mRNA_C-linearis_contig8.15519.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15519.1
Unique NamemRNA_C-linearis_contig8.15519.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: A0A6H5LDF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDF4_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 3.370e-79
Identity = 152/365 (41.64%), Postives = 205/365 (56.16%), Query Frame = 3
Query:   30 LVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFPPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFSDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENAAAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGRVSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVGACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAKGKANYPAEYRGEAKSTNEAKGDGG 1124
            +  +I GRPG VA RS SVGG G   +V+  S +  A+ LY+R  +FP  T   E P  PGV  G        G K   QF+R  +  A+  +M   EPYG    K++ LA  L  E    Q +M    P+ R+ P++S  FVD   +  P+    M++D GGG D DY G + SDA      DG++ GGAQ+ GSGRRGATR V VG  E+ R+   AA +T ++  MALPL+D      R+  L+  GL+L  N +GIA  G +VSLV +   ++R     +F  V   N  +C  GPF +  +VG  FSG +NLAK DKK AGLE+G+  D STP +KG+A+Y  E +G  KST E K +GG
Sbjct:   15 VAKNISGRPGEVAFRSTSVGGNGGTVIVIPTSRYEAALDLYSRRHEFPATTDGVEDPPVPGVVRG--------GKKGVPQFMRTDKSTAVKALMQAKEPYGSPAHKFIFLASALEKESPAVQEKMVDRLPEARD-PQFSHLFVDDSNKPSPLWVVDMVHDTGGGEDTDYSGRL-SDAKTRAYHDGRVFGGAQSAGSGRRGATRIVEVGLAEDERVRTEAADTTHVESTMALPLWDVVAIMGRKDTLFKQGLWLFGNAIGIAKVGSKVSLVETTPKKSRS---GVFFTVMINNRDYCGTGPFFLTFLVGCSFSGYKNLAKHDKKAAGLEVGRSGDFSTPASKGRAHYSGEQKGREKSTKELKAEGG 366          
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 9.880e-65
Identity = 144/371 (38.81%), Postives = 198/371 (53.37%), Query Frame = 3
Query:  108 MVVQRSLFNEAVALYNRLADF--PPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFSDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENA-AAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGR--VSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVG-ACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAK---------------------------GKANYPAEYRGEAKSTNEAKGDG 1121
            MVV  S + +AV ++ R  D+  PPAT   E    PGV             K    F RA R DAI   +   +PYGD   K+L L  L   E    Q +MEAA P+ ++ PE++  F +A+   +P +  R+++D+G G DVD  G V +D   L  FDG +IGGAQ      RGA R V++GS+E+ R+     A +TV    M +PLYDAFV + R   LY  G +LN NVVG+A   G+  +SLV++++  TRG +PW+++V   GNW++C  GPF +A+V    CFSG +NL K DK   G+E+G+  D STP  K                           G  NY A+ RG  KSTNE KG+G
Sbjct:    1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPS----------KDAPSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQS-PEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDRSGRVQADDKVLITFDGGVIGGAQ------RGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKTTRGMEVGRSGDFSTPATKAIATLREETVKHAAHQRTIDSGRTPLRGNVNYTAKERGAEKSTNERKGEG 354          
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 2.200e-64
Identity = 144/371 (38.81%), Postives = 198/371 (53.37%), Query Frame = 3
Query:  108 MVVQRSLFNEAVALYNRLADF--PPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFSDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENA-AAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGR--VSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVG-ACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAK---------------------------GKANYPAEYRGEAKSTNEAKGDG 1121
            MVV  S + +AV ++ R  D+  PPAT   E    PGV             K    F RA R DAI   +   +PYGD   K+L L  L   E    Q +MEAA P+ ++ PE++  F +A+   +P +  R+++D+G G DVD  G V +D   L  FDG +IGGAQ      RGA R V++GS+E+ R+     A +TV    M +PLYDAFV + R   LY  G +LN NVVG+A   G+  +SLV++++  TRG +PW+++V   GNW++C  GPF +A+V    CFSG +NL K DK   G+E+G+  D STP  K                           G  NY A+ RG  KSTNE KG+G
Sbjct:    1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPS----------KDAPSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQS-PEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDRSGRVQADDKVLITFDGGVIGGAQ------RGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKTTRGMEVGRSGDFSTPATKAIATLREETVKHAAHQRTIDSGRTPLRGNVNYTAKERGAEKSTNERKGEG 354          
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 3.260e-58
Identity = 137/352 (38.92%), Postives = 206/352 (58.52%), Query Frame = 3
Query:   21 GRTLVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFPPATTC-FESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFS-DAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENA-AAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGR--VSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVG-ACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAKGK 1058
            G + VAD+P R G++A+RSAS+ GKG+ D+VV+R+ ++EAV +Y   +D+  A T   E+  R GV         +    P   F RA R+DA+  ++   +PYGD   K+L L  ++  E  E Q +MEA     + + ++SS F D  G  LP +  ++++D G G  VDY+G V S D+  L+ F G  IGG+Q G SG  G+ R V +GS E+ R++    A +TV +  M + LYD  V A R       G +  +NVVG+A+ G +  +SLV++R   T G + W++ V+A  NW++C  GP  M LV   ACF+GK NL + DK+V  +E+G+  DLSTP+ KG+
Sbjct:   19 GTSYVADLPRRSGYLAVRSASIKGKGNVDIVVRRTHYDEAVRIYQE-SDYGLAVTDGVETKPRLGV------VPDEESDDP--VFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQLS-QHSSLFFDEMGNALPKMGLKVVHDTGAGAAVDYDGGVQSGDSKVLWTFGGGTIGGSQNGDSGEEGSRRTVAIGSAEDERLKAPDVAATTVTESTMLVTLYDGVVLAARGI-----GPWFCENVVGVALVGPKKKLSLVKTRGGTTSGGEQWVYYVLAATNWEYCWSGPAFMVLVTQQACFTGKINLWQKDKRVNHMEVGRSGDLSTPETKGR 355          
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: A0A6H5JAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 4.840e-56
Identity = 134/376 (35.64%), Postives = 179/376 (47.61%), Query Frame = 3
Query:    3 WHATVFGRT--LVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFPPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFSDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENAAAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGRVSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGPFPMALVVGACFSGKENLAKWDKKVAGLEIGKGMDLSTPQAKGKANYPAEYRGEAKSTNEAKGDGG 1124
            W  T F  T  +  +I GRP  VA RS SVGGKGD  +V+  S +  A+ L++R  + P  T   E P  PGV  G        G K   QF+R  +  A+  +M   EPYG    K++ LA  L  E    Q +M    P+ R+ P++S  FVD   +  P+    M++  GGG D DY G + SDA      DG + GGAQ+ GSGRRGATR V VGS E+ R+   AA +T +Q  MALPL+D       +  L+  GL+L  N +GIA  G +VSLV +   ++R   PW+F+ V   N  WC                             G+              G+ANY  E +G  K T E K  GG
Sbjct:    3 WQPTPFSATDFVAKNISGRPDEVAFRSTSVGGKGDTVIVIPTSRYKAALDLFSRRHELPATTDGVEDPPVPGVVRG--------GKKGVPQFMRTDKSTAVKALMQAKEPYGSPAHKFIFLASALEKESPAVQEKMVDRLPEARD-PQFSHLFVDDSNKPSPLWVVDMVHHTGGGEDTDYSGRL-SDAKTRAYHDGCVFGGAQSAGSGRRGATRIVEVGSAEDERVRTEAADTTYVQSTMALPLWDVVAIMAGKDTLFEQGLWLFGNTIGIAKVGSKVSLVETTPKKSRSGDPWIFVTVMINNRNWC-----------------------------GI--------------GRANYTGEQKGREKKTKELKAAGG 325          
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 7.240e-55
Identity = 148/386 (38.34%), Postives = 202/386 (52.33%), Query Frame = 3
Query:    3 WHATVFGRT--------LVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFP-PATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPE---YSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVF-SDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENAAAGSTVIQYV-MALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIA-IHGGRVSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGP-FPMALVVGACFSGKENLAKWDKKVAG-LEIGKGMDLSTPQAKGKANYPAEYRGEAKSTNEA 1109
            W AT+F  +         VAD+P RPGHVA+RSAS  GKGD  MV+  + ++ AV LY  L  +   AT   ES    GV       LT R  +P   F  A  +DAI  I+   +PY D   K+L L+  L  +  E Q  ++A         E   +SS FVD  G  LP +  R+ +D GGG +VDY    F SD  +L  F G  IGGAQ G      A + V + S+E+ R++     +T + +  M L L DA V+A R   L+  G +LN NVVG+A +    +SLVR+R+  TRG +PW+++V    NW+ C  GP F + +    CFSG +NL + DK+ A  +E+G+  D STP AKGK    A   G A S   A
Sbjct:   83 WEATIFSTSRISTSDTSFVADLPRRPGHVAVRSASKKGKGDLVMVITEAHYHHAVELY--LGPYGLAATDGIESDPHEGV-------LTGRKGRP--SFHYASTDDAIRAILETKQPYVDALHKFLALSSFLHWQTTERQANVDAKMEATFTEAELSKHSSLFVDKKGNALPKIGVRVAHDIGGGANVDYSTRGFESDPKSLLTFGGGTIGGAQNG------ARKLVALDSEEDFRLKTPGVAATTVDHTTMFLRLNDAAVFAARSETLFDKGSWLNKNVVGLAWVRRRGLSLVRTREGTTRGGEPWVYLVTVIDNWEHCWSGPGFLLFVTQQGCFSGYKNLKEHDKEGARQMEVGRSGDFSTPAAKGKIGG-ANQVGSAPSNGAA 450          
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.340e-50
Identity = 135/356 (37.92%), Postives = 191/356 (53.65%), Query Frame = 3
Query:   27 TLVADIPGRPGHVALRSASVGGKGDRDMVVQRSLFNEAVALYNRLADFPPATTCFESPSRPGVPLGTAGALTQRGVKPGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEMEAACPDVRNNPEY---SSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVF-SDAMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENA-AAGSTVIQYVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIA-IHGGRVSLVRSRQTRTRG*QPWMFMVVADGNWQWCHDGP-FPMALVVGACFSGKENLAKWDKKVAG-LEIGKGMDLSTPQAKGKANYP 1070
            + VA++P RPGHVA+RS S  GKGD  MV++++L+ EAV LY        A    ES    GV       L  R      Q+  A  EDAI+ I+   +PYGD   K+L L+   R +    Q +M+A         E    SS F+D  G  L  +  R+  D G GV+VDY    F SD  +L  F+   IGGAQ G      A + + + S+E+ R++    A +TV +  M + L DA V A R   L+  G +LN NVVG+A + G  +SLVR+++  TRG  PW+++V    NW++C  GP F + +    CF+G +NL + D+K A  +E+G+  D STP AKGK N P
Sbjct:   86 SFVAELPRRPGHVAVRSGSSKGKGDLVMVIEKTLYTEAVDLYQGPYGRE-AKDGIESDPHEGV-------LPDRNGAGSVQY--ATEEDAISAILETKQPYGDGLHKFLALSSFFRWQTPAKQRKMDAEMKATFTEGELFQRSSLFIDETGNALSKIGVRVASDTGRGVNVDYGARGFESDPKSLLTFNRGTIGGAQNG------ARKLLAIDSEEDVRLKTPEVAANTVEEKRMFVRLNDAAVLAARSETLFKKGSWLNKNVVGLAWVQGRGLSLVRTKEGTTRGGNPWVWLVTVIDNWEYCWSGPGFVVFMTHNWCFAGYKNLKEHDRKGANQMEVGRSGDFSTPSAKGKVNGP 425          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5LDF4_9PHAE3.370e-7941.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J6_ECTSI9.880e-6538.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWV7_ECTSI2.200e-6438.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU43_9PHAE3.260e-5838.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAK8_9PHAE4.840e-5635.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5E5_9PHAE7.240e-5538.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLR6_ECTSI1.340e-5037.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:978865..981814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1296
Cds size762
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930518.8866856-UTR-C-linearis_contig8:978864..9789691622930518.8866856-UTR-C-linearis_contig8:978864..978969Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 978865..978969 -
1690881111.0117612-UTR-C-linearis_contig8:978864..9789691690881111.0117612-UTR-C-linearis_contig8:978864..978969Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 978865..978969 -
1622930518.9035687-UTR-C-linearis_contig8:979352..9794211622930518.9035687-UTR-C-linearis_contig8:979352..979421Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 979353..979421 -
1690881111.0232656-UTR-C-linearis_contig8:979352..9794211690881111.0232656-UTR-C-linearis_contig8:979352..979421Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 979353..979421 -
1622930518.9217985-UTR-C-linearis_contig8:979920..9799891622930518.9217985-UTR-C-linearis_contig8:979920..979989Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 979921..979989 -
1690881111.0334873-UTR-C-linearis_contig8:979920..9799891690881111.0334873-UTR-C-linearis_contig8:979920..979989Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 979921..979989 -
1622930518.9361253-UTR-C-linearis_contig8:980146..9803301622930518.9361253-UTR-C-linearis_contig8:980146..980330Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 980147..980330 -
1690881111.0432622-UTR-C-linearis_contig8:980146..9803301690881111.0432622-UTR-C-linearis_contig8:980146..980330Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 980147..980330 -
1622930518.9960003-UTR-C-linearis_contig8:981707..9818141622930518.9960003-UTR-C-linearis_contig8:981707..981814Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 981708..981814 -
1690881111.0829976-UTR-C-linearis_contig8:981707..9818141690881111.0829976-UTR-C-linearis_contig8:981707..981814Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 981708..981814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930518.95408-CDS-C-linearis_contig8:980330..9804421622930518.95408-CDS-C-linearis_contig8:980330..980442Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 980331..980442 -
1690881111.058177-CDS-C-linearis_contig8:980330..9804421690881111.058177-CDS-C-linearis_contig8:980330..980442Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 980331..980442 -
1622930518.9747193-CDS-C-linearis_contig8:981057..9817071622930518.9747193-CDS-C-linearis_contig8:981057..981707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 981058..981707 -
1690881111.0722864-CDS-C-linearis_contig8:981057..9817071690881111.0722864-CDS-C-linearis_contig8:981057..981707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 981058..981707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15519.1prot_C-linearis_contig8.15519.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 980331..981707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15519.1

>prot_C-linearis_contig8.15519.1 ID=prot_C-linearis_contig8.15519.1|Name=mRNA_C-linearis_contig8.15519.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=254bp
MVVQRSLFNEAVALYNRLADFPPATTCFESPSRPGVPLGTAGALTQRGVK
PGTQFLRARREDAIAGIMGGVEPYGDTCDKYLHLAVLLRLEKRETQLEME
AACPDVRNNPEYSSFFVDADGEELPVVTERMLYDNGGGVDVDYEGSVFSD
AMALFKFDGKLIGGAQTGGSGRRGATRRVLVGSDEESRIENAAAGSTVIQ
YVMALPLYDAFVYAFRRTNLYVDGLYLNDNVVGIAIHGGRVSLVRSRQTR
TRG*
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mRNA from alignment at C-linearis_contig8:978865..981814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15519.1 ID=mRNA_C-linearis_contig8.15519.1|Name=mRNA_C-linearis_contig8.15519.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2950bp|location=Sequence derived from alignment at C-linearis_contig8:978865..981814- (Chordaria linearis ClinC8C monoicous)
AGTGGCACGCCACTGTATTCGGCAGGACGCTCGTCGCCGACATCCCCGGT CGACCCGGTCACGTGGCGCTGCGGAGCGCATCGGTGGGAGGCAAGGGAGA CCGCGACATGGTTGTCCAGAGGTCGCTGTTCAACGAGGCCGTCGCCCTGT ACAACAGGCTAGCCGATTTCCCGCCGGCAACCACCTGCTTCGAGAGTCCT TCTCGCCCGGGCGTGCCTCTTGGCACGGCCGGCGCGCTCACCCAAAGAGG CGTGAAGCCCGGAACCCAGTTTCTGCGTGCTCGTCGCGAGGATGCCATCG CGGGAATCATGGGGGGGGTCGAGCCCTATGGCGACACGTGCGACAAGTAC CTCCACCTCGCGGTGCTGCTGCGTTTGGAGAAGCGAGAAACCCAGCTGGA GATGGAGGCCGCTTGCCCCGACGTTAGAAACAACCCGGAGTACTCCTCCT TCTTCGTAGACGCCGACGGAGAGGAGTTGCCTGTCGTGACGGAACGGATG CTGTACGACAACGGAGGTGGGGTGGACGTGGACTACGAGGGCAGCGTTTT CTCAGACGCCATGGCCTTGTTCAAGTTCGACGGAAAGCTCATCGGAGGGG CACAGACGGGCGGGTCGGGGAGGCGGGGGGCTACGCGTAGGGTTCTCGTT GGTTCAGACGAAGAGTCGAGGATAGAGAACGCCGCGGCAGGCTCCACCGT CATCCAGTACGTCATGGCCCTTCCCCTCTACGACGCCTTCGTCTACGCCT TTCGCAGGTCTGTGTCAGTTTGGTTTTTCCCCGTTGGTTTTTCCCCGCAG GCCTGTGCAGTAGTTTATCAAGTTTCGCATCACAGTCTAATACGGGCTGT GGTCTTGGGCAGGTTTGCCTTGAACACGTGGAATATGTGCGACAACAACA GTGTTTTGAAAACAATGCCAACAAGGTTCGTAGCCGATGTTCAGAATCAC TTTACATGGGTAGTCCAGCAGTGCCATATGCCTAGCAATGCCATATGTCT TCGGCGCACCAAGTGTAGGTTAGCATGTTAGCGTCAAAGCGGAGGAAATA TTATTCTTGTGCGCAGTAGTGCTTGTAAAAGGAATATCTAGGGAGTCTGG TGAACCGACCTCACTCTGTGGGACCTCTCCGGGTCGCCCAGGCTCAGAAC CTATTTTCAAAACATCATCACCTCGCCTCTGCACTAGGGCACTGCTCGTC GTTTCGACTAAGTACCACACACCATATCACGAGATATCACAGCGGCCAGC GCCGGTCAGCGTCAACCTCAACACCTACTCCGCATCCCCACACAAATTTG TTGCACCTCCTTCCTCGTGGCTGAGTTTGCTCCTCCAACACCACGCAAAC CCCTCCGTACGGCACACCTCAGGACCAACCTGTACGTGGATGGCCTCTAC CTGAACGACAACGTCGTGGGTATCGCCATTCACGGAGGAAGGGTGTCTCT CGTTAGGTCACGGCAGACAAGAACCAGAGGGTGACAACCCTGGATGTTCA TGGTCGTCGCAGACGGCAACTGGCAGTGGTGCCACGACGGGCCGTTTCCC ATGGCGCTGGTAGTGGGCGCGTGTTTCTCGGGCAAGGAGAATCTGGCCAA GTGGGACAAGAAAGTCGCTGGTTTGGAGATCGGCAAAGGAATGGATCTTT CGACTCCCCAGGCAAAAGGCAAGCGAGATTATTTTCGGTGTTGTTGTCGT TGTTGTTGTTGTTGTTGTTGTTGTTGTAATTCTCGCATTCAAACCCTCAC GGTCTCCCTTGGTCTCGCATGTAACTGAAGCACTGTTTTCAGCCAAATCC CCGTCACCGTCACCCCTCCACACAGGCAAAGCCAACTACCCTGCCGAATA CCGAGGGGAGGCCAAGTCCACCAATGAGGCCAAGGGCGACGGCGGTGAGG TGGTGTGATGTGTTGCCCGCTACTGCTGTTGCTCTCATTGTCCGTTGGTG TTGTTGTCGCTGTCGCTGCTGCTGCTGTCGCTGTTGCTGTCGTCATTTCT GCCGATGCCGGCCGGGGAGCAGGACGCACGGGAAGTGAGCGGTCGCTGGC TGCCTCCGATGTCGTGGTTGGCGGCGTTCGTCGCTCGCTTCTGCCTCTGT TGTTTATGCTTATATTCGGATGTCCCCTTTGGATAGCATTGCTTTGAGCT GGCGCCAACCTTTGCGAGATCGCCATCGGGCCCAAACGCCCCGGCCCCCC TTTGCCCCAACGATAGAAATCAACAGCGATAGCTCGCGGGGGTTGTCAAG TAGGACCAAGGCCATGCACACGAAAAAAGATTGGACTCTCTGATATCACT CCTCCCCCTCCCCTCTCTCTCCCCTCTTGCCCCTTTGTCACCCTCGACAC CACCTCCCACCCCCGTGCATATTCCGTCACCTTCTCCCTGCAGGCGCGGC AAAGTACACCGCGGAGGAGCGGGGCGCGGAAAAGTCAACGGTCGAGCTGA AGGCCGAAGGCGGTGAGGGCTGTTTTTGTCGTTGTCATTTCACTGTTGCC GCGGCTCTTCCTGTAGGGTGCGATAGGACGGTACAACTGGTTGTCGCCGC TCAGTGGCCTCCCCTGTTGTTACGGATTAGCATTGCTTTGTGTCGACGCC GGTCGTATGCTTCACGTCGCCAACGCAGCCTCTATAGCCCCGGCCCCCCT CCGCGCCGACACTGACTACCTGGCAGAGATTGCTCGCGGGGTTTGTCAAG TAGGACCAAGGTCGTGTACACGAGAGATTGGACTCTCTGATGATATCACT TCCCCCCACCCCCACCCCTCTCTACCCCATTGCCCCCTTCCCTCATTCCG TCACGGTGCTTGAATGCACCCCACGATCATGCTCTGGTTTTGTAGCGAGG ACAGCCACCGTGAACGGGGCGAAGGTCACGGTCCCCGAGGCCGTGTGGCA AGGAAGCCAGGCGCCGACGGCCGACCAGTCAGCGGCGATGCTTCAGCGGC
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Coding sequence (CDS) from alignment at C-linearis_contig8:978865..981814-

>mRNA_C-linearis_contig8.15519.1 ID=mRNA_C-linearis_contig8.15519.1|Name=mRNA_C-linearis_contig8.15519.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at C-linearis_contig8:978865..981814- (Chordaria linearis ClinC8C monoicous)
ATGGTTGTCCAGAGGTCGCTGTTCAACGAGGCCGTCGCCCTGTACAACAG
GCTAGCCGATTTCCCGCCGGCAACCACCTGCTTCGAGAGTCCTTCTCGCC
CGGGCGTGCCTCTTGGCACGGCCGGCGCGCTCACCCAAAGAGGCGTGAAG
CCCGGAACCCAGTTTCTGCGTGCTCGTCGCGAGGATGCCATCGCGGGAAT
CATGGGGGGGGTCGAGCCCTATGGCGACACGTGCGACAAGTACCTCCACC
TCGCGGTGCTGCTGCGTTTGGAGAAGCGAGAAACCCAGCTGGAGATGGAG
GCCGCTTGCCCCGACGTTAGAAACAACCCGGAGTACTCCTCCTTCTTCGT
AGACGCCGACGGAGAGGAGTTGCCTGTCGTGACGGAACGGATGCTGTACG
ACAACGGAGGTGGGGTGGACGTGGACTACGAGGGCAGCGTTTTCTCAGAC
GCCATGGCCTTGTTCAAGTTCGACGGAAAGCTCATCGGAGGGGCACAGAC
GGGCGGGTCGGGGAGGCGGGGGGCTACGCGTAGGGTTCTCGTTGGTTCAG
ACGAAGAGTCGAGGATAGAGAACGCCGCGGCAGGCTCCACCGTCATCCAG
TACGTCATGGCCCTTCCCCTCTACGACGCCTTCGTCTACGCCTTTCGCAG
ATGGTTGTCCAGAGGTCGCTGTTCAACGAGGCCGTCGCCCTGTACAACAG
GCTAGCCGATTTCCCGCCGGCAACCACCTGCTTCGAGAGTCCTTCTCGCC
CGGGCGTGCCTCTTGGCACGGCCGGCGCGCTCACCCAAAGAGGCGTGAAG
CCCGGAACCCAGTTTCTGCGTGCTCGTCGCGAGGATGCCATCGCGGGAAT
CATGGGGGGGGTCGAGCCCTATGGCGACACGTGCGACAAGTACCTCCACC
TCGCGGTGCTGCTGCGTTTGGAGAAGCGAGAAACCCAGCTGGAGATGGAG
GCCGCTTGCCCCGACGTTAGAAACAACCCGGAGTACTCCTCCTTCTTCGT
AGACGCCGACGGAGAGGAGTTGCCTGTCGTGACGGAACGGATGCTGTACG
ACAACGGAGGTGGGGTGGACGTGGACTACGAGGGCAGCGTTTTCTCAGAC
GCCATGGCCTTGTTCAAGTTCGACGGAAAGCTCATCGGAGGGGCACAGAC
GGGCGGGTCGGGGAGGCGGGGGGCTACGCGTAGGGTTCTCGTTGGTTCAG
ACGAAGAGTCGAGGATAGAGAACGCCGCGGCAGGCTCCACCGTCATCCAG
TACGTCATGGCCCTTCCCCTCTACGACGCCTTCGTCTACGCCTTTCGCAG
GACCAACCTGTACGTGGATGGCCTCTACCTGAACGACAACGTCGTGGGTA
TCGCCATTCACGGAGGAAGGGTGTCTCTCGTTAGGTCACGGCAGACAAGA
ACCAGAGGGTGAGACCAACCTGTACGTGGATGGCCTCTACCTGAACGACA
ACGTCGTGGGTATCGCCATTCACGGAGGAAGGGTGTCTCTCGTTAGGTCA
CGGCAGACAAGAACCAGAGGGTGA
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