mRNA_C-linearis_contig75.15063.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig75.15063.1
Unique NamemRNA_C-linearis_contig75.15063.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig75.15063.1 vs. uniprot
Match: A0A6H5JT31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT31_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.170e-40
Identity = 82/164 (50.00%), Postives = 107/164 (65.24%), Query Frame = 2 
Query:  404 GCFS-PMDVDPIAASLLNGAAAVHGGRLGTPMNTKKNGACFMNGLVSAALNMKCTEEWRGDGPALALLAAAVRTALVKFQKFMSPDGYLEEYCCGQLFGVEELERVDELTGNVQLPIDMSVEMARLYYLCAVRNITGPYSTCQQACLPWVAEVLGVKVRVVHPG 892
            GCF+ P D+D +A+  L GAA   GG +G P+  +  GACF   L S ALN +C+      G ALAL   A+R AL+K ++F+S DGYL EY  G LF  +E + V +L G V  P++MS ++ARLYYLCA+R+  GP+   QQA LPW AEVLG+KVRV HP 
Sbjct:   67 GCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCST----GGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRVW-PMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVFHPA 225
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BLAST of mRNA_C-linearis_contig75.15063.1 vs. uniprot
Match: D7G0G8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G8_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.130e-36
Identity = 84/186 (45.16%), Postives = 112/186 (60.22%), Query Frame = 2 
Query:  353 AGLL-----FRTKETKQWHGSFGCFS-PMDVDPIAASLLNGAAAVHGGRLGTPMNTKKNGACFMNGLVSAALNMKCTEEWRGDGPALALLAAAVRTALVKFQKFMSPDGYLEEYCCGQLFGVEELERVDELTGNVQLPIDMSVEMARLYYLCAVRNITGPYSTCQQACLPWVAEVLGVKVRVVHPG 892
            AGLL     F+    +Q  G  GCF+ P D D +A+  L GAA   GG++G P+     GAC    L S AL+ +C+      G ALAL  AA+R AL+K  +F+S DGYL EY    LF ++E + V +L G  +   ++S ++AR+YYLCAVRN  GP+   QQA +PW AEVLG+KVRV HP 
Sbjct:   39 AGLLDPFAGFKINPIRQ--GDTGCFNLPEDTDELASRCLEGAATSDGGQVGIPVANDGLGACVWIALASGALSERCST----GGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGR-EWTENISPDVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHPA 217
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT31_9PHAE8.170e-4050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G8_ECTSI1.130e-3645.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig75contigC-linearis_contig75:4695..6668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size901
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig75.15063.1prot_C-linearis_contig75.15063.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig75 4695..5177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930423.566296-CDS-C-linearis_contig75:4694..51771622930423.566296-CDS-C-linearis_contig75:4694..5177Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 4695..5177 -
1690881062.2196164-CDS-C-linearis_contig75:4694..51771690881062.2196164-CDS-C-linearis_contig75:4694..5177Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 4695..5177 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930423.6059163-UTR-C-linearis_contig75:5177..52011622930423.6059163-UTR-C-linearis_contig75:5177..5201Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 5178..5201 -
1690881062.229343-UTR-C-linearis_contig75:5177..52011690881062.229343-UTR-C-linearis_contig75:5177..5201Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 5178..5201 -
1622930423.625978-UTR-C-linearis_contig75:5971..60981622930423.625978-UTR-C-linearis_contig75:5971..6098Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 5972..6098 -
1690881062.2382054-UTR-C-linearis_contig75:5971..60981690881062.2382054-UTR-C-linearis_contig75:5971..6098Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 5972..6098 -
1622930423.6423404-UTR-C-linearis_contig75:6401..66681622930423.6423404-UTR-C-linearis_contig75:6401..6668Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 6402..6668 -
1690881062.2475605-UTR-C-linearis_contig75:6401..66681690881062.2475605-UTR-C-linearis_contig75:6401..6668Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 6402..6668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig75.15063.1

>prot_C-linearis_contig75.15063.1 ID=prot_C-linearis_contig75.15063.1|Name=mRNA_C-linearis_contig75.15063.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=161bp
MDVDPIAASLLNGAAAVHGGRLGTPMNTKKNGACFMNGLVSAALNMKCTE
EWRGDGPALALLAAAVRTALVKFQKFMSPDGYLEEYCCGQLFGVEELERV
DELTGNVQLPIDMSVEMARLYYLCAVRNITGPYSTCQQACLPWVAEVLGV
KVRVVHPGVLL
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mRNA from alignment at C-linearis_contig75:4695..6668-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig75.15063.1 ID=mRNA_C-linearis_contig75.15063.1|Name=mRNA_C-linearis_contig75.15063.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1974bp|location=Sequence derived from alignment at C-linearis_contig75:4695..6668- (Chordaria linearis ClinC8C monoicous)
CTCCGGCTGTAGTGCAGATCAAAAATTATACCGACGAGATTTCAGCTCTC
TGGGTCTGTCTCTACACTACACCCGAAGGGTAGCCAATTTCAGGCACTCT
TTTGACCAAGACCTCGGCGACGAAGTTTCAGCTTGGGGCCCCGTGAATGG
AAACGCCGACCGATTGCTCGAGCGTGCATGTAGGTGACATGTGCTTATCT
CCCTCTCTGGCTGCACCGAGGACTATCCGACACACCTGACTGCTGCACCA
TACACTGGTCTTCGAATGTGAGCATGGGATTTCCGAGTTGGGCGCGTTTA
GTTAATGAAATCGGGGTGCAACACAATCTAAGCTGCTGCTGTCGCGGTGC
TAAGCTGGATCAATTGGCCTGTGTACCACGCATTGCCAGCGCTTTGAGCG
CGTTACAGCAGAAGTCTTCAACAAGATAGGCAATCTTGGTCAAGCTTTCG
TATGCTGTTGGCTGCATGTACGATTGCAGCGCAAAGCAATGCACAGCACC
AGCGCAAACCAAGACACAGCACGAGCCGAACACGCAGCAATATGGTCCGC
ACCATTTTTGAATTTCACAGACCGCATGTCGATGAGCGGCCATGCCGAGG
AGACGGCGGCCGTGGACGAGTGTAACAAGCTGTTGCTGAAGGAAATCGAG
AACAAGCTGGACTACTTTTTCGCACAAAAGAAACAAAACAATGGCATGTG
GGTGGGTGGCGTGACGGCGGAAGAAATGCAGGACCTGATCACGTTCGGAG
ATGGTCTGTACGACCCGTTTCAAGGGATGACCATCAACCCTATTTCAGAG
GTGAAGACATACATGGTCATGTTTTTATCATATTGTAGAGCACCAATGTG
GGACCTGGAAGGTCATTTAACCGTAAAGAAAAGAAGAAAAGGGGGGCGTT
GTTCGTATAGATATGTTGTTCATCTCACTATCTGAAATAGAAATAGGGGC
TTGGGACGCCGAAAACGAACCTCGGAAATATTCGACATTTATTTTTGCAT
TTTTTCAGGGTTCAGGTCGGGACGGTTTTTTTTTGCCGGTACCGCCTTTG
GCGGTATCCGGGACCACCTAAATATGCCGGGATATGCCGGGATCCCGGAT
CCCGCCTACCAGGGTGGGATTTCACGTCGGGATTTATCCCGACCTGACCC
CTGACGCCCAGGGGACGGCGTTTTTTTTGCCGGTACCGCCTTCGGCGGTA
TCCGGGACCGCCTAAATATGCCGGGATATATGCCGGTATCCCGGATCCCG
CCTACCAGGGTGGGATTTCACGTCGGGATTTATCCCGACCTGAACCCTGC
ATTTTTTAATTCCTTTCTCGATTCGTATGCATAGTAGGTGATGTCGAGTC
TCACTTTTCTCTACACATAGTTTCAAGATATGCTGCAAAGTACAGAAACT
AGCCAATAACCCTAGCCATCAGGCAAAGCTGTCCAAGTGACCCAACGTTC
GTTTCGCTAACTGACAGGGGAGCTTCGGTTGTTTCAGCCCCATGGATGTC
GACCCCATTGCTGCTTCTCTGCTGAACGGGGCGGCAGCAGTACACGGTGG
ACGGTTGGGAACACCTATGAACACCAAGAAGAATGGCGCGTGTTTCATGA
ACGGATTAGTATCGGCTGCACTCAACATGAAGTGTACGGAAGAGTGGCGA
GGAGATGGGCCCGCGCTTGCTCTTCTTGCTGCTGCTGTTCGAACCGCGCT
CGTTAAGTTTCAGAAGTTTATGAGCCCCGACGGATACCTTGAGGAGTATT
GTTGTGGGCAGCTTTTCGGCGTGGAGGAACTCGAACGGGTGGACGAGCTC
ACGGGCAACGTACAGTTGCCAATTGATATGTCGGTCGAAATGGCGCGGCT
GTACTACCTCTGCGCCGTGAGGAACATCACTGGACCGTACAGCACCTGCC
AGCAGGCGTGCTTGCCGTGGGTGGCCGAGGTTCTCGGCGTCAAGGTTCGG
GTCGTTCACCCAGGTGTGTTGTTG
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Coding sequence (CDS) from alignment at C-linearis_contig75:4695..6668-

>mRNA_C-linearis_contig75.15063.1 ID=mRNA_C-linearis_contig75.15063.1|Name=mRNA_C-linearis_contig75.15063.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at C-linearis_contig75:4695..6668- (Chordaria linearis ClinC8C monoicous)
ATGGATGTCGACCCCATTGCTGCTTCTCTGCTGAACGGGGCGGCAGCAGT
ACACGGTGGACGGTTGGGAACACCTATGAACACCAAGAAGAATGGCGCGT
GTTTCATGAACGGATTAGTATCGGCTGCACTCAACATGAAGTGTACGGAA
GAGTGGCGAGGAGATGGGCCCGCGCTTGCTCTTCTTGCTGCTGCTGTTCG
AACCGCGCTCGTTAAGTTTCAGAAGTTTATGAGCCCCGACGGATACCTTG
AGGAGTATTGTTGTGGGCAGCTTTTCGGCGTGGAGGAACTCGAACGGGTG
GACGAGCTCACGGGCAACGTACAGTTGCCAATTGATATGTCGGTCGAAAT
GGCGCGGCTGTACTACCTCTGCGCCGTGAGGAACATCACTGGACCGTACA
GCACCTGCCAGCAGGCGTGCTTGCCGTGGGTGGCCGAGGTTCTCGGCGTC
AAGGTTCGGGTCGTTCACCCAGGTGTGTTGTTGATGGATGTCGACCCCAT
TGCTGCTTCTCTGCTGAACGGGGCGGCAGCAGTACACGGTGGACGGTTGG
GAACACCTATGAACACCAAGAAGAATGGCGCGTGTTTCATGAACGGATTA
GTATCGGCTGCACTCAACATGAAGTGTACGGAAGAGTGGCGAGGAGATGG
GCCCGCGCTTGCTCTTCTTGCTGCTGCTGTTCGAACCGCGCTCGTTAAGT
TTCAGAAGTTTATGAGCCCCGACGGATACCTTGAGGAGTATTGTTGTGGG
CAGCTTTTCGGCGTGGAGGAACTCGAACGGGTGGACGAGCTCACGGGCAA
CGTACAGTTGCCAATTGATATGTCGGTCGAAATGGCGCGGCTGTACTACC
TCTGCGCCGTGAGGAACATCACTGGACCGTACAGCACCTGCCAGCAGGCG
TGCTTGCCGTGGGTGGCCGAGGTTCTCGGCGTCAAGGTTCGGGTCGTTCA
CCCAGGTGTGTTGTTG
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