mRNA_C-linearis_contig84.16106.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE) HSP 1 Score: 249 bits (636), Expect = 1.840e-64 Identity = 156/327 (47.71%), Postives = 193/327 (59.02%), Query Frame = 2
Query: 680 VADDVWEAAAVKMLRKTGMWVLLTTRDASIW*NPTKGC*WTNSL--KPEDVLRGAARLPRGERLCDDVLNVLEICRHVAMDIAFVGSRGSVRTPDNDVHKGSSAWREVMQDITIQINNVKAEPLAETAGDMDDHDRTRLAILRAGFKYLGAGDPLAQELYTALAVFPDGCAIGDSDAAVLLADKDPLTDHHNEVFGPIAILERWAVLRSDASGLYRMHDAHVGFARESLMDQGNNSQMVVV----HISLRRGGRYRRVRAAG-----------HFASVGGDGWWFSRPYDGQLVKM----DASEGSKI*AVKVVAELYEQEKKFVEL 1597
VADDVWEA+ V+ LR+TGMWVLLTTR + P + + + EDVLRGAA LP GERLCD + VLEIC VAMD AFVGS SVRT N V K + AW ++++T QI++V+ + G+ +D RLA+LRAGFKY+G DPLAQELY LAVFP+G G+SDAAVLL +++ GPI+ILERW VLR+DAS YR HDAH FAR+ LMD+ + + V HIS R A G VGG GWW RPYD QL++M A+ + AV VV LY +K EL
Sbjct: 298 VADDVWEASVVQKLRETGMWVLLTTRFPEMG-EPEERVVMDTLIPAEAEDVLRGAAELPLGERLCDASMKVLEICGRVAMDTAFVGSWTSVRTT-NGVPKSNKAWERTVEELTAQIDHVRGQMKVGNTGEDNDRAINRLAVLRAGFKYIGREDPLAQELYVKLAVFPEGFLFGESDAAVLLENEEVAK-------GPISILERWGVLRTDASEKYRTHDAHADFARKKLMDRNDLREPAVERWTEHIS-------RLDFAVGVEIFVLLPMWRALEEVGGKGWWALRPYDDQLIQMVTSNPATSYATSGAVGVVMNLYRGARKLGEL 608
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE) HSP 1 Score: 238 bits (606), Expect = 3.150e-61 Identity = 163/322 (50.62%), Postives = 190/322 (59.01%), Query Frame = 2
Query: 680 VADDVWEAAAVKMLRKTGMWVLLTTRDASIW*NPTKGC*WTNSLKP---EDVLRGAARLPRGERLCDDVLNVLE-ICRHVAMDIAFVGSRGSVRTPDNDVHKGSSAWREVMQDITIQINNVKAEPLAETAGDMDDHDRTRLAILRAGFKYLGAGD-PLAQELYTALAVFPDGCAIGDSDAAVLLADK---DPLTDHHNEVFGPIAILERWAVLRSDASGLYRMHDAHVGFARESLMDQGNNSQMVV----VHISLRRGGRYRRVRAAGHFAS----VGGDGWWFSRPYDGQLVKMDASEGSKI*AVKVVAELYEQEKKFVEL 1597
VADDVWE V L++TGMWVLLTTR I P +G + L P EDVLRGAA LPRG+RLCD + VL+ IC VAMDIAFVGS VR D+ S AW E + I I +V+ E A M+D RL ILRAGF YLG + LAQ+LY A+AVFPDG A G SDAAVLL D DP H I ILERWAVL +ASG YRMHD H+ FAR+ + DQG+ + VV IS R V A VGGDGW+ RPYD +LV M S+ SK A+ VVAELYEQE+K E+
Sbjct: 402 VADDVWEPPVVAKLKETGMWVLLTTRFPEIV-EPNEGVD-VDQLTPAEAEDVLRGAAELPRGQRLCDPAMQVLDDICGFVAMDIAFVGSWSMVRHTDD-----SGAWAEAVSKINDTIVDVR-----EDADGMNDSQVKRLGILRAGFDYLGEEEGTLAQKLYVAIAVFPDGYAFGVSDAAVLLNDTHPPDPAPHHMKVASRAIEILERWAVLTMNASGKYRMHDTHMDFARDKIRDQGDVRKPVVRRWTSRISRLDFAVGRDVYALSDIWRAVEWVGGDGWFDLRPYDKELVSM-GSDCSKSHALDVVAELYEQEQKLAEM 710
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Match: D7G330_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G330_ECTSI) HSP 1 Score: 188 bits (478), Expect = 2.650e-48 Identity = 108/207 (52.17%), Postives = 133/207 (64.25%), Query Frame = 1
Query: 217 ARLDRQPNLASVPKCVPMGQSWHTSRDRVVYKVCHILGEDEEPSMAALVGRSGAGKITAATAMVGERS-PVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDGEIHIIRNIILQGSLRG**CVGGSSS-------QNAEEDGHVGTPDYSRRLNMVKPNERVLMDELTK 813
ARL +P LA VP VPMGQSWHT RD VV +V ILG D P++AAL GRSGAGK TAA AMVGER P+ P A E E A TRLD +RA F DG++WLRVGKG G DRLP LM +LAKALHE+V++ Y+D P EDGE ++ + I+ Q SL+ C + + E G + +R +MV+PNERV +D L K
Sbjct: 156 ARLQPRPKLAPVPPGVPMGQSWHTMRDGVVDRVYDILGGDGGPAVAALGGRSGAGKTTAAAAMVGERQGPIHPLARENEEQAGTRLDRLRARFSDGVVWLRVGKGAGVADRLPLLMRKLAKALHEEVLKSYVDGPGIGEDGESYV-KKIVEQESLK---CRVVADDVWEPPVVEKLRETG-MWILLTARNPSMVEPNERVFVDRLEK 357
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Match: A0A6H5K0A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A6_9PHAE) HSP 1 Score: 171 bits (432), Expect = 4.510e-41 Identity = 110/250 (44.00%), Postives = 139/250 (55.60%), Query Frame = 1
Query: 85 SWKLRNRLHITSRRNWKLQPPTAELSEDVFTRQQQEVYLDA*PWARLDRQPNLASVPKCVPMGQSWHTSRDRVVYKVCHILGEDEEPSMAALVGRSGAGKITAATA-MVGERS-PVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAA------ED-GEIHIIRNIILQGSLRG**CVGGSSSQNAEEDGHVGTPDYSRRLNMVKPNERVLMDEL 807
SW + TSR++ + VF RQ V + A RL +P L SVP VPMGQSWHT RD VV +V ILG D P+ AAL G+ GAGK TAA A MVGER P+ P A E E ARTRLD +RA F DG++WLRVGKG GA DRLP LM +LAKALHE+V++ ++DAP A ED E+ ++ + G + +R +MV+PNE+V +D L
Sbjct: 237 SWTSSKTSYATSRQD-------KTVDNHVFLRQTPPVLVQA----RLPPRPKLVSVPPGVPMGQSWHTMRDGVVDRVYAILGGDGGPAAAALGGQRGAGKTTAAAAAMVGERQGPIHPLAHENEEQARTRLDRLRARFSDGVMWLRVGKGAGASDRLPLLMRKLAKALHEEVLKSHVDAPGVAACLVVAEDVWELPVVEKLRETG---------------------MWILLTTRNPSMVEPNEKVFVDRL 454
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Match: A0A6H5KUE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE6_9PHAE) HSP 1 Score: 146 bits (369), Expect = 4.270e-35 Identity = 90/204 (44.12%), Postives = 119/204 (58.33%), Query Frame = 1
Query: 217 ARLDRQPNLASVPKCVPMGQSWHTSRDRVVYKVCHILGEDEEPSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDGEIHIIRNIILQGSLRG**CVGGSSSQNAEEDGHVGTPDY-----SRRLNMVKPNERVLMDELTK 813
ARL +P LA VP+ +P+ QSW R V +VC ILG P++AAL GRSG GK T+A A++ ER P+ P AGETE+ ARTRLD +GEG +R P+LMH LAKA +EDVMEK +D PAA EDGE ++ + + SLR V + E + +R +MV+PNERVL+D+LT+
Sbjct: 70 ARLQPRPQLAPVPEGIPVRQSWPAVRHGVEDRVCRILGGGRRPAVAALTGRSGTGKTTSAAAVLRERGPIHPRAGETEDMARTRLD----------------RGEGDENRSPSLMHTLAKARYEDVMEKRVDTPAAGEDGESYV-NKFVSRESLRY--LVVADDVREVEVVEKLRKTGMWVLLTTRIASMVEPNERVLVDQLTQ 254
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Match: A0A6H5KU40_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU40_9PHAE) HSP 1 Score: 122 bits (307), Expect = 1.070e-24 Identity = 83/233 (35.62%), Postives = 126/233 (54.08%), Query Frame = 2
Query: 680 VADDVWEAAAVKMLRKTGMWVLLTTRDASIW*NPTKGC*WTNSLKPED---VLRGAARLPRGERLCDDVLNVLEICRHVAMDIAFVGSRGSVRTPDNDVHKGSSAWREVMQDITIQINNVKAEPLAETAGDMDDH--DRTRLAILRAGFKYLGAGDPLAQELYTALAVFPDGCAIGDSDAAVLLADKDPLTDHHNEVFGPIAILERWAVLRSDAS-GLYRMHDAHVGFARESL 1360
VADDVWE + MLR++GM L+T+RD + + + E+ +L+ AA+L GE ++ +L++C +VAM++ FVG +R+ D + AW E+ +I +++ + GD DD + R I R G+K G+GD + LY +L + P+G A SDA++LL D N +A LERWAV+R ++S G YRMHDAH FAR+ L
Sbjct: 316 VADDVWEPEVLDMLRQSGMKALITSRDYELTEASGGKAVVMDHVTEEEGMLILQKAAKLRSGESPPNEARKILDLCNYVAMELNFVGRLSMLRS-QVDGTQWLRAWNEIRSEIGAEVS--------DPGGDFDDWAASKRRDVIFRVGYKDFGSGDVRNKILYLSLGILPNGYAFRVSDASLLLFGACQGRDMEN-AGDVVADLERWAVVRLESSDGTYRMHDAHSEFARKIL 538
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Match: A0A6H5L204_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L204_9PHAE) HSP 1 Score: 110 bits (276), Expect = 8.420e-22 Identity = 65/119 (54.62%), Postives = 70/119 (58.82%), Query Frame = 2
Query: 821 DVLRGAARLPRGERLCDDVLNVLEICRHVAMDIAFVGSRGSVRTPDNDVHKGSSAWREVMQDITIQINNVKAEPLAETAGDMDDHDRTRLAILRAGFKYLGAGDPLAQELYTALAVFPD 1177
+VLRGAA LPR LCDD L VLE VAMDIAFVGS SVRTPD+ K S AW +++I Q V D D RLAILRAGF YL PLAQELY LA FPD
Sbjct: 20 NVLRGAANLPRDGDLCDDALKVLETYGGVAMDIAFVGSWSSVRTPDSCAPKSSWAWTRAVEEIEAQGGGVGV-----------DRDANRLAILRAGFMYLARDYPLAQELYDKLAAFPD 127
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.200e-21 Identity = 61/132 (46.21%), Postives = 82/132 (62.12%), Query Frame = 1
Query: 241 LASVPKCVPMGQSWHTSRDRVVYKVCHILGEDEEPSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDG 636
+A+VP P+ SWH +RDRVV V L + P + LVGRSG+GK T A ++VGE S R ET + RL+ VR F DG++WLRVG+G G+ +R+PALM +LAK + ED+ Y AP A+ G
Sbjct: 219 VAAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQTPQVVGLVGRSGSGKTTCAASIVGE-STGRRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPTG 349
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 5.200e-11 Identity = 52/148 (35.14%), Postives = 72/148 (48.65%), Query Frame = 1
Query: 220 RLDRQP-NLASVPKCVPMGQSWHTSRDRVVYKVCHILGEDEEPSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDGEIHIIRNI 660
+L + P +A+VPK P +SWH R V V L D P + LVG SGAGK TAA+A+V VR F DGI+WL V EG D LP LM +LA+ + ED+ P+ ++DG ++ + +
Sbjct: 192 QLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIVSSIV-------------------VRETFSDGIVWLPVN--EGVHDNLPCLMLQLAQMVFEDIGGSVGRRPSGSDDGLAYVKQQV 318 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16106.1 >prot_C-linearis_contig84.16106.1 ID=prot_C-linearis_contig84.16106.1|Name=mRNA_C-linearis_contig84.16106.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=211bp MDIAFVGSRGSVRTPDNDVHKGSSAWREVMQDITIQINNVKAEPLAETAGback to top mRNA from alignment at C-linearis_contig84:408353..411632- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16106.1 ID=mRNA_C-linearis_contig84.16106.1|Name=mRNA_C-linearis_contig84.16106.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3280bp|location=Sequence derived from alignment at C-linearis_contig84:408353..411632- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:408353..411632- >mRNA_C-linearis_contig84.16106.1 ID=mRNA_C-linearis_contig84.16106.1|Name=mRNA_C-linearis_contig84.16106.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at C-linearis_contig84:408353..411632- (Chordaria linearis ClinC8C monoicous)back to top |