mRNA_C-linearis_contig83.16063.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig83.16063.1 vs. uniprot
Match: D7G5H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H2_ECTSI) HSP 1 Score: 724 bits (1868), Expect = 9.620e-239 Identity = 504/832 (60.58%), Postives = 549/832 (65.99%), Query Frame = 2
Query: 1661 MTTTEIAFCAMRMYSHFRRTEGNYKRLTVMQNAENVPPVYEMIWQCDSVSEKNPKGGSRFFSSTDGTDAEQQKSLLACLLALSWDGSVSSRTTLQRALTPTKPSKVPAPEDIFWDEFKDNTDALSGDDEMVVVARVVLLIADSANKPGQDEASSKTD-----------GGKEDESGSIEHGDVMQALSGAHLREIGIAIKEARPGWQEAHVQLVSVLLVIAYLEEGAKNTLPGGKRPDPLSSLEWVTLLTPEALDAFLVEKLETRRALVELDLEPSGLVIKHDDDGEVERVEPAVVAEKKAPNLGSWIGSRGHQKILPKSSGRPDRKASSRKHRRHRSTESLGSGGGDTKPSPVVITTVLNRKASADGKDTRGVATASAPXXXXXXXXXXXXXXXXXXXXXXXXTERNSLRTIAQQRTPSSSGGPGAAAKTSRDAGVSAESGGGDFSSVPPKLTIDPDEFAVRVPAQGSSIRSELSRGMSPAGSQTSSVVTRVYAPSSAG--DQGDFSRGGASWAMEGSD------GRQSPGNESAMSQVSIAASRFNSSPTN-AFGAQLRAPSAGSFVPGATGLHKPASSTALTAHAVDDTNSCVGGRGGAAAMSAADSGSAIVPVGAAGTEMGFSQDLTGMT-----RGDSESRLRLPSNFSEVERSDAGFSDAASRYDGTPAFNQQ---------GSRSGGGSGARSN--PGGLVLEPATPISAAGSRFDTSSPGSAMTFTSRVGIGSPTAAAAGARGALHGGAGDGPFTGRSVASSMRSDGGSSFFKASSGSQRSADSRGGVGASATSVSSWDEEDLQNMGTRWLADRAYNQQFDERK 4048
MTTTEIAFCAMRMYSHFRRTEGNYKRLTVMQNAENVPPVYE+IWQCD SE NP+G SRFFSST GTDAEQQKSLLACLLALSWDGS SSR TLQRALTPT+PSKVP+PEDIFWDEFKD+TDALSGDDEMVVVAR+VLL+A+SANKPGQD SS GG+E E IEHGD+MQALSGAHLREIGIAIKEARPGWQEAHVQ WV LLTPEALDAFLVEKLE RRALVELDLEPSGLVI+HDD G VERVEPAV +K + SW+ SRGHQ+ILPKSS R RK R HRR RS ES GS G +KPSPVVITTV RK XXXXXXXXXXXXXXXXXXXXXXXX +VPPKLTID +FAVRVP +G+S+RSELSRG+SPAGSQ SSVVTRVYAPSS G DQ R A G+D SP NESAMSQVSIAASRF SSP N FG Q R SA S+ LT G +A +AA SGS +VPVGAA +MG SQDL+G+T RG E R P FS RS+AGFSDAASRYD + A +++ G +G G+G G + +P++P SAA SRFDTSSP SA TFTSRVG+GSPTAA GA G GAG GP TGRS ASSMRSDGGSSFF+AS GSQRS DSRG GA + S SSWDEEDLQNMGTRWLADRAYNQQFD +K
Sbjct: 1 MTTTEIAFCAMRMYSHFRRTEGNYKRLTVMQNAENVPPVYEIIWQCDGTSEGNPEGESRFFSSTSGTDAEQQKSLLACLLALSWDGSTSSRKTLQRALTPTRPSKVPSPEDIFWDEFKDSTDALSGDDEMVVVARMVLLVAESANKPGQDGVSSGASSSGVPPEATAGGGEEREKEGIEHGDIMQALSGAHLREIGIAIKEARPGWQEAHVQ--------------------------------WVNLLTPEALDAFLVEKLEARRALVELDLEPSGLVIRHDDHGVVERVEPAVEEKKTS----SWMPSRGHQQILPKSSSR-SRKG--RGHRRSRSVESGGSTG--SKPSPVVITTVHGRKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------XXDTVPPKLTIDAGDFAVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVGGGDQASVVR----VACVGADTPDVAQALASPTNESAMSQVSIAASRFLSSPVNNPFGPQFRGQSA---------------SSGLT---------------GVSAGTAAGSGSGVVPVGAARKDMGISQDLSGLTPTRTGRGG-EDGARSPGAFSVAGRSEAGFSDAASRYDNSFAASRESGVSLAGRVGLTTGAGAGGPPTRLDGLAIQQPSSPNSAAASRFDTSSPASATTFTSRVGVGSPTAAPVGAGGRARVGAG-GPLTGRSAASSMRSDGGSSFFRASGGSQRSGDSRGVGGAGSASASSWDEEDLQNMGTRWLADRAYNQQFDAQK 731
BLAST of mRNA_C-linearis_contig83.16063.1 vs. uniprot
Match: A0A6H5KUU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU0_9PHAE) HSP 1 Score: 487 bits (1254), Expect = 6.970e-150 Identity = 389/836 (46.53%), Postives = 452/836 (54.07%), Query Frame = 2
Query: 197 RALQLSSQGDTVVNGILNLFTTEGVAACEASCKGAFAAAFNVTESSIGCLCPDQEDGTARFRGRWRRRNLGEEED------SQDLGRDSTRSLRG-----LAELDTPAAGAFAARIPGGLDGGTAALEVFTASGPSAVASSFGLEESELAITTLTVTPPTSDDATETLTVITDFFDASDIPLLAPTAGS-GTDFAGGNRGVALFLAMLVLVLMT-CCCFFCVVLGLLWKI---GSGSVDKDVNLTG-----NSF--GTHPTIDGNPRR--PNSQSNACSTDGPALGVVAEESDDSSADSGRGKIVGGAGVTYEGDEAAGG--------SSSRAPVSSGPSLSNPNTDERDLKREV-SPGVGGTAAYMGGVVGAVGADGGQ--------GADDETKFPRNVSMEESGGTNPLYKSVAPLTASGSSSQAEQTATPGRSRLSTFLGNATPSRLRRLAGRMSTKSPGPSDCSQRSSSRNSRSGSSTRSRK-----HRRQGTFPGAYSQRNSSELDHQRPPADPVYTFMIKTIAAKGFKFMTTTEIAFCAMRMYSHFRRTEGNYKRLTVMQNAENVPPVYEMIWQCDSVSEKNPKGGSRFFSSTDGTDAEQQKSLLACLLALSWDGSVSSRTTLQRALTPTKPSKVPAPEDIFWDEFKDNTDALSGDDEMVVVARVVLLIADSANKPGQDEASSKTD-----------GGKEDESGSIEHGDVMQALSGAHLREIGIAIKEARPGWQEAHVQLVSVLLVIAYLEEGAKNTLPGGKRPDPLSSLEWVTLLTPEALDAFLVEKLETRRALVELDLEPSGLVIKHDDDGEVERVEPAVVAEKKA 2530
R+LQ+ + G+TV+NG+LNLFT EGVAACE SCKGAFA AF + E S+GC+CP + R RR +G+++ Q+ G RSLRG LAE ++ AF+AR+ GGL GG AAL + + SG SAVAS+FG++E EL I+TLTVTPP S ++T+TL VITD+FDASDI +++ + + GTD+AGG RGVALFLAM VL+LMT CCC F L LLWK G G+V D NSF G PT DGNPRR P+S A S +GP L + DS A S R G V +EGDEA G S+S A V+ S ++ D +EV SP +AA GGV G D+E PRNVSMEES GTNPLYK+VAP + S S SQ EQT PGRSRLSTFLGNATPSRLRRLA R+ KSP S S+RS HRRQG+FPGAYSQRNSSELDHQRPPADPVYTFMIK D+TDALSGDDEMVVVAR+VLL+A+SANKPGQD SS GG+E E IEHGD+MQALSGAHLREIGIAIKEARPGWQEAHVQ A++ SLEWV LLTPEALDAFLVEKLE RRALVELDLEPSGLVI+HDD G VERVEPAV E+KA
Sbjct: 33 RSLQVLTDGETVLNGVLNLFTEEGVAACEGSCKGAFATAFGIDEVSVGCVCPMTTSASDADR---RRNLMGDDKQPTSDSAEQNNGSSDRRSLRGQRRRWLAETNSSEPVAFSARVAGGLAGGAAALNLLSDSGWSAVASAFGVDEDELEISTLTVTPPASTNSTDTLEVITDYFDASDISIVSSLSTTEGTDWAGGGRGVALFLAMFVLLLMTFCCCGFLAGL-LLWKAQKHGGGAVGADNFFKSRFPERNSFRWGDQPTADGNPRRSEPHSSEGA-SPNGPLLRLA-----DSQASSNRSS--GHESVPHEGDEAVGSGVDHRRATSTSSAAVAPESSSTSRGVSGGDRGKEVESP----SAAGTGGVTXXXXXXXXXXXXXXXXGGRDEEGAIPRNVSMEESVGTNPLYKTVAPYSRSTSESQPEQT--PGRSRLSTFLGNATPSRLRRLAARVG-KSPALSASSRRSKPSXXXXXXXXXXXXXXXXXHRRQGSFPGAYSQRNSSELDHQRPPADPVYTFMIK-------------------------------------------------------------------------------------------------------------------------------DSTDALSGDDEMVVVARMVLLVAESANKPGQDGVSSGASSSGVPPEATAGGGEEREKEGIEHGDIMQALSGAHLREIGIAIKEARPGWQEAHVQ--------AFV------------------SLEWVNLLTPEALDAFLVEKLEARRALVELDLEPSGLVIRHDDHGVVERVEPAV--EEKA 694
BLAST of mRNA_C-linearis_contig83.16063.1 vs. uniprot
Match: D7G5H1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H1_ECTSI) HSP 1 Score: 339 bits (870), Expect = 1.000e-98 Identity = 266/528 (50.38%), Postives = 323/528 (61.17%), Query Frame = 2
Query: 197 RALQLSSQGDTVVNGILNLFTTEGVAACEASCKGAFAAAFNVTESSIGCLCPDQEDGTARFRGRWRRRNLGE-------EEDSQDLGRDSTRSLRG-----LAELDTPAAGAFAARIPGGLDGGTAALEVFTASGPSAVASSFGLEESELAITTLTVTPPTSDDATETLTVITDFFDASDIPLLAPTAGS-GTDFAGGNRGVALFLAMLVLVLMT-CCCFFCVVLGLLWKI---GSGSVDKDVNLTG-----NSF--GTHPTIDGNPRR--PNSQSNACSTDGPALGVVAEESDDSSADSGRGKIVGGAGVTYEGDEAAGG--------SSSRAPVSSGPSLSNPNTDERDLKREV-SPGVGGTAAYMGGVV--------GAVGADGGQGADDETKFPRNVSMEESGGTNPLYKSVAPLTASGSSSQAEQTATPGRSRLSTFLGNATPSRLRRLAGRMSTKSPGPSDCSQRSSSRNSRSGSSTRSRKHRRQ-----GTFPGAYSQRNSSELDHQRPPADPVYTFMIKT 1636
R+LQ+ + G+TV+NG+LNLFT EGVAACE SCK AFA AF + E S+GC+CP + R RR +G+ + Q+ G RSLR LAE D+ AF+AR+ GGL GG AAL++ + SG SAVAS+FG++E EL I+TLTVTPP S ++TETL VITD+FDASDI +++ + + GTD+AGG RGVALFLAM VL+LMT CCC F L LLWK G G+V + NSF G PT DGNPRR P+S A S +GP LG+V +S DSS + V +EGDEAAGG S+S A V+ S + DL +E+ SP +AA GGV GA A G G D+E PRNVSMEES GTNPLYK+ AP S + SQ+EQT PGRSR STFLGNATPSRLRRLAGR++ KSP S S+R G+FPGAYSQRNSSELDHQRPPADPVYTFMIK+
Sbjct: 33 RSLQVLTDGETVLNGVLNLFTEEGVAACEGSCKDAFATAFGIDEVSVGCVCPISTSASDADR---RRNLMGDNSKQPTSDSAEQNKGSSDRRSLRAQRRRWLAETDSSEPVAFSARVAGGLAGGAAALDLLSESGWSAVASAFGVDEDELEISTLTVTPPASTNSTETLEVITDYFDASDISIVSSLSTTEGTDWAGGGRGVALFLAMFVLLLMTFCCCGFLAGL-LLWKAKKHGGGAVGGEKFFKSHLPERNSFRWGGQPTADGNPRRSEPHSSEGA-SPNGPLLGLV--DSQDSS-----NRSPSRENVPHEGDEAAGGVVDHVRATSASSAAVAPESSSKSRGVSSGDLGKELESP----SAAGRGGVTEQTAAAAAGAPAATAG-GRDEEGAIPRNVSMEESVGTNPLYKTAAPYRRSTNESQSEQT--PGRSRFSTFLGNATPSRLRRLAGRVA-KSPALSASSRRXXXXXXXXXXXXXXXXXXXXXXXXXGSFPGAYSQRNSSELDHQRPPADPVYTFMIKS 540
BLAST of mRNA_C-linearis_contig83.16063.1 vs. uniprot
Match: A0A6H5KVJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ4_9PHAE) HSP 1 Score: 311 bits (797), Expect = 9.610e-90 Identity = 273/528 (51.70%), Postives = 305/528 (57.77%), Query Frame = 2
Query: 2522 KKAPNLGSWIGSRGHQKILPKSSGRPDRKASSRKHRRHRSTESLGSGGGDTKPSPVVITTVLNRKASADGKDTRGVATASAPXXXXXXXXXXXXXXXXXXXXXXXXTERNSLRTIAQQRTPSSSGGPGAAAKTSRDAGVSAESGGGDFSSVPPKLTIDPDEFAVRVPAQGSSIRSELSRGMSPAGSQTSSVVTRVYAPSSAGDQGDFSRGGASWAMEGSDGRQSPGNESAMSQVSIAASRFNSSPT-NAFGAQLRAPSAGSFVPGATGLHKPASSTALTAHAVDDTNSCVGGRGGAAAMSAADSGSAIVPVGAAGTEMGFSQDLTGMTRG----DSESRLRLPSNFSEVERSDAGFSDAASRYDGT-PAFNQQGSRSGGGSGARSNPGGL-------------VLEPATPISAAGSRFDTSSPGSAMTFTSRVGIGSPTAAAAGARGALHGGAGDGPFTGRSVASSMRSDGGSSFFKASSGSQRSADSRGGVGASATSVSSWDEEDLQNMGTRWLADRAYNQQFDERK 4048
K SW+ SRGHQ+ILPKSS R RK R HRR RS ES S G +KPSPVVITTV RK XXXXXXXXXXXXXXXXXXXXXXXX +VPPKLTID ++AVRVP +G+S+RSELSRG+SPAGSQ SSVVTRVYAPSS G GD +R + + SP NESAMSQVSIAASRF SSP N FG Q H ++S+ LT G +A +AA SGS +VPVGAA +MG SQDL+GMT E R P FS RS+AGFSDAASRYD + A + G G G + G + P++P SAA SRFDTSSP SA TFTSRVG+GSPTAA AGA G GAG GP TGRS ASSMRSDGGSSFF+AS GSQRS DSRG G + S SSWD+EDLQNMGTRWLADRAYNQQFD K
Sbjct: 17 KNTQKTSSWMPSRGHQQILPKSSSR-SRKG--RGHRRSRSVESASSTG--SKPSPVVITTVHGRKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------XXDNVPPKLTIDAGDYAVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVGG-GDQAR-----SPNMAQTFASPTNESAMSQVSIAASRFLSSPVDNRFGPQF---------------HGQSASSGLT---------------GVSAGTAAGSGSGVVPVGAARKDMGISQDLSGMTPPRMGLGGEDGARSPGAFSVAGRSEAGFSDAASRYDNSFAASRESGVSLAGRVGLTAGTAGXXXXXPPTCLDALAIQHPSSPNSAAASRFDTSSPASATTFTSRVGLGSPTAAPAGAGGRARVGAG-GPLTGRSAASSMRSDGGSSFFRASGGSQRSGDSRGMGGTGSASASSWDDEDLQNMGTRWLADRAYNQQFDAHK 479 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig83.16063.1 >prot_C-linearis_contig83.16063.1 ID=prot_C-linearis_contig83.16063.1|Name=mRNA_C-linearis_contig83.16063.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1319bp MPRLAQAWFIQALLGASSAADGGSSSRAVLDGSTRALQLSSQGDTVVNGIback to top mRNA from alignment at C-linearis_contig83:559819..576421- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig83.16063.1 ID=mRNA_C-linearis_contig83.16063.1|Name=mRNA_C-linearis_contig83.16063.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=16603bp|location=Sequence derived from alignment at C-linearis_contig83:559819..576421- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig83:559819..576421- >mRNA_C-linearis_contig83.16063.1 ID=mRNA_C-linearis_contig83.16063.1|Name=mRNA_C-linearis_contig83.16063.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7914bp|location=Sequence derived from alignment at C-linearis_contig83:559819..576421- (Chordaria linearis ClinC8C monoicous)back to top |