prot_C-linearis_contig7.14607.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14607.1
Unique Nameprot_C-linearis_contig7.14607.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length223
Homology
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: D7G211_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G211_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 3.060e-44
Identity = 88/169 (52.07%), Postives = 105/169 (62.13%), Query Frame = 0
Query:   82 CAFFLRGRCRYGDCCRFSHDIARESE----------------GEEEERG--------------EDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRNKSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 220
            C FF RGRCRYGD CRFSHD   E+                 G +E+RG              ED +A +E AALDEAE+IQSR AECG+CLE VR+   VK R FGIL+ CRHVYCL CI +WR+KS +H CPEC + S LV+ SKTLVTDP+RK RL    ++S  G
Sbjct:  311 CVFFARGRCRYGDRCRFSHDAVEETPAAGGGARXXXXXXXXAGRKEKRGVASEPSSHESEGFGEDEVAARE-AALDEAEKIQSRSAECGICLEKVRKLGKVKDRVFGILVSCRHVYCLGCIREWRDKSDNHACPECGLTSSLVIPSKTLVTDPDRKKRLALELRQSPRG 478          
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A6H5L7F8_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F8_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.530e-40
Identity = 84/172 (48.84%), Postives = 101/172 (58.72%), Query Frame = 0
Query:   82 CAFFLRGRCRYGDCCRFSHDIARE-------------------SEGEEEERG--------------EDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRNKSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 220
            C FF RGRCRYGD CRFSHD   E                   S G +E+RG              ED +A +E AALDEAERIQSR AECG+CL  VR+   VK R FGIL+ C+H+YCL CI +WR+KS +H CPEC + S L + SKT VTD +RK RL    ++S  G
Sbjct:  307 CVFFARGRCRYGDRCRFSHDAVEETPAAGAGGERGSHGGRGGGSVGRKEKRGVASEPSSHASEGFGEDEVAARE-AALDEAERIQSRSAECGICLGKVRKLGKVKDRVFGILVSCKHIYCLGCIQEWRDKSNNHACPECGLSSSLALPSKTFVTDLDRKKRLALELRQSPRG 477          
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: W2R264_PHYPN (RING-type E3 ubiquitin transferase n=38 Tax=Phytophthora TaxID=4783 RepID=W2R264_PHYPN)

HSP 1 Score: 109 bits (273), Expect = 1.710e-24
Identity = 59/149 (39.60%), Postives = 84/149 (56.38%), Query Frame = 0
Query:   77 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 220
            A  K C FFL+G CRYGD C +SH +    E EEE             A+ E  R+ S+  ECG+C E++ +K    G  FG+L GC H +CL+C+ +WR+     K    +CP CRV +  ++ S  +VT PERK  L+  ++K+LSG
Sbjct:  228 APPKICTFFLQGLCRYGDTCFYSHSLPERVESEEE-----------MLAMGEEIRL-SQDLECGICYEIILKK----GERFGLLSGCNHSFCLTCLRNWRSSEDQPKQTVRQCPVCRVETKFIIPSSRMVTRPERKKVLIDVYRKNLSG 360          
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A329S6E1_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S6E1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.300e-24
Identity = 59/149 (39.60%), Postives = 83/149 (55.70%), Query Frame = 0
Query:   77 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRNKSKS-----HECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 220
            A  K C FFL+G CRYGD C +SH +    E EEE             A+ E  R+ S+  ECG+C EV+ +K    G  FG+L GC H +CL+C+ +WR+          +CP CRV +  ++ S  +VT PERK  L+  ++K+LSG
Sbjct:  229 APPKICTFFLQGLCRYGDTCFYSHSLPERVESEEE-----------MLAMGEEIRL-SQDLECGICYEVILQK----GERFGLLSGCNHSFCLTCLRNWRSSENQPRQTVRQCPVCRVETKFIIPSGRMVTRPERKKILIDVYRKNLSG 361          
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A3R7GYF0_9STRA (RING-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF0_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.140e-23
Identity = 59/149 (39.60%), Postives = 80/149 (53.69%), Query Frame = 0
Query:   77 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLSG 220
            A  K C FFL+G CRYGD C ++H +    E EEE      I+  E   L       S+  ECG+C E V      KG  FG+L GC H +CL+C+ +WR      K    +CP CRV +  ++ S  +VT PERK  L+  ++K+LSG
Sbjct:  228 APPKICTFFLQGLCRYGDTCFYAHSLRENVENEEE-----MISMGEEIRL-------SQDLECGICYENV----VAKGERFGLLSGCNHSFCLTCLRNWRGIADQPKQTVRQCPVCRVETNFIIPSGRMVTKPERKKVLIDEYRKNLSG 360          
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A6A3LV75_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LV75_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.300e-22
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 0
Query:   77 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLS 219
            A  K C FFL+G CRYG+ C +SH +    E EEE             A+ E  R+ S   ECG+C E +      KG  FG+L GC H +CLSC+ +WR      K    +CP CRV +  V+ S  +VT PERK  L+  ++K+LS
Sbjct:  221 APPKICTFFLQGLCRYGNSCFYSHSLPERVESEEE-----------MLAMGEEIRL-SADLECGICYENI----LAKGERFGLLSGCSHAFCLSCLRNWRGTAEQPKQTVRQCPVCRVETNFVIPSSRMVTKPERKKVLIDVYRKNLS 352          
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: A0A2R5GUW3_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUW3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.890e-22
Identity = 58/146 (39.73%), Postives = 78/146 (53.42%), Query Frame = 0
Query:   81 PCAFFLRGRCRYGDCCRFSHDIARESEGEEEERG--EDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRNKSKS---------HECPECRVPSPLVVSSKTLVTDPERKARLVSNFQ 215
            PC FF+RG CR+G+ CR++H  A  + G        + +      +A+D+ ER  SR+ ECG+CLEV+      K   FGIL GC H +CLSCI +WR+   S           CP CR PS  VV    +V DP RK  L+  +Q
Sbjct:  201 PCKFFMRGECRFGERCRYTHPGADGNGGYAMSPAPHQQSAPMSAESAMDQFERQASRELECGICLEVIASN---KDGRFGILTGCDHAFCLSCIKNWRSTEVSKGDDRKELVRRCPLCREPSYFVVPCDRMVRDPARKNALIEEYQ 343          
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: G5AF51_PHYSP (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AF51_PHYSP)

HSP 1 Score: 102 bits (255), Expect = 5.360e-22
Identity = 58/148 (39.19%), Postives = 80/148 (54.05%), Query Frame = 0
Query:   77 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLS 219
            A  K C FFL+G CRYGD C +SH +  + E EEE             A+ E  R+ S   ECG+C E +  K    G  FG+L GC H +CL+C+ +WR      K    +CP CRV +  ++ S  +VT PERK  L+  ++K+LS
Sbjct:  221 APPKICTFFLQGLCRYGDTCFYSHSLPEKVESEEE-----------MLAMGEEIRL-SADLECGICYENILGK----GERFGLLSGCNHSFCLTCLRNWRGSADQPKQTVRQCPMCRVETNFIIPSSRMVTKPERKKVLIDVYRKNLS 352          
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: H3H388_PHYRM (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H388_PHYRM)

HSP 1 Score: 102 bits (254), Expect = 6.290e-22
Identity = 56/145 (38.62%), Postives = 80/145 (55.17%), Query Frame = 0
Query:   79 TKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLS 219
            +K C FFL+G CRYGD C ++H +    E EEE             A+ E  R+ S+  ECG+C E +      KG  FG+L GC H +CL+C+ +WR     K    +CP CRV +  ++ S  +VT PERK  L+  ++K+LS
Sbjct:  207 SKICTFFLQGLCRYGDTCFYAHSLPERVESEEE-----------MLAMGEEIRL-SQDLECGICYENI----IGKGERFGLLSGCSHSFCLTCLRNWRGADQPKQTVRQCPVCRVETKFIIPSSRMVTKPERKKFLIDVYRKNLS 335          
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Match: M4BAQ4_HYAAE (RING-type E3 ubiquitin transferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAQ4_HYAAE)

HSP 1 Score: 102 bits (254), Expect = 7.000e-22
Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 0
Query:   77 ANTKPCAFFLRGRCRYGDCCRFSHDIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKETVKGRTFGILIGCRHVYCLSCITDWRN-----KSKSHECPECRVPSPLVVSSKTLVTDPERKARLVSNFQKSLS 219
            A  K C FFL+G CRYG+ C ++H ++  ++ EEE      +A  E           S+  ECG+C E V  K+      FG+L GC HV+CL+C+ +WR      K    +CP CRV +  ++ S  +VT PERK  L+  ++K+LS
Sbjct:  215 APPKICTFFLQGSCRYGNACFYAHSLSECAQSEEE-----MLARDEEICF-------SQDLECGICYECVVDKD----ERFGLLSGCNHVFCLTCLRNWRGNADQPKQTVRQCPVCRVETSFIIPSSRMVTKPERKKVLIDEYRKNLS 346          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14607.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G211_ECTSI3.060e-4452.07RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5L7F8_9PHAE3.530e-4048.84RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
W2R264_PHYPN1.710e-2439.60RING-type E3 ubiquitin transferase n=38 Tax=Phytop... [more]
A0A329S6E1_9STRA6.300e-2439.60RING-type E3 ubiquitin transferase n=2 Tax=Phytoph... [more]
A0A3R7GYF0_9STRA3.140e-2339.60RING-type E3 ubiquitin transferase n=3 Tax=Phytoph... [more]
A0A6A3LV75_9STRA3.300e-2239.86RING-type E3 ubiquitin transferase n=2 Tax=Phytoph... [more]
A0A2R5GUW3_9STRA3.890e-2239.73RING-type E3 ubiquitin transferase n=1 Tax=Hondaea... [more]
G5AF51_PHYSP5.360e-2239.19RING-type E3 ubiquitin transferase n=1 Tax=Phytoph... [more]
H3H388_PHYRM6.290e-2238.62RING-type E3 ubiquitin transferase n=1 Tax=Phytoph... [more]
M4BAQ4_HYAAE7.000e-2237.16RING-type E3 ubiquitin transferase n=1 Tax=Hyalope... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 78..102
e-value: 9.2E-4
score: 28.5
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 76..103
score: 16.446
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 139..187
e-value: 3.4E-6
score: 36.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 139..188
score: 12.504
NoneNo IPR availableGENE3D4.10.1000.10coord: 64..120
e-value: 1.3E-8
score: 36.6
NoneNo IPR availablePANTHERPTHR11224MAKORIN-RELATEDcoord: 70..102
coord: 112..216
NoneNo IPR availablePANTHERPTHR11224:SF39MAKORIN, RING FINGER PROTEIN, 4coord: 70..102
coord: 112..216
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 25..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 37..44
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 45..222
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..44
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 138..194
IPR041367E3 ligase, CCCH-type zinc fingerPFAMPF18044zf-CCCH_4coord: 80..101
e-value: 3.1E-6
score: 26.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 121..217
e-value: 1.5E-12
score: 48.7
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 139..187
e-value: 4.3E-8
score: 32.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 163..172
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 77..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3714470..3716050 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14607.1mRNA_C-linearis_contig7.14607.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 3713166..3716552 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14607.1 ID=prot_C-linearis_contig7.14607.1|Name=mRNA_C-linearis_contig7.14607.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=223bp
MAAVASAAARVKALKAAHQAAKKTAAAAAAAASAAAAAASAGRSEPTTNT
AGRRQQQQTGSTSGSTDKQQEEKKQRANTKPCAFFLRGRCRYGDCCRFSH
DIARESEGEEEERGEDTIATKEAAALDEAERIQSRKAECGVCLEVVRRKE
TVKGRTFGILIGCRHVYCLSCITDWRNKSKSHECPECRVPSPLVVSSKTL
VTDPERKARLVSNFQKSLSGGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR001841Znf_RING
IPR041367Znf-CCCH_4
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR036855Znf_CCCH_sf