mRNA_C-linearis_contig82.16033.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16033.1
Unique NamemRNA_C-linearis_contig82.16033.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A4C1T256_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T256_EUMVA)

HSP 1 Score: 68.6 bits (166), Expect = 2.340e-10
Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 1
Query:    4 NKAAAKGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGER------WQFDTGASGIFARSSKKMTN--FRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKKSTGQKI 501
            +++ +KGP  C+ CN+ GH  ++C     K            P S +     VA     +      W  D+GAS         + N    P +K+        TL V+  GD+ L  P++DG     + +K V Y P L  NL+SVSK+IK G K++ +  G ++H  S  QK+
Sbjct:  201 HQSKSKGPR-CFNCNKHGHHGKNCWFLKNK------------PQSKENNKGFVAAFSAMKLNNCINWYVDSGASMHMTMHKDLLENETISPISKIKITDN--KTLHVESCGDVILHIPNEDGGS-SEILVKNVLYVPKLPTNLLSVSKIIKSGCKVEFNKTGCSVHN-SNNQKV 357          
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A1Y1N3X2_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3X2_PHOPY)

HSP 1 Score: 67.8 bits (164), Expect = 4.330e-10
Identity = 46/167 (27.54%), Postives = 75/167 (44.91%), Query Frame = 1
Query:    4 NKAAAKGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGER-------WQFDTGASGIFARSSKKMTNFRPC-NKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHK 480
            N + AK    C+ C+R GH+ +DC     K                +  +N      G +       W  D+GA+           NF    ++ +++A G H + VKG+G + L   S    ++  ++   V Y PTL+ NL+SVSK+ K G+KM+ + L  +I K
Sbjct:  202 NDSKAKQMRECFHCHRKGHYKKDCYFYK-KDKKKEGQQAKLAVDEGESDSNFCFNTFGSKGTVSEPEWYIDSGATSHMCNDLNSFKNFECTESEKITVANGQH-MAVKGKGSIYLK--SVVNGELRSLKFSNVLYVPTLENNLLSVSKITKVGYKMNFNGLNCSIEK 364          
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A6H5LDW7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDW7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.330e-9
Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = 1
Query:   34 CYKCNRPGHFARDCTIK---LCKXXXXXXHDEDKCPSSA----------DMQANMVAGVKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIK 432
            C+ C   GH +  CT      C+      HD+ KC S            D     V   + ER+  DTGA+     S+    N+  C++ LS+A G     + G GD  +   S  G     + LK V + P L+YNL+S++ ++K
Sbjct:  219 CFWCGEKGHQSAACTKPEPLRCEKCLGYGHDKSKCSSEQAVLAVELPVLDXDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKEAFAIVGYGDARVTIGSRVG--TTDLLLKRVTHVPELNYNLVSLTALLK 362          
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A1W7R6D6_AEDAL (Putative polyprotein (Fragment) n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6D6_AEDAL)

HSP 1 Score: 62.4 bits (150), Expect = 3.000e-8
Identity = 44/165 (26.67%), Postives = 74/165 (44.85%), Query Frame = 1
Query:   25 PLLCYKCNRPGHFARDCTIKLC-KXXXXXXHDEDKCPSSADMQAN------------MVAGVKGER-----WQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLG 465
            P++CY C + GH   +C   L  K        + K    A+ +              MV G    R     W  D+GA+          + F      +++A G + +RV+G GD  ++  +D GE ++++ L+GV Y PTL+ N+IS+SK+     + + D  G
Sbjct:  200 PVVCYFCGKAGHKKWNCKDFLMQKSSSENTSGKKKNLPKAEQKVRQVRETDFRSFTFMVRGNVNNRPRSHSWLIDSGATSHMCSDRSVFSRFENSRSSVTVADG-NEIRVEGTGDCLIECVNDSGE-LIKLTLQGVLYVPTLESNMISISKLTSKNVRAEFDKTG 362          
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A5E4GKX6_PRUDU (CCHC-type domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GKX6_PRUDU)

HSP 1 Score: 55.1 bits (131), Expect = 4.210e-6
Identity = 45/147 (30.61%), Postives = 64/147 (43.54%), Query Frame = 1
Query:   19 KGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGER--WQFDTGASGIFARSSKKMT--NFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKM 447
            KG   CYKC+R GH+ARDCT    K      +            AN     KGE   W  D+G S       + +   N +   K+    G    + + G G L LD  ++ G K +R     V Y P L  NL+SV ++ +HG+ +
Sbjct:   72 KGQSKCYKCDRFGHWARDCTAN--KGGQKANNASQVEVKGNLFFANCAISEKGENGEWYVDSGCSNHMTGKKELLIDINSKVTGKVQMPTG--ELVSIAGMGTLVLD--TNSGSKYIR----EVMYLPGLRENLLSVGQMDEHGYHL 208          
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A6J5X3M0_PRUAR (Leucine--tRNA ligase n=3 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5X3M0_PRUAR)

HSP 1 Score: 55.8 bits (133), Expect = 5.990e-6
Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = 1
Query:   19 KGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQ-----ANMVAGVKGER--WQFDTGASGIFARSSKKMT--NFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKKSTGQKILI 507
            KG   CYKC+R GH+ARDCT             ++   S  +++     AN     KGE   W  D+G S       + +   N +   K+    G    + + G G L LD  ++ G K +R     V Y P L  NL+SV ++ +HG+ +       +I+  S+ + +++
Sbjct:  298 KGQSKCYKCDRFGHWARDCTANK-------GGQKENNASQVEVRGNLFFANCAISEKGENREWYVDSGCSNHMTGKKELLIDINSKVTGKVQMPTG--ELVSIAGMGTLVLD--TNSGAKYIR----EVMYLPGLRENLLSVGQMDEHGYYLVFGSSMCSIYDSSSLENLVM 454          
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A6S7HL42_PARCT (Retrovirus-related pol poly from transposon tnt 1-94 (Fragment) n=5 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HL42_PARCT)

HSP 1 Score: 55.5 bits (132), Expect = 6.680e-6
Identity = 39/153 (25.49%), Postives = 66/153 (43.14%), Query Frame = 1
Query:   28 LLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHT-LRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKK 483
            +LC+KCN+ GH AR+C +   K      H   K      +      G   + W  D+ A+         + N+      +++  G +T ++  G G + L   +D+      +EL  V Y P L  NL+SV  +   G K+  DD    ++K+
Sbjct:  262 ILCFKCNKAGHIARNCPLNYRKGGNKGEHS--KLAEGGGVALISSTGNSND-WYVDSAATKHMTNRKDLIINYTQYQTPVNIYLGDNTCIKALGEGMVKLYTQNDN---TFYLELHKVLYVPMLAKNLLSVPAMASMGAKVSFDDEKCVVYKE 408          
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A6S7IMI8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IMI8_PARCT)

HSP 1 Score: 55.5 bits (132), Expect = 7.680e-6
Identity = 39/153 (25.49%), Postives = 66/153 (43.14%), Query Frame = 1
Query:   28 LLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHT-LRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKK 483
            +LC+KCN+ GH AR+C +   K      H   K      +      G   + W  D+ A+         + N+      +++  G +T ++  G G + L   +D+      +EL  V Y P L  NL+SV  +   G K+  DD    ++K+
Sbjct:  262 ILCFKCNKAGHIARNCPLNYRKGGNKGEHS--KLAEGGGVALISSTGNSND-WYVDSAATKHMTNRKDLIINYTQYQTPVNIYLGDNTCIKALGEGMVKLYTQNDN---TFYLELHKVLYVPMLAKNLLSVPAMASMGAKVSFDDEKCVVYKE 408          
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A0E0C3T6_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0C3T6_9ORYZ)

HSP 1 Score: 55.5 bits (132), Expect = 7.850e-6
Identity = 45/166 (27.11%), Postives = 66/166 (39.76%), Query Frame = 1
Query:    1 DNKAAAKGPLLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAG-----------------VKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHTLRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKM 447
            + K   KGP+ C++C +PGHFAR+C  K           +DK     D + NMV                    +   W  DTGA+    +  + +T     +++L            GR DL L        KV+   L  V + P    NLIS S ++K G K+
Sbjct:  242 NGKKNGKGPMSCFECGKPGHFARNCRYKKRNEKV----QKDKSDDQTDAKVNMVIDEAEVARCVSNMSQKFDKCQPANWWVDTGATVHEQQGGRSVTGLESKSRVLG----------SGRVDLKLS-----SRKVLT--LHNVLFVPAAKANLISGSLLMKSGHKL 386          
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Match: A0A7D9ESN8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ESN8_PARCT)

HSP 1 Score: 55.5 bits (132), Expect = 7.910e-6
Identity = 39/153 (25.49%), Postives = 66/153 (43.14%), Query Frame = 1
Query:   28 LLCYKCNRPGHFARDCTIKLCKXXXXXXHDEDKCPSSADMQANMVAGVKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHT-LRVKGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMDIDDLGLTIHKK 483
            +LC+KCN+ GH AR+C +   K      H   K      +      G   + W  D+ A+         + N+      +++  G +T ++  G G + L   +D+      +EL  V Y P L  NL+SV  +   G K+  DD    ++K+
Sbjct:  263 ILCFKCNKAGHIARNCPLNYRKGGNKGEHS--KLAEGGGVALISSTGNSND-WYVDSAATKHMTNRKDLIINYTQYQTPVNIYLGDNTCIKALGEGMVKLYTQNDN---TFYLELHKVLYVPMLAKNLLSVPAMASMGAKVSFDDEKCVVYKE 409          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A4C1T256_EUMVA2.340e-1029.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y1N3X2_PHOPY4.330e-1027.54Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
A0A6H5LDW7_9PHAE5.330e-928.77CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A1W7R6D6_AEDAL3.000e-826.67Putative polyprotein (Fragment) n=2 Tax=Aedes albo... [more]
A0A5E4GKX6_PRUDU4.210e-630.61CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6J5X3M0_PRUAR5.990e-627.33Leucine--tRNA ligase n=3 Tax=Prunus armeniaca TaxI... [more]
A0A6S7HL42_PARCT6.680e-625.49Retrovirus-related pol poly from transposon tnt 1-... [more]
A0A6S7IMI8_PARCT7.680e-625.49Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0E0C3T6_9ORYZ7.850e-627.11Uncharacterized protein n=1 Tax=Oryza meridionalis... [more]
A0A7D9ESN8_PARCT7.910e-625.49Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:820603..821274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930619.056582-CDS-C-linearis_contig82:820602..8207641622930619.056582-CDS-C-linearis_contig82:820602..820764Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 820603..820764 +
1690881162.6595843-CDS-C-linearis_contig82:820602..8207641690881162.6595843-CDS-C-linearis_contig82:820602..820764Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 820603..820764 +
1622930619.073373-CDS-C-linearis_contig82:820929..8212741622930619.073373-CDS-C-linearis_contig82:820929..821274Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 820930..821274 +
1690881162.671787-CDS-C-linearis_contig82:820929..8212741690881162.671787-CDS-C-linearis_contig82:820929..821274Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 820930..821274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16033.1prot_C-linearis_contig82.16033.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 820603..821274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16033.1

>prot_C-linearis_contig82.16033.1 ID=prot_C-linearis_contig82.16033.1|Name=mRNA_C-linearis_contig82.16033.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=169bp
DNKAAAKGPLLCYKCNRPGHFARDCTIKLCKRCNGRGHDEDKCPSSADMQ
ANMVAGVKGERWQFDTGASGIFARSSKKMTNFRPCNKLLSLAGGGHTLRV
KGRGDLTLDFPSDDGEKVMRMELKGVEYTPTLDYNLISVSKVIKHGFKMD
IDDLGLTIHKKSTGQKILI
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mRNA from alignment at C-linearis_contig82:820603..821274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16033.1 ID=mRNA_C-linearis_contig82.16033.1|Name=mRNA_C-linearis_contig82.16033.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=672bp|location=Sequence derived from alignment at C-linearis_contig82:820603..821274+ (Chordaria linearis ClinC8C monoicous)
GACAACAAGGCAGCGGCAAAAGGGCCGTTGTTGTGCTACAAATGCAATCG CCCAGGCCATTTCGCCCGGGACTGCACCATAAAGTTGTGCAAGAGGTGCA ACGGACGAGGGCACGACGAGGACAAGTGCCCGTCCTCTGCGGACATGCAG GCGAACATGGTCGTGGAACTAGAGGAGCCGCCGGACTCGGACTCCGGATC GGAGACTGCGAGTGTCATCGCGTCAGGGTTCATTGCAACGGAGCTGGACC CAGCGGGGTGTGGGCACCAACAAGGCAAGTGCGATGGTGGTGGTCCAACC GGTGGTGTAGGGGGGTTGGCTTTGCAGGCCGGGGTAAAGGGGGAACGTTG GCAGTTTGATACAGGGGCTTCGGGCATTTTTGCCCGTAGTTCCAAGAAGA TGACCAATTTCCGGCCGTGCAACAAGCTTCTCAGCCTTGCTGGTGGCGGT CATACCCTTCGGGTTAAAGGTCGAGGAGACCTTACTCTTGATTTCCCTTC AGACGATGGCGAGAAAGTCATGCGCATGGAATTGAAGGGAGTAGAGTACA CACCAACCCTAGACTACAACCTGATCTCGGTATCCAAGGTCATTAAACAT GGTTTTAAAATGGATATTGATGACCTCGGACTTACCATCCACAAAAAGTC TACTGGCCAGAAAATCCTGATA
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Coding sequence (CDS) from alignment at C-linearis_contig82:820603..821274+

>mRNA_C-linearis_contig82.16033.1 ID=mRNA_C-linearis_contig82.16033.1|Name=mRNA_C-linearis_contig82.16033.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at C-linearis_contig82:820603..821274+ (Chordaria linearis ClinC8C monoicous)
GACAACAAGGCAGCGGCAAAAGGGCCGTTGTTGTGCTACAAATGCAATCG
CCCAGGCCATTTCGCCCGGGACTGCACCATAAAGTTGTGCAAGAGGTGCA
ACGGACGAGGGCACGACGAGGACAAGTGCCCGTCCTCTGCGGACATGCAG
GCGAACATGGTCGACAACAAGGCAGCGGCAAAAGGGCCGTTGTTGTGCTA
CAAATGCAATCGCCCAGGCCATTTCGCCCGGGACTGCACCATAAAGTTGT
GCAAGAGGTGCAACGGACGAGGGCACGACGAGGACAAGTGCCCGTCCTCT
GCGGACATGCAGGCGAACATGGTCGCCGGGGTAAAGGGGGAACGTTGGCA
GTTTGATACAGGGGCTTCGGGCATTTTTGCCCGTAGTTCCAAGAAGATGA
CCAATTTCCGGCCGTGCAACAAGCTTCTCAGCCTTGCTGGTGGCGGTCAT
ACCCTTCGGGTTAAAGGTCGAGGAGACCTTACTCTTGATTTCCCTTCAGA
CGATGGCGAGAAAGTCATGCGCATGGAATTGAAGGGAGTAGAGTACACAC
CAACCCTAGACTACAACCTGATCTCGGTATCCAAGGTCATTAAACATGGT
TTTAAAATGGATATTGATGACCTCGGACTTACCATCCACAAAAAGTCTAC
TGGCCAGAAAATCCTGATAGCCGGGGTAAAGGGGGAACGTTGGCAGTTTG
ATACAGGGGCTTCGGGCATTTTTGCCCGTAGTTCCAAGAAGATGACCAAT
TTCCGGCCGTGCAACAAGCTTCTCAGCCTTGCTGGTGGCGGTCATACCCT
TCGGGTTAAAGGTCGAGGAGACCTTACTCTTGATTTCCCTTCAGACGATG
GCGAGAAAGTCATGCGCATGGAATTGAAGGGAGTAGAGTACACACCAACC
CTAGACTACAACCTGATCTCGGTATCCAAGGTCATTAAACATGGTTTTAA
AATGGATATTGATGACCTCGGACTTACCATCCACAAAAAGTCTACTGGCC
AGAAAATCCTGATA
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