prot_C-linearis_contig83.16044.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig83.16044.1
Unique Nameprot_C-linearis_contig83.16044.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length488
Homology
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A6H5L7K6_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 1.730e-114
Identity = 216/425 (50.82%), Postives = 251/425 (59.06%), Query Frame = 0
Query:   91 SPALEVLHRNQDFAVCVAGTLRTVGLAGSGWIWTKLLLYCSSAVCKPPLMHVHRPEFGSKDKEFVMQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGKVLHRALADSSSRKTYVAIVRGSGEAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPDPRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPTLPGAGSTAWTAGTAG-------------ADSQRVEGSSRSGGAGSEKARRV---------NETSREAR--RQSGSGGDSLSG-----------SDDDCMPPSEPDEEALGREGL-RSGITVGPGLPVPYLASPIIASAVPQTGSIVGTDNATGEGGDSDAAEETKVEGSEVYAEPPDDMLALLRGMSWWEEGMI 479
            SP LEVLH+N+ FAV                            V KPP MH HRPEFGS+D +FVMQKAR+QLG R++LPHRLDR TSGCLL+GFS  A KVLH+ LA   S KTY+AIVRGSG A+VGKGWFTVDRPIKD+KK+LREAST FLFVRGG+ PDPRCC VLAQPS+GRFHQIRRHLNG+SHP+VGDSVHG  RFNRE+ GH  N APAGRL+LHCLRL LPTLP  GS A  + T                 S+R      +  AG E+  R          N T  + R  R SGS  + + G            D    P SE D          R  I+  P +P     S  I+ +V +  S   T      G D +A E+   EG  VYAEPPDDM+  LRGMSWWEEG+ 
Sbjct:  129 SPPLEVLHQNEHFAV----------------------------VSKPPGMHCHRPEFGSRDPDFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSHAAKVLHQTLAQPDSSKTYLAIVRGSGSAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCFVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVAGH-RNSAPAGRLMLHCLRLSLPTLPDVGSQALKSATGRILSPDKDTMTNDYCGSKRKSERGHNARAGQERGERPSRKREDGHGNTTGVDGREARASGSVSEEVQGPVETEKAASNTGDPYPKPRSEFDSARTPPASAPRQEISTEPFVPTLAEISAAISPSVGKKES--STRGCRPRGIDGEAQEDLVEEGFHVYAEPPDDMMEFLRGMSWWEEGLF 522          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A7S2LAN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAN5_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.510e-44
Identity = 96/200 (48.00%), Postives = 122/200 (61.00%), Query Frame = 0
Query:  136 KPPLMHVHRPEF-GSKDKEFVM-QKARNQLGHRIYLPHRLDRGTSGCLLLGFSPE-------AGKVLHRALADSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPDP--RCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELP 320
            KPP +  H  ++ G K+ E  M Q+ R+ +G R+ L HRLDRG SGCLL   + E         KVL  AL    + KTYVAIVRG G    E + GKGWF +DRPIKD+  +   A T F FV G +  +   R  LVLA+PS+GR+HQIRRHLNG+SHP++GDS HG+SR NRE         P  R+ LH  R++LP
Sbjct:   69 KPPSVKCHNSDWTGPKNNEVAMLQRVRDTIGRRVNLIHRLDRGASGCLLASHAEENCDELRECTKVLSDALQSPLATKTYVAIVRGEGILKDEDFKGKGWFHIDRPIKDENGIENGAKTAFRFVAGVNRANDGVRASLVLARPSTGRWHQIRRHLNGLSHPILGDSTHGNSRTNREWRDR---GLPGERICLHLARIQLP 265          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A7S1FQ02_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ02_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.310e-43
Identity = 103/238 (43.28%), Postives = 134/238 (56.30%), Query Frame = 0
Query:  124 TKLLLYCSSA---VCKPPLMHVHRPEF-------GSKDKEFVMQKARNQLGHRIYLPHRLDRGTSGCLLLGFS------PEAGKV------------------LHRALADSSSRKTYVAIVRGS----GEAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAP-DPRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPTL 322
            T++L   SS    V KPP +  HR ++       G+ +   ++Q+ R+Q+G R+ L HRLDRG SGCLLL F+       E GK                   L  +LAD  + KTYVA+VRG     GE    +GWF VDRPI+D + V REA T F FV G D     R  +VLA+P +GR+HQIRRHLNG+SHP++GDS HG+SR NRE         P  RL LH  ++ LP+L
Sbjct:   68 TRILSTDSSTYLVVAKPPAVACHRSDYIGRKAPDGTPEPPAMVQRIRDQVGRRVNLIHRLDRGASGCLLLAFAGDSRGEDEDGKDGEGGGEDSAERYRDTTRRLIASLADDRAVKTYVALVRGGPFLHGEDLRRRGWFAVDRPIRDARGVEREALTQFRFVAGTDDDCAARASIVLARPRTGRWHQIRRHLNGLSHPILGDSTHGNSRINREW--RSKRGLPGQRLCLHLAKMSLPSL 303          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A1Z5J6G5_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6G5_FISSO)

HSP 1 Score: 161 bits (407), Expect = 7.950e-42
Identity = 97/199 (48.74%), Postives = 130/199 (65.33%), Query Frame = 0
Query:  134 VCKPPLMHVHRPEF-GSKDKEFV--MQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGKV--LHRALADSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPD--PRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPT 321
            V KPP +  H  ++ GS+ ++ +  +Q+ R  +G RI L HRLDRG SGCLL+ +  + GK   L +A+A++++ KTY+AIVRG G    E    KGWF VDRPIK+++ VL EAST F FV G    D  PR  LVLA+P +GR+HQIRRHLNG+SHP++GDS HG+S+ N+E         P  R  LH  RL+L T
Sbjct:   70 VDKPPSVVCHHSDWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRGCSGCLLVTYQKD-GKTATLSQAMAENAT-KTYIAIVRGEGILRGEDLKEKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPMTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRAQ-RGMLPE-RTCLHLARLQLST 264          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A1Z5K7F0_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7F0_FISSO)

HSP 1 Score: 159 bits (401), Expect = 6.250e-41
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 0
Query:  134 VCKPPLMHVHRPEF-GSKDKEFV--MQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGK---VLHRALADSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPD--PRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPT 321
            V KPP +  H  E+ GS+ ++ +  +Q+ R  +G RI L HRLDR  SGCLL+ +  + G    +  +A+A++++ KTY+A+VRG G    E    KGWF VDRPIK+++ VL EAST F FV G    D  PR  LVLA+P +GR+HQIRRHLNG+SHP++GDS HG+S+ N+E         P  R  LH  RL+L T
Sbjct:   66 VDKPPSVVCHHSEWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRVCSGCLLVTYQKDDGDMTAIFSQAMAENAT-KTYIALVRGEGILHGEDLKQKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPRTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRSQ-RGMLPE-RTCLHLARLQLST 262          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A7S3ZM53_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM53_9STRA)

HSP 1 Score: 152 bits (384), Expect = 8.850e-39
Identity = 100/254 (39.37%), Postives = 130/254 (51.18%), Query Frame = 0
Query:   90 PSPALEVLHRNQDFAVCVAGTLRTVGLAGSGWIWTKLLLYCSSAVCKPPLMHVHRPEFGSKDKEF-VMQKARNQLGHRIYLPHRLDRGTSGCLLLGFSP-----EAGKVLHRALADSSSRKTYVAIVRGSG---EAYVGK-------------GWFTVDRPIKDDKKVLREASTHFLFVRGGDAPDP-RCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELP 320
            P P LE+L+    FA+                            V KP  +  H  E+  KD    ++Q+AR+ LG R+ L HRLDRG SGC++  ++      E    L  ALA  + +KTYVA+VRG G   E  + K             GWF VDRPIKDD+     A+T F FV    + D  R  LV A+P++GR+HQIRRHLNG+SHP++GDS HG+SR NRE         P  RL LH  R+ LP
Sbjct:   38 PPPPLEILYEGDTFAI----------------------------VAKPGGVPSHASEYIGKDYVVPLLQRARDALGRRVNLVHRLDRGASGCVICAYADLDDAAEVTTALGEALA--AGQKTYVALVRGEGFLREDLLEKAGADVPSGDLKREGWFVVDRPIKDDRGRENNATTTFKFVASTGSEDAARASLVAARPATGRWHQIRRHLNGLSHPILGDSSHGNSRTNREW--RKERDLPGARLCLHLCRISLP 259          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A1E7F626_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F626_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.290e-38
Identity = 87/216 (40.28%), Postives = 124/216 (57.41%), Query Frame = 0
Query:  134 VCKPPLMHVHRPEFG---SKDKEFV--------MQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPE------AGKVLHRALADSSS-----RKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRG---GDAPDPRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELP 320
            V KP  +  HR ++    ++ KE +        +Q+ R  +G ++ L HRLDRG SGCLL  F+        A  ++   + + SS      KTY+AIVRG G      +  +GWF VDRPIKD+   L+ A+++F F+ G   G+   PR  LVLA+  +GR+HQIR+HLNG+SHP++GDS HG S+ NRE +          R+ LH L+LELP
Sbjct:   24 VSKPSAVICHRSDWTGRRNRKKESIITSEEVPMLQRVREAVGEKVNLVHRLDRGASGCLLFSFAKSDKDGGNATAIMQECMTNDSSSTSDTHKTYIAIVRGEGLLKGRDFRQEGWFEVDRPIKDESGNLKNATSYFRFIAGQDDGNGTRPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGISKTNREWIEK--WDLKRERICLHLLKLELP 237          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: A0A448Z1P7_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P7_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.410e-38
Identity = 93/218 (42.66%), Postives = 126/218 (57.80%), Query Frame = 0
Query:  134 VCKPPLMHVHRPEFGSKDKEF-----------VMQKARNQLGHRIYLPHRLDRGTSGCLLLGF--SPEAG----KVLHRALA-DSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRG-----GDAPD-PRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLELPTLP 323
            V KPP +  HR ++    K+            ++Q+AR  +G R+ L HRLDRG SGCLL+ F  S E G     VL  ++   SSS KTY+A+VRG G      +  +GWF V RPIK++   L+ A+++F F+ G     G   D PR  LVLA+  +GR+HQIR+HLNG+SHP++GDS HG+S+ NRE            R  LH L+LELP  P
Sbjct:  109 VSKPPSVLCHRSDWSGSGKKRSAKQRGPPEVPMLQRAREAVGERVNLVHRLDRGASGCLLMSFAGSDENGGNATAVLQESMTRTSSSHKTYLALVRGEGILKGRDFRQEGWFEVSRPIKNEAGTLKNATSYFRFIAGQGNENGALEDVPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGNSKTNREW--RQKWGLEPERTCLHLLKLELPATP 324          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: B7FYH0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH0_PHATC)

HSP 1 Score: 150 bits (380), Expect = 4.460e-38
Identity = 89/210 (42.38%), Postives = 122/210 (58.10%), Query Frame = 0
Query:  134 VCKPPLMHVHRPEF-GSKDKEF---VMQKARNQLGHR-IYLPHRLDRGTSGCLLLGFS----------PEAGKVLHRALADSSSRKTYVAIVRGSG----EAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGDAPD-----PRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGHPTNPAPAGRLLLHCLRLEL 319
            V KPP +  H  E+ GS+   F   ++Q+ R  +G   + L HRL+ G SGCLLL ++          P     L  ++ +++S KTY+A+VRG G      +  +GWF VDRPIK++K +L  A+T F FV G D        PR  LVLA+P +GR+HQIRRHLNG+SHP++GD+ HG+S  NRE         PA R  LH  RL+L
Sbjct:  101 VAKPPTVVCHHSEWTGSRSDPFQIPMLQRTREAMGGNCVNLVHRLNWGCSGCLLLTYAADTADAEIYIPNTTATLIASMKETASLKTYLALVRGEGLLQGRDFKQEGWFKVDRPIKNEKGILNNATTWFRFVAGQDNDSGRINQPRASLVLARPETGRWHQIRRHLNGLSHPILGDTSHGNSHVNREW--RDLRGMPAQRTCLHLARLQL 308          
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Match: R1EHE9_EMIHU (PseudoU_synth_2 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EHE9_EMIHU)

HSP 1 Score: 142 bits (359), Expect = 3.480e-36
Identity = 76/175 (43.43%), Postives = 105/175 (60.00%), Query Frame = 0
Query:  134 VCKPPLMHVHRPEFGSKDKEFVMQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGKVLHRALADSSSRKTYVAIVRGSGEAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRG---------GDAPDPR----CCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNR 295
            V KP  + VHR ++  K    ++Q  R+QLG ++   HRLD GTSGCL+     E    L RA A    RKTY+A+ RG+    +G+G   V+RP++DDK VLR A T  + + G         G+A   R      LV+A+P++GRFHQIR+HL G+SHP++GD+ HG SR NR
Sbjct:   27 VAKPAGLVVHRNDWSRKGDVALLQLLRDQLGTQVNPVHRLDAGTSGCLVFAEDSETTAALQRAFASGRVRKTYIAVARGNAMPTLGEG-LVVERPVRDDKGVLRAARTELMCLGGCDGEEVAGEGEAVTGRLNLGASLVVAEPTTGRFHQIRKHLGGLSHPILGDAKHGDSRVNR 200          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16044.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7K6_9PHAE1.730e-11450.82PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S2LAN5_9STRA1.510e-4448.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1FQ02_9STRA4.310e-4343.28Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5J6G5_FISSO7.950e-4248.74PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A1Z5K7F0_FISSO6.250e-4147.00PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S3ZM53_9STRA8.850e-3939.37Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A1E7F626_9STRA1.290e-3840.28Pseudouridine synthase (Fragment) n=1 Tax=Fragilar... [more]
A0A448Z1P7_9STRA4.410e-3842.66PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
B7FYH0_PHATC4.460e-3842.38Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
R1EHE9_EMIHU3.480e-3643.43PseudoU_synth_2 domain-containing protein (Fragmen... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 133..276
e-value: 1.9E-19
score: 70.3
NoneNo IPR availableGENE3D3.30.2350.10coord: 131..332
e-value: 3.0E-34
score: 120.4
NoneNo IPR availablePANTHERPTHR21600:SF56TRNA PSEUDOURIDINE SYNTHASE Ccoord: 134..321
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 134..321
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 133..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:300615..303108 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16044.1mRNA_C-linearis_contig83.16044.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig83 300407..303253 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig83.16044.1 ID=prot_C-linearis_contig83.16044.1|Name=mRNA_C-linearis_contig83.16044.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=488bp
MLLPTCMMTLCGAFVHPRMTHWLPTEGRHSGFRLEACRADAAGRQRSSDG
GAGGSDMWEKTTCGGGDVAAQADAVEEDADAMDVRPESSPSPALEVLHRN
QDFAVCVAGTLRTVGLAGSGWIWTKLLLYCSSAVCKPPLMHVHRPEFGSK
DKEFVMQKARNQLGHRIYLPHRLDRGTSGCLLLGFSPEAGKVLHRALADS
SSRKTYVAIVRGSGEAYVGKGWFTVDRPIKDDKKVLREASTHFLFVRGGD
APDPRCCLVLAQPSSGRFHQIRRHLNGISHPVVGDSVHGSSRFNRELVGH
PTNPAPAGRLLLHCLRLELPTLPGAGSTAWTAGTAGADSQRVEGSSRSGG
AGSEKARRVNETSREARRQSGSGGDSLSGSDDDCMPPSEPDEEALGREGL
RSGITVGPGLPVPYLASPIIASAVPQTGSIVGTDNATGEGGDSDAAEETK
VEGSEVYAEPPDDMLALLRGMSWWEEGMIQAAERRGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf