prot_C-linearis_contig84.16139.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16139.1
Unique Nameprot_C-linearis_contig84.16139.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length174
Homology
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BLAST of mRNA_C-linearis_contig84.16139.1 vs. uniprot
Match: A0A6H5L336_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L336_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.740e-21
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0 
Query:  102 QMTVDARSARSAAIQQQQLATPGNPQGGERCHKGATAGRDPHHDHLHCAFWICSNCKEAGHRSSRCPNPFAP 173
            QM  D R+ R+ A+QQ+QLA PG P  GE CHK   A RDP+H HL CAFWIC NCKEAGHR + CPNP  P
Sbjct:  399 QMLADVRNQRNLALQQRQLANPGVPGQGETCHKCRAANRDPNHSHLTCAFWICGNCKEAGHRRAACPNPTVP 470
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BLAST of mRNA_C-linearis_contig84.16139.1 vs. uniprot
Match: A0A6H5KX13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX13_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.120e-18
Identity = 41/72 (56.94%), Postives = 47/72 (65.28%), Query Frame = 0 
Query:  102 QMTVDARSARSAAIQQQQLATPGNPQGGERCHKGATAGRDPHHDHLHCAFWICSNCKEAGHRSSRCPNPFAP 173
            QM  D R+ R+ A+ Q+QLA PG P   E CHK     RDP+H HL CAFWIC NCKEAGHR + C NP  P
Sbjct:  227 QMLADVRNQRNLALLQKQLANPGVPGQSETCHKCRAGHRDPNHPHLTCAFWICGNCKEAGHRRAACQNPTVP 298
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16139.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L336_9PHAE1.740e-2162.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX13_9PHAE3.120e-1856.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 153..169
e-value: 0.0093
score: 23.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 154..169
score: 8.631

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:768503..769024 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16139.1mRNA_C-linearis_contig84.16139.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 768503..769164 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16139.1 ID=prot_C-linearis_contig84.16139.1|Name=mRNA_C-linearis_contig84.16139.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp
PGGTLPTPVPARLDESQRYTGPPEHGSPDHRPAAAAAGPGPSPRQRGHPS
PRAAGERRPLHSRHVGHVGSQIPRPHTAQPKRRRRPRRLWRGRGSRRPWP
YQMTVDARSARSAAIQQQQLATPGNPQGGERCHKGATAGRDPHHDHLHCA
FWICSNCKEAGHRSSRCPNPFAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC