mRNA_C-linearis_contig84.16139.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16139.1
Unique NamemRNA_C-linearis_contig84.16139.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig84.16139.1 vs. uniprot
Match: A0A6H5L336_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L336_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.770e-21
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  304 QMTVDARSARSAAIQQQQLATPGNPQGGERCHKGATAGRDPHHDHLHCAFWICSNCKEAGHRSSRCPNPFAP 519
            QM  D R+ R+ A+QQ+QLA PG P  GE CHK   A RDP+H HL CAFWIC NCKEAGHR + CPNP  P
Sbjct:  399 QMLADVRNQRNLALQQRQLANPGVPGQGETCHKCRAANRDPNHSHLTCAFWICGNCKEAGHRRAACPNPTVP 470
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BLAST of mRNA_C-linearis_contig84.16139.1 vs. uniprot
Match: A0A6H5KX13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX13_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.100e-17
Identity = 41/72 (56.94%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:  304 QMTVDARSARSAAIQQQQLATPGNPQGGERCHKGATAGRDPHHDHLHCAFWICSNCKEAGHRSSRCPNPFAP 519
            QM  D R+ R+ A+ Q+QLA PG P   E CHK     RDP+H HL CAFWIC NCKEAGHR + C NP  P
Sbjct:  227 QMLADVRNQRNLALLQKQLANPGVPGQSETCHKCRAGHRDPNHPHLTCAFWICGNCKEAGHRRAACQNPTVP 298
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L336_9PHAE6.770e-2162.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX13_9PHAE1.100e-1756.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:768503..769164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size663
Cds size522
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.4223514-CDS-C-linearis_contig84:768502..7690241622930631.4223514-CDS-C-linearis_contig84:768502..769024Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 768503..769024 +
1690881168.8108242-CDS-C-linearis_contig84:768502..7690241690881168.8108242-CDS-C-linearis_contig84:768502..769024Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 768503..769024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.4390466-UTR-C-linearis_contig84:769024..7691641622930631.4390466-UTR-C-linearis_contig84:769024..769164Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 769025..769164 +
1690881168.8203309-UTR-C-linearis_contig84:769024..7691641690881168.8203309-UTR-C-linearis_contig84:769024..769164Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 769025..769164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16139.1prot_C-linearis_contig84.16139.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 768503..769024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16139.1

>prot_C-linearis_contig84.16139.1 ID=prot_C-linearis_contig84.16139.1|Name=mRNA_C-linearis_contig84.16139.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp
PGGTLPTPVPARLDESQRYTGPPEHGSPDHRPAAAAAGPGPSPRQRGHPS
PRAAGERRPLHSRHVGHVGSQIPRPHTAQPKRRRRPRRLWRGRGSRRPWP
YQMTVDARSARSAAIQQQQLATPGNPQGGERCHKGATAGRDPHHDHLHCA
FWICSNCKEAGHRSSRCPNPFAP*
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mRNA from alignment at C-linearis_contig84:768503..769164+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16139.1 ID=mRNA_C-linearis_contig84.16139.1|Name=mRNA_C-linearis_contig84.16139.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=662bp|location=Sequence derived from alignment at C-linearis_contig84:768503..769164+ (Chordaria linearis ClinC8C monoicous)
CCGGGCGGGACCCTTCCCACCCCCGTTCCTGCACGCCTCGACGAATCTCA
GCGCTATACCGGCCCTCCCGAACATGGGAGCCCTGACCATCGGCCAGCGG
CAGCGGCAGCGGGGCCGGGGCCGTCGCCGCGGCAGCGCGGTCACCCTTCC
CCTCGCGCAGCAGGCGAGCGCCGGCCACTACACTCCCGCCACGTCGGCCA
CGTCGGGAGCCAGATACCTCGCCCCCACACAGCCCAGCCGAAGCGGCGGC
GGCGGCCGCGGCGGCTGTGGCGGGGCCGGGGCTCGCGGAGGCCCTGGCCG
TATCAGATGACGGTTGACGCCCGGAGCGCCCGCAGCGCAGCCATACAGCA
GCAACAGTTGGCGACCCCAGGAAATCCTCAAGGCGGCGAGCGATGCCACA
AGGGCGCCACAGCCGGCCGCGACCCGCACCACGACCACCTGCATTGCGCC
TTCTGGATCTGCAGCAACTGTAAAGAAGCGGGCCATCGTAGCAGCAGATG
TCCGAACCCGTTCGCGCCGTAGACACGTCGTGCCGTGGTGGCGCGCGCGT
AGGCAGATGCTACACGTTTGCGGCAGAGCGTCACGACGGACGTCCTAGTA
GCACGCTGGCGGTAGTACGGTTTCTAGACGGGTGGCGGCATGGGCTCGGA
GACCTAAGGGCG
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Coding sequence (CDS) from alignment at C-linearis_contig84:768503..769164+

>mRNA_C-linearis_contig84.16139.1 ID=mRNA_C-linearis_contig84.16139.1|Name=mRNA_C-linearis_contig84.16139.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at C-linearis_contig84:768503..769164+ (Chordaria linearis ClinC8C monoicous)
CCGGGCGGGACCCTTCCCACCCCCGTTCCTGCACGCCTCGACGAATCTCA
GCGCTATACCGGCCCTCCCGAACATGGGAGCCCTGACCATCGGCCAGCGG
CAGCGGCAGCGGGGCCGGGGCCGTCGCCGCGGCAGCGCGGTCACCCTTCC
CCTCGCGCAGCAGGCGAGCGCCGGCCACTACACTCCCGCCACGTCGGCCA
CGTCGGGAGCCAGATACCTCGCCCCCACACAGCCCAGCCGAAGCGGCGGC
GGCGGCCGCGGCGGCTGTGGCGGGGCCGGGGCTCGCGGAGGCCCTGGCCG
TATCAGATGACGGTTGACGCCCGGAGCGCCCGCAGCGCAGCCATACAGCA
GCAACAGTTGGCGACCCCAGGAAATCCTCAAGGCGGCGAGCGATGCCACA
AGGGCGCCACAGCCGGCCGCGACCCGCACCACGACCACCTGCATTGCGCC
TTCTGGATCTGCAGCAACTGTAAAGAAGCGGGCCATCGTAGCAGCAGATG
TCCGAACCCGTTCGCGCCGTAGCCGGGCGGGACCCTTCCCACCCCCGTTC
CTGCACGCCTCGACGAATCTCAGCGCTATACCGGCCCTCCCGAACATGGG
AGCCCTGACCATCGGCCAGCGGCAGCGGCAGCGGGGCCGGGGCCGTCGCC
GCGGCAGCGCGGTCACCCTTCCCCTCGCGCAGCAGGCGAGCGCCGGCCAC
TACACTCCCGCCACGTCGGCCACGTCGGGAGCCAGATACCTCGCCCCCAC
ACAGCCCAGCCGAAGCGGCGGCGGCGGCCGCGGCGGCTGTGGCGGGGCCG
GGGCTCGCGGAGGCCCTGGCCGTATCAGATGACGGTTGACGCCCGGAGCG
CCCGCAGCGCAGCCATACAGCAGCAACAGTTGGCGACCCCAGGAAATCCT
CAAGGCGGCGAGCGATGCCACAAGGGCGCCACAGCCGGCCGCGACCCGCA
CCACGACCACCTGCATTGCGCCTTCTGGATCTGCAGCAACTGTAAAGAAG
CGGGCCATCGTAGCAGCAGATGTCCGAACCCGTTCGCGCCGTAG
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