mRNA_C-linearis_contig8.15519.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: A0A6H5LDF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDF4_9PHAE) HSP 1 Score: 258 bits (660), Expect = 3.370e-79 Identity = 152/365 (41.64%), Postives = 205/365 (56.16%), Query Frame = 3
Query: 30 LVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFPPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFSDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENAAAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGRVSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVGACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAKGKANYPAEYRGEAKSTNEAKGDGG 1124
+ +I GRPG VA RS SVGG G +V+ S + A+ LY+R +FP T E P PGV G G K QF+R + A+ +M EPYG K++ LA L E Q +M P+ R+ P++S FVD + P+ M++D GGG D DY G + SDA DG++ GGAQ+ GSGRRGATR V VG E+ R+ AA +T ++ MALPL+D R+ L+ GL+L N +GIA G +VSLV + ++R +F V N +C GPF + +VG FSG +NLAK DKK AGLE+G+ D STP +KG+A+Y E +G KST E K +GG
Sbjct: 15 VAKNISGRPGEVAFRSTSVGGNGGTVIVIPTSRYEAALDLYSRRHEFPATTDGVEDPPVPGVVRG--------GKKGVPQFMRTDKSTAVKALMQAKEPYGSPAHKFIFLASALEKESPAVQEKMVDRLPEARD-PQFSHLFVDDSNKPSPLWVVDMVHDTGGGEDTDYSGRL-SDAKTRAYHDGRVFGGAQSAGSGRRGATRIVEVGLAEDERVRTEAADTTHVESTMALPLWDVVAIMGRKDTLFKQGLWLFGNAIGIAKVGSKVSLVETTPKKSRS---GVFFTVMINNRDYCGTGPFFLTFLVGCSFSGYKNLAKHDKKAAGLEVGRSGDFSTPASKGRAHYSGEQKGREKSTKELKAEGG 366
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI) HSP 1 Score: 225 bits (574), Expect = 9.880e-65 Identity = 144/371 (38.81%), Postives = 198/371 (53.37%), Query Frame = 3
Query: 108 MVVQRSLFNEAVALYNRLADF--PPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFSDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENA-AAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGR--VSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVG-ACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAK---------------------------GKANYPAEYRGEAKSTNEAKGDG 1121
MVV S + +AV ++ R D+ PPAT E PGV K F RA R DAI + +PYGD K+L L L E Q +MEAA P+ ++ PE++ F +A+ +P + R+++D+G G DVD G V +D L FDG +IGGAQ RGA R V++GS+E+ R+ A +TV M +PLYDAFV + R LY G +LN NVVG+A G+ +SLV++++ TRG +PW+++V GNW++C GPF +A+V CFSG +NL K DK G+E+G+ D STP K G NY A+ RG KSTNE KG+G
Sbjct: 1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPS----------KDAPSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQS-PEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDRSGRVQADDKVLITFDGGVIGGAQ------RGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKTTRGMEVGRSGDFSTPATKAIATLREETVKHAAHQRTIDSGRTPLRGNVNYTAKERGAEKSTNERKGEG 354
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI) HSP 1 Score: 225 bits (574), Expect = 2.200e-64 Identity = 144/371 (38.81%), Postives = 198/371 (53.37%), Query Frame = 3
Query: 108 MVVQRSLFNEAVALYNRLADF--PPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFSDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENA-AAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGR--VSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVG-ACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAK---------------------------GKANYPAEYRGEAKSTNEAKGDG 1121
MVV S + +AV ++ R D+ PPAT E PGV K F RA R DAI + +PYGD K+L L L E Q +MEAA P+ ++ PE++ F +A+ +P + R+++D+G G DVD G V +D L FDG +IGGAQ RGA R V++GS+E+ R+ A +TV M +PLYDAFV + R LY G +LN NVVG+A G+ +SLV++++ TRG +PW+++V GNW++C GPF +A+V CFSG +NL K DK G+E+G+ D STP K G NY A+ RG KSTNE KG+G
Sbjct: 1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPS----------KDAPSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQS-PEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDRSGRVQADDKVLITFDGGVIGGAQ------RGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKTTRGMEVGRSGDFSTPATKAIATLREETVKHAAHQRTIDSGRTPLRGNVNYTAKERGAEKSTNERKGEG 354
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE) HSP 1 Score: 209 bits (532), Expect = 3.260e-58 Identity = 137/352 (38.92%), Postives = 206/352 (58.52%), Query Frame = 3
Query: 21 GRTLVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFPPATTC-FESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFS-DAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENA-AAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGR--VSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVG-ACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAKGK 1058
G + VAD+P R G++A+RSAS+ GKG+ D+VV+R+ ++EAV +Y +D+ A T E+ R GV + P F RA R+DA+ ++ +PYGD K+L L ++ E E Q +MEA + + ++SS F D G LP + ++++D G G VDY+G V S D+ L+ F G IGG+Q G SG G+ R V +GS E+ R++ A +TV + M + LYD V A R G + +NVVG+A+ G + +SLV++R T G + W++ V+A NW++C GP M LV ACF+GK NL + DK+V +E+G+ DLSTP+ KG+
Sbjct: 19 GTSYVADLPRRSGYLAVRSASIKGKGNVDIVVRRTHYDEAVRIYQE-SDYGLAVTDGVETKPRLGV------VPDEESDDP--VFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQLS-QHSSLFFDEMGNALPKMGLKVVHDTGAGAAVDYDGGVQSGDSKVLWTFGGGTIGGSQNGDSGEEGSRRTVAIGSAEDERLKAPDVAATTVTESTMLVTLYDGVVLAARGI-----GPWFCENVVGVALVGPKKKLSLVKTRGGTTSGGEQWVYYVLAATNWEYCWSGPAFMVLVTQQACFTGKINLWQKDKRVNHMEVGRSGDLSTPETKGR 355
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: A0A6H5JAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK8_9PHAE) HSP 1 Score: 201 bits (512), Expect = 4.840e-56 Identity = 134/376 (35.64%), Postives = 179/376 (47.61%), Query Frame = 3
Query: 3 WHATVFGRT--LVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFPPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFSDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENAAAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGRVSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVGACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAKGKANYPAEYRGEAKSTNEAKGDGG 1124
W T F T + +I GRP VA RS SVGGKGD +V+ S + A+ L++R + P T E P PGV G G K QF+R + A+ +M EPYG K++ LA L E Q +M P+ R+ P++S FVD + P+ M++ GGG D DY G + SDA DG + GGAQ+ GSGRRGATR V VGS E+ R+ AA +T +Q MALPL+D + L+ GL+L N +GIA G +VSLV + ++R PW+F+ V N WC G+ G+ANY E +G K T E K GG
Sbjct: 3 WQPTPFSATDFVAKNISGRPDEVAFRSTSVGGKGDTVIVIPTSRYKAALDLFSRRHELPATTDGVEDPPVPGVVRG--------GKKGVPQFMRTDKSTAVKALMQAKEPYGSPAHKFIFLASALEKESPAVQEKMVDRLPEARD-PQFSHLFVDDSNKPSPLWVVDMVHHTGGGEDTDYSGRL-SDAKTRAYHDGCVFGGAQSAGSGRRGATRIVEVGSAEDERVRTEAADTTYVQSTMALPLWDVVAIMAGKDTLFEQGLWLFGNTIGIAKVGSKVSLVETTPKKSRSGDPWIFVTVMINNRNWC-----------------------------GI--------------GRANYTGEQKGREKKTKELKAAGG 325
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE) HSP 1 Score: 201 bits (511), Expect = 7.240e-55 Identity = 148/386 (38.34%), Postives = 202/386 (52.33%), Query Frame = 3
Query: 3 WHATVFGRT--------LVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFP-PATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPE---YSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVF-SDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENAAAGSTVIQYV-MALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIA-IHGGRVSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGP-FPMALVVGACFSGKENLAKWDKKVAG-LEIGKGMDLSTPQAKGKANYPAEYRGEAKSTNEA 1109
W AT+F + VAD+P RPGHVA+RSAS GKGD MV+ + ++ AV LY L + AT ES GV LT R +P F A +DAI I+ +PY D K+L L+ L + E Q ++A E +SS FVD G LP + R+ +D GGG +VDY F SD +L F G IGGAQ G A + V + S+E+ R++ +T + + M L L DA V+A R L+ G +LN NVVG+A + +SLVR+R+ TRG +PW+++V NW+ C GP F + + CFSG +NL + DK+ A +E+G+ D STP AKGK A G A S A
Sbjct: 83 WEATIFSTSRISTSDTSFVADLPRRPGHVAVRSASKKGKGDLVMVITEAHYHHAVELY--LGPYGLAATDGIESDPHEGV-------LTGRKGRP--SFHYASTDDAIRAILETKQPYVDALHKFLALSSFLHWQTTERQANVDAKMEATFTEAELSKHSSLFVDKKGNALPKIGVRVAHDIGGGANVDYSTRGFESDPKSLLTFGGGTIGGAQNG------ARKLVALDSEEDFRLKTPGVAATTVDHTTMFLRLNDAAVFAARSETLFDKGSWLNKNVVGLAWVRRRGLSLVRTREGTTRGGEPWVYLVTVIDNWEHCWSGPGFLLFVTQQGCFSGYKNLKEHDKEGARQMEVGRSGDFSTPAAKGKIGG-ANQVGSAPSNGAA 450
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI) HSP 1 Score: 191 bits (485), Expect = 1.340e-50 Identity = 135/356 (37.92%), Postives = 191/356 (53.65%), Query Frame = 3
Query: 27 TLVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFPPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEY---SSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVF-SDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENA-AAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIA-IHGGRVSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGP-FPMALVVGACFSGKENLAKWDKKVAG-LEIGKGMDLSTPQAKGKANYP 1070
+ VA++P RPGHVA+RS S GKGD MV++++L+ EAV LY A ES GV L R Q+ A EDAI+ I+ +PYGD K+L L+ R + Q +M+A E SS F+D G L + R+ D G GV+VDY F SD +L F+ IGGAQ G A + + + S+E+ R++ A +TV + M + L DA V A R L+ G +LN NVVG+A + G +SLVR+++ TRG PW+++V NW++C GP F + + CF+G +NL + D+K A +E+G+ D STP AKGK N P
Sbjct: 86 SFVAELPRRPGHVAVRSGSSKGKGDLVMVIEKTLYTEAVDLYQGPYGRE-AKDGIESDPHEGV-------LPDRNGAGSVQY--ATEEDAISAILETKQPYGDGLHKFLALSSFFRWQTPAKQRKMDAEMKATFTEGELFQRSSLFIDETGNALSKIGVRVASDTGRGVNVDYGARGFESDPKSLLTFNRGTIGGAQNG------ARKLLAIDSEEDVRLKTPEVAANTVEEKRMFVRLNDAAVLAARSETLFKKGSWLNKNVVGLAWVQGRGLSLVRTKEGTTRGGNPWVWLVTVIDNWEYCWSGPGFVVFMTHNWCFAGYKNLKEHDRKGANQMEVGRSGDFSTPSAKGKVNGP 425 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15519.1 >prot_C-linearis_contig8.15519.1 ID=prot_C-linearis_contig8.15519.1|Name=mRNA_C-linearis_contig8.15519.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=254bp MVVQRSLFNEAVALYNRLADFPPATTCFESPSRPGVPLGTAGALTQRGVKback to top mRNA from alignment at C-linearis_contig8:978865..981814- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15519.1 ID=mRNA_C-linearis_contig8.15519.1|Name=mRNA_C-linearis_contig8.15519.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2950bp|location=Sequence derived from alignment at C-linearis_contig8:978865..981814- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:978865..981814- >mRNA_C-linearis_contig8.15519.1 ID=mRNA_C-linearis_contig8.15519.1|Name=mRNA_C-linearis_contig8.15519.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at C-linearis_contig8:978865..981814- (Chordaria linearis ClinC8C monoicous)back to top |