mRNA_C-linearis_contig7.14607.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: D7G211_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G211_ECTSI) HSP 1 Score: 165 bits (418), Expect = 5.190e-41 Identity = 164/491 (33.40%), Postives = 201/491 (40.94%), Query Frame = 1
Query: 1 QGSCKNGDACRFTHGTSHKREFPPQGGEAAGRVSAPAAEEEGPATAPTTKNKKKPCRFFVKGKAAACTRGESCPFLHYI-------------GDESGSSI-SANGKNKVKDGYKAGTPDTDADRCTVK--SKPKGTPKVKVKVKPSTKAVVDGRRGDNGAPIVT--ATVTAAKRSAPGEAAAXXXXXXXXXXXIKPRLLGSSXXXSLSLSSKARVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRANTKPCAFFLRGRCRYGDCCRFSHDIARESE----------------GEEEERG--------------EDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRNKSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 1329
+GSC+ G +CRFTHGTS RE G AAG P + TA T+ K+PCRFF KGK C RG SC FLH GDE+G S++GK G G D T K ++P +P K P+ D R G + A +++KRS G L S V XXXXXXXXX ++A + C FF RGRCRYGD CRFSHD E+ G +E+RG ED +A +E AALDEAE+IQSR AECG+CLE VR+ VK R FGIL+ CRHVYCL CI +WR+KS +H CPEC + S LV+ SKTLVTDP+RK RL ++S G
Sbjct: 19 KGSCRYGASCRFTHGTSDSRELRADG--AAGETQTP---RQARPTASTSS--KEPCRFFAKGK---CVRGASCRFLHSATGSDDSSPAAAGDGDETGRRPRSSSGKATPNGGCAEGDEDRGRTVTTAKRPARPCPSPGRKPSSAPAAAVAGDSRVRPEGVCVKRGYAGCSSSKRSGGSSG-------------------GDEVARRLQRSWTDIVTKDVPMDAGGGTASPASTAITESGSSSEENDNDAEEPIAPARRKLAANAADKRDRNTARXXXXXXXXXTSAPAPGAAAPLDQRRTQPAGGSDSGESDGKGKQAK-QACVFFARGRCRYGDRCRFSHDAVEETPAAGGGARXXXXXXXXAGRKEKRGVASEPSSHESEGFGEDEVAARE-AALDEAEKIQSRSAECGICLEKVRKLGKVKDRVFGILVSCRHVYCLGCIREWRDKSDNHACPECGLTSSLVIPSKTLVTDPDRKKRLALELRQSPRG 478
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A6H5L7F8_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F8_9PHAE) HSP 1 Score: 152 bits (384), Expect = 2.300e-36 Identity = 84/172 (48.84%), Postives = 101/172 (58.72%), Query Frame = 1
Query: 913 CAFFLRGRCRYGDCCRFSHDIARE-------------------SEGEEEERG--------------EDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRNKSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 1329
C FF RGRCRYGD CRFSHD E S G +E+RG ED +A +E AALDEAERIQSR AECG+CL VR+ VK R FGIL+ C+H+YCL CI +WR+KS +H CPEC + S L + SKT VTD +RK RL ++S G
Sbjct: 307 CVFFARGRCRYGDRCRFSHDAVEETPAAGAGGERGSHGGRGGGSVGRKEKRGVASEPSSHASEGFGEDEVAARE-AALDEAERIQSRSAECGICLGKVRKLGKVKDRVFGILVSCKHIYCLGCIQEWRDKSNNHACPECGLSSSLALPSKTFVTDLDRKKRLALELRQSPRG 477
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: W2R264_PHYPN (RING-type E3 ubiquitin transferase n=38 Tax=Phytophthora TaxID=4783 RepID=W2R264_PHYPN) HSP 1 Score: 109 bits (272), Expect = 6.610e-22 Identity = 59/149 (39.60%), Postives = 84/149 (56.38%), Query Frame = 1
Query: 898 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 1329
A K C FFL+G CRYGD C +SH + E EEE A+ E R+ S+ ECG+C E++ +K G FG+L GC H +CL+C+ +WR+ K +CP CRV + ++ S +VT PERK L+ ++K+LSG
Sbjct: 228 APPKICTFFLQGLCRYGDTCFYSHSLPERVESEEE-----------MLAMGEEIRL-SQDLECGICYEIILKK----GERFGLLSGCNHSFCLTCLRNWRSSEDQPKQTVRQCPVCRVETKFIIPSSRMVTRPERKKVLIDVYRKNLSG 360
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A329S6E1_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S6E1_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.190e-21 Identity = 59/149 (39.60%), Postives = 83/149 (55.70%), Query Frame = 1
Query: 898 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRNKSKS-----HECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 1329
A K C FFL+G CRYGD C +SH + E EEE A+ E R+ S+ ECG+C EV+ +K G FG+L GC H +CL+C+ +WR+ +CP CRV + ++ S +VT PERK L+ ++K+LSG
Sbjct: 229 APPKICTFFLQGLCRYGDTCFYSHSLPERVESEEE-----------MLAMGEEIRL-SQDLECGICYEVILQK----GERFGLLSGCNHSFCLTCLRNWRSSENQPRQTVRQCPVCRVETKFIIPSGRMVTRPERKKILIDVYRKNLSG 361
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A3R7GYF0_9STRA (RING-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF0_9STRA) HSP 1 Score: 105 bits (263), Expect = 9.480e-21 Identity = 59/149 (39.60%), Postives = 80/149 (53.69%), Query Frame = 1
Query: 898 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 1329
A K C FFL+G CRYGD C ++H + E EEE I+ E L S+ ECG+C E V KG FG+L GC H +CL+C+ +WR K +CP CRV + ++ S +VT PERK L+ ++K+LSG
Sbjct: 228 APPKICTFFLQGLCRYGDTCFYAHSLRENVENEEE-----MISMGEEIRL-------SQDLECGICYENV----VAKGERFGLLSGCNHSFCLTCLRNWRGIADQPKQTVRQCPVCRVETNFIIPSGRMVTKPERKKVLIDEYRKNLSG 360
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A6A3LV75_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LV75_9STRA) HSP 1 Score: 103 bits (257), Expect = 6.210e-20 Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 1
Query: 898 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLS 1326
A K C FFL+G CRYG+ C +SH + E EEE A+ E R+ S ECG+C E + KG FG+L GC H +CLSC+ +WR K +CP CRV + V+ S +VT PERK L+ ++K+LS
Sbjct: 221 APPKICTFFLQGLCRYGNSCFYSHSLPERVESEEE-----------MLAMGEEIRL-SADLECGICYENI----LAKGERFGLLSGCSHAFCLSCLRNWRGTAEQPKQTVRQCPVCRVETNFVIPSSRMVTKPERKKVLIDVYRKNLS 352
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A2R5GUW3_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUW3_9STRA) HSP 1 Score: 103 bits (256), Expect = 6.940e-20 Identity = 58/146 (39.73%), Postives = 78/146 (53.42%), Query Frame = 1
Query: 910 PCAFFLRGRCRYGDCCRFSHDIARESEGEEEERG--EDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRNKSKS---------HECPECRVPSPLVVSSKTLVTDPERKARLVSNFQ 1314
PC FF+RG CR+G+ CR++H A + G + + +A+D+ ER SR+ ECG+CLEV+ K FGIL GC H +CLSCI +WR+ S CP CR PS VV +V DP RK L+ +Q
Sbjct: 201 PCKFFMRGECRFGERCRYTHPGADGNGGYAMSPAPHQQSAPMSAESAMDQFERQASRELECGICLEVIASN---KDGRFGILTGCDHAFCLSCIKNWRSTEVSKGDDRKELVRRCPLCREPSYFVVPCDRMVRDPARKNALIEEYQ 343
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: G5AF51_PHYSP (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AF51_PHYSP) HSP 1 Score: 102 bits (255), Expect = 9.310e-20 Identity = 58/148 (39.19%), Postives = 80/148 (54.05%), Query Frame = 1
Query: 898 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLS 1326
A K C FFL+G CRYGD C +SH + + E EEE A+ E R+ S ECG+C E + K G FG+L GC H +CL+C+ +WR K +CP CRV + ++ S +VT PERK L+ ++K+LS
Sbjct: 221 APPKICTFFLQGLCRYGDTCFYSHSLPEKVESEEE-----------MLAMGEEIRL-SADLECGICYENILGK----GERFGLLSGCNHSFCLTCLRNWRGSADQPKQTVRQCPMCRVETNFIIPSSRMVTKPERKKVLIDVYRKNLS 352
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: H3H388_PHYRM (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H388_PHYRM) HSP 1 Score: 102 bits (254), Expect = 1.040e-19 Identity = 56/145 (38.62%), Postives = 80/145 (55.17%), Query Frame = 1
Query: 904 TKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLS 1326
+K C FFL+G CRYGD C ++H + E EEE A+ E R+ S+ ECG+C E + KG FG+L GC H +CL+C+ +WR K +CP CRV + ++ S +VT PERK L+ ++K+LS
Sbjct: 207 SKICTFFLQGLCRYGDTCFYAHSLPERVESEEE-----------MLAMGEEIRL-SQDLECGICYENI----IGKGERFGLLSGCSHSFCLTCLRNWRGADQPKQTVRQCPVCRVETKFIIPSSRMVTKPERKKFLIDVYRKNLS 335
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: M4BAQ4_HYAAE (RING-type E3 ubiquitin transferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAQ4_HYAAE) HSP 1 Score: 102 bits (254), Expect = 1.170e-19 Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 1
Query: 898 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLS 1326
A K C FFL+G CRYG+ C ++H ++ ++ EEE +A E S+ ECG+C E V K+ FG+L GC HV+CL+C+ +WR K +CP CRV + ++ S +VT PERK L+ ++K+LS
Sbjct: 215 APPKICTFFLQGSCRYGNACFYAHSLSECAQSEEE-----MLARDEEICF-------SQDLECGICYECVVDKD----ERFGLLSGCNHVFCLTCLRNWRGNADQPKQTVRQCPVCRVETSFIIPSSRMVTKPERKKVLIDEYRKNLS 346 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14607.1 >prot_C-linearis_contig7.14607.1 ID=prot_C-linearis_contig7.14607.1|Name=mRNA_C-linearis_contig7.14607.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=223bp MAAVASAAARVKALKAAHQAAKKTAAAAAAAASAAAAAASAGRSEPTTNTback to top mRNA from alignment at C-linearis_contig7:3713166..3716552+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14607.1 ID=mRNA_C-linearis_contig7.14607.1|Name=mRNA_C-linearis_contig7.14607.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3387bp|location=Sequence derived from alignment at C-linearis_contig7:3713166..3716552+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:3713166..3716552+ >mRNA_C-linearis_contig7.14607.1 ID=mRNA_C-linearis_contig7.14607.1|Name=mRNA_C-linearis_contig7.14607.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at C-linearis_contig7:3713166..3716552+ (Chordaria linearis ClinC8C monoicous)back to top |