mRNA_C-linearis_contig82.16033.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A4C1T256_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T256_EUMVA) HSP 1 Score: 68.6 bits (166), Expect = 2.340e-10 Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 1
Query: 4 NKAAAKGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGER------WQFDTGASGIFARSSKKMTN--FRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKKSTGQKI 501
+++ +KGP C+ CN+ GH ++C K P S + VA + W D+GAS + N P +K+ TL V+ GD+ L P++DG + +K V Y P L NL+SVSK+IK G K++ + G ++H S QK+
Sbjct: 201 HQSKSKGPR-CFNCNKHGHHGKNCWFLKNK------------PQSKENNKGFVAAFSAMKLNNCINWYVDSGASMHMTMHKDLLENETISPISKIKITDN--KTLHVESCGDVILHIPNEDGGS-SEILVKNVLYVPKLPTNLLSVSKIIKSGCKVEFNKTGCSVHN-SNNQKV 357
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A1Y1N3X2_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3X2_PHOPY) HSP 1 Score: 67.8 bits (164), Expect = 4.330e-10 Identity = 46/167 (27.54%), Postives = 75/167 (44.91%), Query Frame = 1
Query: 4 NKAAAKGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGER-------WQFDTGASGIFARSSKKMTNFRPC-NKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHK 480
N + AK C+ C+R GH+ +DC K + +N G + W D+GA+ NF ++ +++A G H + VKG+G + L S ++ ++ V Y PTL+ NL+SVSK+ K G+KM+ + L +I K
Sbjct: 202 NDSKAKQMRECFHCHRKGHYKKDCYFYK-KDKKKEGQQAKLAVDEGESDSNFCFNTFGSKGTVSEPEWYIDSGATSHMCNDLNSFKNFECTESEKITVANGQH-MAVKGKGSIYLK--SVVNGELRSLKFSNVLYVPTLENNLLSVSKITKVGYKMNFNGLNCSIEK 364
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A6H5LDW7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDW7_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 5.330e-9 Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = 1
Query: 34 CYKCNRPGHFARDCTIK---LCKXXXXXXHDEDKCPSSA----------DMQANMVAGVKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIK 432
C+ C GH + CT C+ HD+ KC S D V + ER+ DTGA+ S+ N+ C++ LS+A G + G GD + S G + LK V + P L+YNL+S++ ++K
Sbjct: 219 CFWCGEKGHQSAACTKPEPLRCEKCLGYGHDKSKCSSEQAVLAVELPVLDXDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKEAFAIVGYGDARVTIGSRVG--TTDLLLKRVTHVPELNYNLVSLTALLK 362
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A1W7R6D6_AEDAL (Putative polyprotein (Fragment) n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6D6_AEDAL) HSP 1 Score: 62.4 bits (150), Expect = 3.000e-8 Identity = 44/165 (26.67%), Postives = 74/165 (44.85%), Query Frame = 1
Query: 25 PLLCYKCNRPGHFARDCTIKLC-KXXXXXXHDEDKCPSSADMQAN------------MVAGVKGER-----WQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLG 465
P++CY C + GH +C L K + K A+ + MV G R W D+GA+ + F +++A G + +RV+G GD ++ +D GE ++++ L+GV Y PTL+ N+IS+SK+ + + D G
Sbjct: 200 PVVCYFCGKAGHKKWNCKDFLMQKSSSENTSGKKKNLPKAEQKVRQVRETDFRSFTFMVRGNVNNRPRSHSWLIDSGATSHMCSDRSVFSRFENSRSSVTVADG-NEIRVEGTGDCLIECVNDSGE-LIKLTLQGVLYVPTLESNMISISKLTSKNVRAEFDKTG 362
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A5E4GKX6_PRUDU (CCHC-type domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GKX6_PRUDU) HSP 1 Score: 55.1 bits (131), Expect = 4.210e-6 Identity = 45/147 (30.61%), Postives = 64/147 (43.54%), Query Frame = 1
Query: 19 KGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGER--WQFDTGASGIFARSSKKMT--NFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKM 447
KG CYKC+R GH+ARDCT K + AN KGE W D+G S + + N + K+ G + + G G L LD ++ G K +R V Y P L NL+SV ++ +HG+ +
Sbjct: 72 KGQSKCYKCDRFGHWARDCTAN--KGGQKANNASQVEVKGNLFFANCAISEKGENGEWYVDSGCSNHMTGKKELLIDINSKVTGKVQMPTG--ELVSIAGMGTLVLD--TNSGSKYIR----EVMYLPGLRENLLSVGQMDEHGYHL 208
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A6J5X3M0_PRUAR (Leucine--tRNA ligase n=3 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5X3M0_PRUAR) HSP 1 Score: 55.8 bits (133), Expect = 5.990e-6 Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = 1
Query: 19 KGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQ-----ANMVAGVKGER--WQFDTGASGIFARSSKKMT--NFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKKSTGQKILI 507
KG CYKC+R GH+ARDCT ++ S +++ AN KGE W D+G S + + N + K+ G + + G G L LD ++ G K +R V Y P L NL+SV ++ +HG+ + +I+ S+ + +++
Sbjct: 298 KGQSKCYKCDRFGHWARDCTANK-------GGQKENNASQVEVRGNLFFANCAISEKGENREWYVDSGCSNHMTGKKELLIDINSKVTGKVQMPTG--ELVSIAGMGTLVLD--TNSGAKYIR----EVMYLPGLRENLLSVGQMDEHGYYLVFGSSMCSIYDSSSLENLVM 454
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A6S7HL42_PARCT (Retrovirus-related pol poly from transposon tnt 1-94 (Fragment) n=5 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HL42_PARCT) HSP 1 Score: 55.5 bits (132), Expect = 6.680e-6 Identity = 39/153 (25.49%), Postives = 66/153 (43.14%), Query Frame = 1
Query: 28 LLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHT-LRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKK 483
+LC+KCN+ GH AR+C + K H K + G + W D+ A+ + N+ +++ G +T ++ G G + L +D+ +EL V Y P L NL+SV + G K+ DD ++K+
Sbjct: 262 ILCFKCNKAGHIARNCPLNYRKGGNKGEHS--KLAEGGGVALISSTGNSND-WYVDSAATKHMTNRKDLIINYTQYQTPVNIYLGDNTCIKALGEGMVKLYTQNDN---TFYLELHKVLYVPMLAKNLLSVPAMASMGAKVSFDDEKCVVYKE 408
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A6S7IMI8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IMI8_PARCT) HSP 1 Score: 55.5 bits (132), Expect = 7.680e-6 Identity = 39/153 (25.49%), Postives = 66/153 (43.14%), Query Frame = 1
Query: 28 LLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHT-LRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKK 483
+LC+KCN+ GH AR+C + K H K + G + W D+ A+ + N+ +++ G +T ++ G G + L +D+ +EL V Y P L NL+SV + G K+ DD ++K+
Sbjct: 262 ILCFKCNKAGHIARNCPLNYRKGGNKGEHS--KLAEGGGVALISSTGNSND-WYVDSAATKHMTNRKDLIINYTQYQTPVNIYLGDNTCIKALGEGMVKLYTQNDN---TFYLELHKVLYVPMLAKNLLSVPAMASMGAKVSFDDEKCVVYKE 408
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A0E0C3T6_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0C3T6_9ORYZ) HSP 1 Score: 55.5 bits (132), Expect = 7.850e-6 Identity = 45/166 (27.11%), Postives = 66/166 (39.76%), Query Frame = 1
Query: 1 DNKAAAKGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAG-----------------VKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKM 447
+ K KGP+ C++C +PGHFAR+C K +DK D + NMV + W DTGA+ + + +T +++L GR DL L KV+ L V + P NLIS S ++K G K+
Sbjct: 242 NGKKNGKGPMSCFECGKPGHFARNCRYKKRNEKV----QKDKSDDQTDAKVNMVIDEAEVARCVSNMSQKFDKCQPANWWVDTGATVHEQQGGRSVTGLESKSRVLG----------SGRVDLKLS-----SRKVLT--LHNVLFVPAAKANLISGSLLMKSGHKL 386
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A7D9ESN8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ESN8_PARCT) HSP 1 Score: 55.5 bits (132), Expect = 7.910e-6 Identity = 39/153 (25.49%), Postives = 66/153 (43.14%), Query Frame = 1
Query: 28 LLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHT-LRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKK 483
+LC+KCN+ GH AR+C + K H K + G + W D+ A+ + N+ +++ G +T ++ G G + L +D+ +EL V Y P L NL+SV + G K+ DD ++K+
Sbjct: 263 ILCFKCNKAGHIARNCPLNYRKGGNKGEHS--KLAEGGGVALISSTGNSND-WYVDSAATKHMTNRKDLIINYTQYQTPVNIYLGDNTCIKALGEGMVKLYTQNDN---TFYLELHKVLYVPMLAKNLLSVPAMASMGAKVSFDDEKCVVYKE 409 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig82.16033.1 >prot_C-linearis_contig82.16033.1 ID=prot_C-linearis_contig82.16033.1|Name=mRNA_C-linearis_contig82.16033.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=169bp DNKAAAKGPLLCYKCNRPGHFARDCTIKLCKRCNGRGHDEDKCPSSADMQback to top mRNA from alignment at C-linearis_contig82:820603..821274+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig82.16033.1 ID=mRNA_C-linearis_contig82.16033.1|Name=mRNA_C-linearis_contig82.16033.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=672bp|location=Sequence derived from alignment at C-linearis_contig82:820603..821274+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig82:820603..821274+ >mRNA_C-linearis_contig82.16033.1 ID=mRNA_C-linearis_contig82.16033.1|Name=mRNA_C-linearis_contig82.16033.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at C-linearis_contig82:820603..821274+ (Chordaria linearis ClinC8C monoicous)back to top |