mRNA_C-linearis_contig83.16044.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16044.1
Unique NamemRNA_C-linearis_contig83.16044.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A6H5L7K6_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 6.830e-113
Identity = 216/425 (50.82%), Postives = 251/425 (59.06%), Query Frame = 2
Query:  479 SPALEVLHRNQDFAVCVAGTLRTVGLAGSGWIWTKLLLYCSSAVCKPPLMHVHRPEFGSKDKEFVMQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGKVLHRALADSSSRKTYVAIVRGSGEAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPDPRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPTLPGAGSTAWTAGTAG-------------ADSQRVEGSSRSGGAGSEKARRV---------NETSREAR--RQSGSGGDSLSG-----------SDDDCMPPSEPDEEALGREGL-RSGITVGPGLPVPYLASPIIASAVPQTGSIVGTDNATGEGGDSDAAEETKVEGSEVYAEPPDDMLALLRGMSWWEEGMI 1645
            SP LEVLH+N+ FAV                            V KPP MH HRPEFGS+D +FVMQKAR+QLG R++LPHRLDR TSGCLL+GFS  A KVLH+ LA   S KTY+AIVRGSG A+VGKGWFTVDRPIKD+KK+LREAST FLFVRGG+ PDPRCC VLAQPS+GRFHQIRRHLNG+SHP+VGDSVHG  RFNRE+ GH  N APAGRL+LHCLRL LPTLP  GS A  + T                 S+R      +  AG E+  R          N T  + R  R SGS  + + G            D    P SE D          R  I+  P +P     S  I+ +V +  S   T      G D +A E+   EG  VYAEPPDDM+  LRGMSWWEEG+ 
Sbjct:  129 SPPLEVLHQNEHFAV----------------------------VSKPPGMHCHRPEFGSRDPDFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSHAAKVLHQTLAQPDSSKTYLAIVRGSGSAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCFVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVAGH-RNSAPAGRLMLHCLRLSLPTLPDVGSQALKSATGRILSPDKDTMTNDYCGSKRKSERGHNARAGQERGERPSRKREDGHGNTTGVDGREARASGSVSEEVQGPVETEKAASNTGDPYPKPRSEFDSARTPPASAPRQEISTEPFVPTLAEISAAISPSVGKKES--STRGCRPRGIDGEAQEDLVEEGFHVYAEPPDDMMEFLRGMSWWEEGLF 522          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A7S2LAN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAN5_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.090e-43
Identity = 96/200 (48.00%), Postives = 122/200 (61.00%), Query Frame = 2
Query:  614 KPPLMHVHRPEF-GSKDKEFVM-QKARNQLGHRIYLPHRLDRGTSGCLLLGFSPE-------AGKVLHRALADSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPDP--RCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELP 1168
            KPP +  H  ++ G K+ E  M Q+ R+ +G R+ L HRLDRG SGCLL   + E         KVL  AL    + KTYVAIVRG G    E + GKGWF +DRPIKD+  +   A T F FV G +  +   R  LVLA+PS+GR+HQIRRHLNG+SHP++GDS HG+SR NRE         P  R+ LH  R++LP
Sbjct:   69 KPPSVKCHNSDWTGPKNNEVAMLQRVRDTIGRRVNLIHRLDRGASGCLLASHAEENCDELRECTKVLSDALQSPLATKTYVAIVRGEGILKDEDFKGKGWFHIDRPIKDENGIENGAKTAFRFVAGVNRANDGVRASLVLARPSTGRWHQIRRHLNGLSHPILGDSTHGNSRTNREWRDR---GLPGERICLHLARIQLP 265          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A7S1FQ02_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ02_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.970e-42
Identity = 103/238 (43.28%), Postives = 134/238 (56.30%), Query Frame = 2
Query:  578 TKLLLYCSSA---VCKPPLMHVHRPEF-------GSKDKEFVMQKARNQLGHRIYLPHRLDRGTSGCLLLGFS------PEAGKV------------------LHRALADSSSRKTYVAIVRGS----GEAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAP-DPRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPTL 1174
            T++L   SS    V KPP +  HR ++       G+ +   ++Q+ R+Q+G R+ L HRLDRG SGCLLL F+       E GK                   L  +LAD  + KTYVA+VRG     GE    +GWF VDRPI+D + V REA T F FV G D     R  +VLA+P +GR+HQIRRHLNG+SHP++GDS HG+SR NRE         P  RL LH  ++ LP+L
Sbjct:   68 TRILSTDSSTYLVVAKPPAVACHRSDYIGRKAPDGTPEPPAMVQRIRDQVGRRVNLIHRLDRGASGCLLLAFAGDSRGEDEDGKDGEGGGEDSAERYRDTTRRLIASLADDRAVKTYVALVRGGPFLHGEDLRRRGWFAVDRPIRDARGVEREALTQFRFVAGTDDDCAARASIVLARPRTGRWHQIRRHLNGLSHPILGDSTHGNSRINREW--RSKRGLPGQRLCLHLAKMSLPSL 303          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A1Z5J6G5_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6G5_FISSO)

HSP 1 Score: 161 bits (407), Expect = 5.060e-41
Identity = 97/199 (48.74%), Postives = 130/199 (65.33%), Query Frame = 2
Query:  608 VCKPPLMHVHRPEF-GSKDKEFV--MQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGKV--LHRALADSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPD--PRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPT 1171
            V KPP +  H  ++ GS+ ++ +  +Q+ R  +G RI L HRLDRG SGCLL+ +  + GK   L +A+A++++ KTY+AIVRG G    E    KGWF VDRPIK+++ VL EAST F FV G    D  PR  LVLA+P +GR+HQIRRHLNG+SHP++GDS HG+S+ N+E         P  R  LH  RL+L T
Sbjct:   70 VDKPPSVVCHHSDWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRGCSGCLLVTYQKD-GKTATLSQAMAENAT-KTYIAIVRGEGILRGEDLKEKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPMTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRAQ-RGMLPE-RTCLHLARLQLST 264          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A1Z5K7F0_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7F0_FISSO)

HSP 1 Score: 159 bits (401), Expect = 3.810e-40
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:  608 VCKPPLMHVHRPEF-GSKDKEFV--MQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGK---VLHRALADSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPD--PRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPT 1171
            V KPP +  H  E+ GS+ ++ +  +Q+ R  +G RI L HRLDR  SGCLL+ +  + G    +  +A+A++++ KTY+A+VRG G    E    KGWF VDRPIK+++ VL EAST F FV G    D  PR  LVLA+P +GR+HQIRRHLNG+SHP++GDS HG+S+ N+E         P  R  LH  RL+L T
Sbjct:   66 VDKPPSVVCHHSEWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRVCSGCLLVTYQKDDGDMTAIFSQAMAENAT-KTYIALVRGEGILHGEDLKQKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPRTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRSQ-RGMLPE-RTCLHLARLQLST 262          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A7S3ZM53_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM53_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.720e-38
Identity = 100/254 (39.37%), Postives = 130/254 (51.18%), Query Frame = 2
Query:  476 PSPALEVLHRNQDFAVCVAGTLRTVGLAGSGWIWTKLLLYCSSAVCKPPLMHVHRPEFGSKDKEF-VMQKARNQLGHRIYLPHRLDRGTSGCLLLGFSP-----EAGKVLHRALADSSSRKTYVAIVRGSG---EAYVGK-------------GWFTVDRPIKDDKKVLREASTHFLFVRGGDAPDP-RCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELP 1168
            P P LE+L+    FA+                            V KP  +  H  E+  KD    ++Q+AR+ LG R+ L HRLDRG SGC++  ++      E    L  ALA  + +KTYVA+VRG G   E  + K             GWF VDRPIKDD+     A+T F FV    + D  R  LV A+P++GR+HQIRRHLNG+SHP++GDS HG+SR NRE         P  RL LH  R+ LP
Sbjct:   38 PPPPLEILYEGDTFAI----------------------------VAKPGGVPSHASEYIGKDYVVPLLQRARDALGRRVNLVHRLDRGASGCVICAYADLDDAAEVTTALGEALA--AGQKTYVALVRGEGFLREDLLEKAGADVPSGDLKREGWFVVDRPIKDDRGRENNATTTFKFVASTGSEDAARASLVAARPATGRWHQIRRHLNGLSHPILGDSSHGNSRTNREW--RKERDLPGARLCLHLCRISLP 259          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A1E7F626_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F626_9STRA)

HSP 1 Score: 150 bits (378), Expect = 6.520e-38
Identity = 87/216 (40.28%), Postives = 124/216 (57.41%), Query Frame = 2
Query:  608 VCKPPLMHVHRPEFG---SKDKEFV--------MQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPE------AGKVLHRALADSSS-----RKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRG---GDAPDPRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELP 1168
            V KP  +  HR ++    ++ KE +        +Q+ R  +G ++ L HRLDRG SGCLL  F+        A  ++   + + SS      KTY+AIVRG G      +  +GWF VDRPIKD+   L+ A+++F F+ G   G+   PR  LVLA+  +GR+HQIR+HLNG+SHP++GDS HG S+ NRE +          R+ LH L+LELP
Sbjct:   24 VSKPSAVICHRSDWTGRRNRKKESIITSEEVPMLQRVREAVGEKVNLVHRLDRGASGCLLFSFAKSDKDGGNATAIMQECMTNDSSSTSDTHKTYIAIVRGEGLLKGRDFRQEGWFEVDRPIKDESGNLKNATSYFRFIAGQDDGNGTRPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGISKTNREWIEK--WDLKRERICLHLLKLELP 237          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: B7FYH0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH0_PHATC)

HSP 1 Score: 150 bits (380), Expect = 2.310e-37
Identity = 89/210 (42.38%), Postives = 122/210 (58.10%), Query Frame = 2
Query:  608 VCKPPLMHVHRPEF-GSKDKEF---VMQKARNQLGHR-IYLPHRLDRGTSGCLLLGFS----------PEAGKVLHRALADSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPD-----PRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLEL 1165
            V KPP +  H  E+ GS+   F   ++Q+ R  +G   + L HRL+ G SGCLLL ++          P     L  ++ +++S KTY+A+VRG G      +  +GWF VDRPIK++K +L  A+T F FV G D        PR  LVLA+P +GR+HQIRRHLNG+SHP++GD+ HG+S  NRE         PA R  LH  RL+L
Sbjct:  101 VAKPPTVVCHHSEWTGSRSDPFQIPMLQRTREAMGGNCVNLVHRLNWGCSGCLLLTYAADTADAEIYIPNTTATLIASMKETASLKTYLALVRGEGLLQGRDFKQEGWFKVDRPIKNEKGILNNATTWFRFVAGQDNDSGRINQPRASLVLARPETGRWHQIRRHLNGLSHPILGDTSHGNSHVNREW--RDLRGMPAQRTCLHLARLQL 308          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A448Z1P7_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P7_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.390e-37
Identity = 93/218 (42.66%), Postives = 126/218 (57.80%), Query Frame = 2
Query:  608 VCKPPLMHVHRPEFGSKDKEF-----------VMQKARNQLGHRIYLPHRLDRGTSGCLLLGF--SPEAG----KVLHRALA-DSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRG-----GDAPD-PRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPTLP 1177
            V KPP +  HR ++    K+            ++Q+AR  +G R+ L HRLDRG SGCLL+ F  S E G     VL  ++   SSS KTY+A+VRG G      +  +GWF V RPIK++   L+ A+++F F+ G     G   D PR  LVLA+  +GR+HQIR+HLNG+SHP++GDS HG+S+ NRE            R  LH L+LELP  P
Sbjct:  109 VSKPPSVLCHRSDWSGSGKKRSAKQRGPPEVPMLQRAREAVGERVNLVHRLDRGASGCLLMSFAGSDENGGNATAVLQESMTRTSSSHKTYLALVRGEGILKGRDFRQEGWFEVSRPIKNEAGTLKNATSYFRFIAGQGNENGALEDVPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGNSKTNREW--RQKWGLEPERTCLHLLKLELPATP 324          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: R1EHE9_EMIHU (PseudoU_synth_2 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EHE9_EMIHU)

HSP 1 Score: 142 bits (359), Expect = 1.500e-35
Identity = 76/175 (43.43%), Postives = 105/175 (60.00%), Query Frame = 2
Query:  608 VCKPPLMHVHRPEFGSKDKEFVMQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGKVLHRALADSSSRKTYVAIVRGSGEAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRG---------GDAPDPR----CCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNR 1093
            V KP  + VHR ++  K    ++Q  R+QLG ++   HRLD GTSGCL+     E    L RA A    RKTY+A+ RG+    +G+G   V+RP++DDK VLR A T  + + G         G+A   R      LV+A+P++GRFHQIR+HL G+SHP++GD+ HG SR NR
Sbjct:   27 VAKPAGLVVHRNDWSRKGDVALLQLLRDQLGTQVNPVHRLDAGTSGCLVFAEDSETTAALQRAFASGRVRKTYIAVARGNAMPTLGEG-LVVERPVRDDKGVLRAARTELMCLGGCDGEEVAGEGEAVTGRLNLGASLVVAEPTTGRFHQIRKHLGGLSHPILGDAKHGDSRVNR 200          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7K6_9PHAE6.830e-11350.82PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S2LAN5_9STRA1.090e-4348.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1FQ02_9STRA2.970e-4243.28Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5J6G5_FISSO5.060e-4148.74PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A1Z5K7F0_FISSO3.810e-4047.00PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S3ZM53_9STRA4.720e-3839.37Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A1E7F626_9STRA6.520e-3840.28Pseudouridine synthase (Fragment) n=1 Tax=Fragilar... [more]
B7FYH0_PHATC2.310e-3742.38Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A448Z1P7_9STRA2.390e-3742.66PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
R1EHE9_EMIHU1.500e-3543.43PseudoU_synth_2 domain-containing protein (Fragmen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:300407..303253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.8
Seed ortholog evalue2.1e-96
Seed eggNOG ortholog2880.D7G7M0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
Ec32 ortholog descriptionRNA pseudouridylate synthase domain-containing protein
Ec32 orthologEc-22_001870.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1817
Cds size1464
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.6088064-UTR-C-linearis_contig83:300406..3006141622930621.6088064-UTR-C-linearis_contig83:300406..300614Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 300407..300614 +
1690881163.877676-UTR-C-linearis_contig83:300406..3006141690881163.877676-UTR-C-linearis_contig83:300406..300614Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 300407..300614 +
1622930621.753154-UTR-C-linearis_contig83:303108..3032531622930621.753154-UTR-C-linearis_contig83:303108..303253Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 303109..303253 +
1690881163.9476137-UTR-C-linearis_contig83:303108..3032531690881163.9476137-UTR-C-linearis_contig83:303108..303253Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 303109..303253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.6282654-CDS-C-linearis_contig83:300614..3009251622930621.6282654-CDS-C-linearis_contig83:300614..300925Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 300615..300925 +
1690881163.8912954-CDS-C-linearis_contig83:300614..3009251690881163.8912954-CDS-C-linearis_contig83:300614..300925Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 300615..300925 +
1622930621.6451259-CDS-C-linearis_contig83:301049..3012131622930621.6451259-CDS-C-linearis_contig83:301049..301213Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 301050..301213 +
1690881163.8993456-CDS-C-linearis_contig83:301049..3012131690881163.8993456-CDS-C-linearis_contig83:301049..301213Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 301050..301213 +
1622930621.663927-CDS-C-linearis_contig83:301506..3016041622930621.663927-CDS-C-linearis_contig83:301506..301604Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 301507..301604 +
1690881163.9071066-CDS-C-linearis_contig83:301506..3016041690881163.9071066-CDS-C-linearis_contig83:301506..301604Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 301507..301604 +
1622930621.7088246-CDS-C-linearis_contig83:301892..3021191622930621.7088246-CDS-C-linearis_contig83:301892..302119Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 301893..302119 +
1690881163.9194047-CDS-C-linearis_contig83:301892..3021191690881163.9194047-CDS-C-linearis_contig83:301892..302119Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 301893..302119 +
1622930621.7266455-CDS-C-linearis_contig83:302444..3031081622930621.7266455-CDS-C-linearis_contig83:302444..303108Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 302445..303108 +
1690881163.934804-CDS-C-linearis_contig83:302444..3031081690881163.934804-CDS-C-linearis_contig83:302444..303108Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 302445..303108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16044.1prot_C-linearis_contig83.16044.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 300615..303108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16044.1

>prot_C-linearis_contig83.16044.1 ID=prot_C-linearis_contig83.16044.1|Name=mRNA_C-linearis_contig83.16044.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=488bp
MLLPTCMMTLCGAFVHPRMTHWLPTEGRHSGFRLEACRADAAGRQRSSDG
GAGGSDMWEKTTCGGGDVAAQADAVEEDADAMDVRPESSPSPALEVLHRN
QDFAVCVAGTLRTVGLAGSGWIWTKLLLYCSSAVCKPPLMHVHRPEFGSK
DKEFVMQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGKVLHRALADS
SSRKTYVAIVRGSGEAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGD
APDPRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGH
PTNPAPAGRLLLHCLRLELPTLPGAGSTAWTAGTAGADSQRVEGSSRSGG
AGSEKARRVNETSREARRQSGSGGDSLSGSDDDCMPPSEPDEEALGREGL
RSGITVGPGLPVPYLASPIIASAVPQTGSIVGTDNATGEGGDSDAAEETK
VEGSEVYAEPPDDMLALLRGMSWWEEGMIQAAERRGR*
back to top

mRNA from alignment at C-linearis_contig83:300407..303253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16044.1 ID=mRNA_C-linearis_contig83.16044.1|Name=mRNA_C-linearis_contig83.16044.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2847bp|location=Sequence derived from alignment at C-linearis_contig83:300407..303253+ (Chordaria linearis ClinC8C monoicous)
TCTAGAGGCAACGTGTATTGTTGTCGGAATGCCGTAGAGATAAAAAAAAA TCTCAGATACGCTGCCAATCGAAAACACATCATTTTTCTGGTTTACATAG ATTTATATGTATTTATATTTCCCCGCTGCTGGATAAGAACTTTCGGGAGT GGCATCTGCACATGCTGCAGAAGAGACAGCCGAGGTTGTCTGCGAGGGCG TGAGGTTGATGTTGCTGCCAACGTGTATGATGACGCTTTGTGGTGCCTTC GTTCACCCGAGGATGACTCACTGGCTTCCAACGGAAGGCAGACACTCTGG GTTCAGATTGGAGGCATGCAGAGCAGATGCGGCAGGACGTCAACGTTCCT CCGACGGGGGGGCAGGCGGCAGTGACATGTGGGAAAAGACGACCTGCGGG GGTGGGGACGTGGCAGCCCAAGCAGACGCTGTGGAGGAGGACGCGGACGC GATGGACGTGAGACCAGAGAGCAGTCCATCGCCCGCTCTAGAGGTTCTCC ACCGAAACCAAGACTTCGCGTAAGTGCGCATGATACGCAAGCGCGGTTGA ACACCCTCGCTGAACGTACATTGTAGACTAGTCGCTGCCGGTTTACAACT GCTTTCGGCTCGCTGCTCGTGTTCTGTTGTTGTACTTGCTAAGCGTTTGT GTCGCCGGTACTTTGCGAACTGTTGGACTGGCCGGTTCTGGGTGGATTTG GACGAAACTACTGCTGTACTGCTCAAGTGCGGTCTGTAAACCGCCACTGA TGCACGTCCACCGCCCGGAGTTCGGCTCGAAGGACAAGGAGTTCGTCATG CAAAAAGGTAAGTACCTTGAAGCCCGGGTGGATCCTGGAAGCCAGACTGT TCTGTACGGTGTTACAGCCTGCCTGGTTCCTGTTTGTAGCAACTTCGGGC GCACCTGACACGTAGAGTAGACTAGACTAGACTTAGCAGTATAGACTAGT CTATACGACGACACGGCGGTGGAACCCAAAGACGAGTTTGGCCCGTCCTG TCTGCCGACCATCGCCGCCCAGCAGCTCACTGGACCCATTCATCTCCTGT GCGTGTTTCTGCGTTTATGTAACCTGTGCTGGCATGACCTCCTCCTGCAG CTCGAAACCAGCTTGGTCACCGAATCTACTTGCCACACCGCCTGGACCGT GGCACATCCGGGTGCCTTCTTTTAGGGTTCAGCCCGGAGGCAGGCAAGGT GCGACACAGCGCGTGCGAGCCGCCAACATTGTCCAGGTTTGGATTGCATA TTCCGACCCTTCGACAGTGCAGGTCGCCTGTAACCAGAGGAGTTGGGTCC ACTCATCATCCGCGCCATTGTCCCACCTCTTGTGACGCTTGCTGCACATG CCGTTGCAGCTCGCCCAAACACCCGCCTTACCATGCTGCCGCTAAATTAG TCTATCTTGAAGCCATCGCCACAAAAGGATTTTCAGAAGTTGAACGCCAC TTCGCGTGCCCGTGATTGCTAAATACTCCGGAGTAGGTGCTTCACCGAGC GCTTGCCGACTCGAGTTCCAGAAAGACGTACGTTGCGATTGTCAGGGGAA GCGGCGAGGCGTACGTCGGGAAGGGGTGGTTCACAGTCGACAGACCCATC AAAGACGACAAGAAAGTTTTGAGGGAAGCGTCAACGCACTTCCTCTTTGT CCGAGGGGGGGACGCCCCTGACCCTCGGTGCTGTCTCGTTCTCGCTCAGC CTTCCTCTGGACGGTGAGGGTGGACCTTAACCTTCTCTTTTGCTTCGTGG CGCAGTTCGGATTGTTGCCTTCAGCAGTAAACATACTACGAGAAACGTAA TTTGTCCCGCCGAAGAAAACAATAGAGAACAAAAGGGCCGGCCTGCGGAA ACTTGCCTCGAAGCTGGGATAGGAGAACCTTTTGCCACGGCCCTCAACAC CACTCGTTTTGAATGGCCACTCGTTCGTGCCGGTACGGCCTCATCGCCGT GGTCTATTTTCTTCTGTACTTCAAGTGTGGACGTTGTCCTAAGGTAATCG TCCCATGTCTCTTTCTTGTCTTGCCAATATACCCGTAGGTTTCACCAGAT CAGGCGACATCTGAACGGGATCAGCCACCCCGTCGTGGGCGACTCCGTGC ACGGCAGCAGCCGCTTCAACCGGGAACTAGTCGGCCACCCTACCAACCCG GCGCCCGCAGGACGATTGTTGCTGCACTGCCTTCGGCTGGAGCTACCGAC TCTGCCGGGCGCGGGGTCAACGGCTTGGACAGCAGGTACAGCAGGAGCGG ACAGCCAACGGGTGGAGGGAAGCAGTCGCAGCGGAGGGGCCGGGTCTGAG AAAGCCCGTCGGGTGAATGAGACCAGCCGTGAAGCGCGTCGGCAAAGCGG AAGCGGCGGCGATAGCCTCTCGGGTTCCGATGATGATTGTATGCCTCCCT CGGAACCGGACGAAGAGGCTTTGGGCAGAGAGGGCCTCAGGTCTGGCATC ACTGTGGGCCCCGGTTTGCCCGTACCGTACCTAGCAAGCCCAATTATTGC GTCTGCTGTCCCTCAGACGGGTTCAATCGTGGGAACGGATAACGCTACCG GGGAAGGTGGTGACAGCGATGCAGCAGAGGAGACAAAAGTAGAGGGGTCA GAGGTCTACGCGGAGCCTCCAGACGATATGCTGGCGTTGTTGCGAGGGAT GTCTTGGTGGGAAGAGGGCATGATCCAGGCGGCAGAGCGTCGTGGGCGAT GAGTATCGTCGCCACCGCGGCGAATGGCGTAAATGACTCTTTTTTTGGCT TCGCTTGGTTGGACTCTTGGTGCCAGTTACCGTTGGATGTTGTGGCGTTT AAACGGTCTGTTTCGTTCATATGAAAGCATATTCGCCTTTCCAAACG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig83:300407..303253+

>mRNA_C-linearis_contig83.16044.1 ID=mRNA_C-linearis_contig83.16044.1|Name=mRNA_C-linearis_contig83.16044.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2928bp|location=Sequence derived from alignment at C-linearis_contig83:300407..303253+ (Chordaria linearis ClinC8C monoicous)
ATGTTGCTGCCAACGTGTATGATGACGCTTTGTGGTGCCTTCGTTCACCC
GAGGATGACTCACTGGCTTCCAACGGAAGGCAGACACTCTGGGTTCAGAT
TGGAGGCATGCAGAGCAGATGCGGCAGGACGTCAACGTTCCTCCGACGGG
GGGGCAGGCGGCAGTGACATGTGGGAAAAGACGACCTGCGGGGGTGGGGA
CGTGGCAGCCCAAGCAGACGCTGTGGAGGAGGACGCGGACGCGATGGACG
TGAGACCAGAGAGCAGTCCATCGCCCGCTCTAGAGGTTCTCCACCGAAAC
CAAGACTTCGCATGTTGCTGCCAACGTGTATGATGACGCTTTGTGGTGCC
TTCGTTCACCCGAGGATGACTCACTGGCTTCCAACGGAAGGCAGACACTC
TGGGTTCAGATTGGAGGCATGCAGAGCAGATGCGGCAGGACGTCAACGTT
CCTCCGACGGGGGGGCAGGCGGCAGTGACATGTGGGAAAAGACGACCTGC
GGGGGTGGGGACGTGGCAGCCCAAGCAGACGCTGTGGAGGAGGACGCGGA
CGCGATGGACGTGAGACCAGAGAGCAGTCCATCGCCCGCTCTAGAGGTTC
TCCACCGAAACCAAGACTTCGCCGTTTGTGTCGCCGGTACTTTGCGAACT
GTTGGACTGGCCGGTTCTGGGTGGATTTGGACGAAACTACTGCTGTACTG
CTCAAGTGCGGTCTGTAAACCGCCACTGATGCACGTCCACCGCCCGGAGT
TCGGCTCGAAGGACAAGGAGTTCGTCATGCAAAAAGCGTTTGTGTCGCCG
GTACTTTGCGAACTGTTGGACTGGCCGGTTCTGGGTGGATTTGGACGAAA
CTACTGCTGTACTGCTCAAGTGCGGTCTGTAAACCGCCACTGATGCACGT
CCACCGCCCGGAGTTCGGCTCGAAGGACAAGGAGTTCGTCATGCAAAAAG
CTCGAAACCAGCTTGGTCACCGAATCTACTTGCCACACCGCCTGGACCGT
GGCACATCCGGGTGCCTTCTTTTAGGGTTCAGCCCGGAGGCAGGCAAGCT
CGAAACCAGCTTGGTCACCGAATCTACTTGCCACACCGCCTGGACCGTGG
CACATCCGGGTGCCTTCTTTTAGGGTTCAGCCCGGAGGCAGGCAAGGTGC
TTCACCGAGCGCTTGCCGACTCGAGTTCCAGAAAGACGTACGTTGCGATT
GTCAGGGGAAGCGGCGAGGCGTACGTCGGGAAGGGGTGGTTCACAGTCGA
CAGACCCATCAAAGACGACAAGAAAGTTTTGAGGGAAGCGTCAACGCACT
TCCTCTTTGTCCGAGGGGGGGACGCCCCTGACCCTCGGTGCTGTCTCGTT
CTCGCTCAGCCTTCCTCTGGACGGTGCTTCACCGAGCGCTTGCCGACTCG
AGTTCCAGAAAGACGTACGTTGCGATTGTCAGGGGAAGCGGCGAGGCGTA
CGTCGGGAAGGGGTGGTTCACAGTCGACAGACCCATCAAAGACGACAAGA
AAGTTTTGAGGGAAGCGTCAACGCACTTCCTCTTTGTCCGAGGGGGGGAC
GCCCCTGACCCTCGGTGCTGTCTCGTTCTCGCTCAGCCTTCCTCTGGACG
GTTTCACCAGATCAGGCGACATCTGAACGGGATCAGCCACCCCGTCGTGG
GCGACTCCGTGCACGGCAGCAGCCGCTTCAACCGGGAACTAGTCGGCCAC
CCTACCAACCCGGCGCCCGCAGGACGATTGTTGCTGCACTGCCTTCGGCT
GGAGCTACCGACTCTGCCGGGCGCGGGGTCAACGGCTTGGACAGCAGGTA
CAGCAGGAGCGGACAGCCAACGGGTGGAGGGAAGCAGTCGCAGCGGAGGG
GCCGGGTCTGAGAAAGCCCGTCGGGTGAATGAGACCAGCCGTGAAGCGCG
TCGGCAAAGCGGAAGCGGCGGCGATAGCCTCTCGGGTTCCGATGATGATT
GTATGCCTCCCTCGGAACCGGACGAAGAGGCTTTGGGCAGAGAGGGCCTC
AGGTCTGGCATCACTGTGGGCCCCGGTTTGCCCGTACCGTACCTAGCAAG
CCCAATTATTGCGTCTGCTGTCCCTCAGACGGGTTCAATCGTGGGAACGG
ATAACGCTACCGGGGAAGGTGGTGACAGCGATGCAGCAGAGGAGACAAAA
GTAGAGGGGTCAGAGGTCTACGCGGAGCCTCCAGACGATATGCTGGCGTT
GTTGCGAGGGATGTCTTGGTGGGAAGAGGGCATGATCCAGGCGGCAGAGC
GTCGTGGGCGATGAGTTTCACCAGATCAGGCGACATCTGAACGGGATCAG
CCACCCCGTCGTGGGCGACTCCGTGCACGGCAGCAGCCGCTTCAACCGGG
AACTAGTCGGCCACCCTACCAACCCGGCGCCCGCAGGACGATTGTTGCTG
CACTGCCTTCGGCTGGAGCTACCGACTCTGCCGGGCGCGGGGTCAACGGC
TTGGACAGCAGGTACAGCAGGAGCGGACAGCCAACGGGTGGAGGGAAGCA
GTCGCAGCGGAGGGGCCGGGTCTGAGAAAGCCCGTCGGGTGAATGAGACC
AGCCGTGAAGCGCGTCGGCAAAGCGGAAGCGGCGGCGATAGCCTCTCGGG
TTCCGATGATGATTGTATGCCTCCCTCGGAACCGGACGAAGAGGCTTTGG
GCAGAGAGGGCCTCAGGTCTGGCATCACTGTGGGCCCCGGTTTGCCCGTA
CCGTACCTAGCAAGCCCAATTATTGCGTCTGCTGTCCCTCAGACGGGTTC
AATCGTGGGAACGGATAACGCTACCGGGGAAGGTGGTGACAGCGATGCAG
CAGAGGAGACAAAAGTAGAGGGGTCAGAGGTCTACGCGGAGCCTCCAGAC
GATATGCTGGCGTTGTTGCGAGGGATGTCTTGGTGGGAAGAGGGCATGAT
CCAGGCGGCAGAGCGTCGTGGGCGATGA
back to top