAGTCGAGCCTTGG
CCATCATGGACGTAACCGTCATGGGGGGGGACATCTTGATCGAGGCGGAC
TGTTTGCAGCACATGCAGGCGGACGTGTTCCCAATCAAGATCAACGAAAT
AAACTGCAAGTATTATTACAAGAACGTCAGGGTGATGATGCTACCTCCAT
AGGGACATCTTGATCGAGGCGGACTGTTTGCAGCACATGCAGGCGGACGT
GTTCCCAATCAAGATCAACGAAATAAACTGCAAGTATTATTACAAGAACG
TCAGGGTGATGATGCTACCTCCATAG
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