mRNA_C-linearis_contig112.1535.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig112.1535.1 vs. uniprot
Match: A0A6H5KXC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC9_9PHAE) HSP 1 Score: 491 bits (1264), Expect = 7.120e-152 Identity = 466/996 (46.79%), Postives = 520/996 (52.21%), Query Frame = 1
Query: 1 MQASPP--LRLSVEERVDQAVREAVRRALANQRRTQEEELDALSDVLQRSLAALAGERXXXXXXXXXXXXRRRDMVEELSELLGGELSCGDVSRLAMGLERIEREQQTAAG---EGEGGXXXXXXXXPKGRAWVLEV------------------------------------------------------------------------------------------------------KRVEQLEALMAEVRAGKGRKRAAVSSRPGAXXXXXXXXXXXXXXXEKDDGVGDTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFPSSGQDG--NDGAQAGGPETPAV--AGDGA-CAQE------NPDLAATVPVDPPDSSADGN-----GAVGTGRDAGLLARTDEKRHPVFENGXXXXXXXXXXGGLTAQARTSAGSGVILAGAASASKEAERWKMAARRSEAALADLRETLGDVLALSFRCGQESARRR-EGEQRPCSESGDTSLGGQDDVVGGVVAKXXXXXXXXXXXXXVS--ESAEGGSGRSGESCCGTGLS------------------SLCEAKAAAAEELLKRLETLSVDQGSDIARLEASLR-----SGAPRAKV--------SRRGDSGGAGEEKSAAGAAGPGAERVAIMTLSSPALDAAGADATTGAATAAKIQVGECGLPWGEGLDREREREGGRRSRGACPPADIRTEWE---------------------------ELEGLDTYLAHYQGGGGLGSQAVQSVLDRWIDVNKRSILEGWLGHVLHGGPVDAANGNFVPRVQMSSLSKEVRDGLVSVVLPLLLARRGVLLQVLTRERVELVHDIQIRVTPVAGRREGPHTTGXXXXXXXXXXXXXXXXXXADEREHGARIRDMVMKAAHVGYVEEDEG-----RGGGEGAAAWRTPLASVDSLSRQLKDTWENFNANLAAMGTEPVRTGDR------GGSGGG--RMLPEY 2397
M+A PP LRLSVEERV+ AV AVRRALA QR+TQE+ELD+LS+VLQRSLAALAGERXXXXXXXXXXXXRRR+M+EEL+ LLGGELSCGDVSRLAMGLERIERE AA EG+GG +GRAWVLE +RVEQLEAL EVR G+ +KRAAV + G XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX S PS Q+G + +AG P +V GDG CA E AAT P D +++AD G GR A G + A G + S E ERWKMAARRSEA+L+DLR+ LG VLALSF CG+ESARRR EG++ E+G L GG V K V+ E E + + S EAKAAA + LLKRLE L+VDQG DIARLEASL+ S P A S RGD GG E+SA AAG A+ V+ L SPA AA A + Q G G+ GE R GR SR A P DIRT+WE EL+GLDT+L HYQGGGGLGSQAVQ VLDRWIDV+KR+ILEGWLGHVLHGGPVD+ANG+FVPRVQ+SSLSKEVRDG+VSVVLPLLL RRGVLLQVLTRERVELVHD+QIRVTPVAGRR+ P + EREHGARIRDMVMKAAHVGYVEEDEG AAWRTPLASVDSLSRQLKDTWE FNAN A M E G G S GG RMLPEY
Sbjct: 1 MEARPPVPLRLSVEERVEHAVSSAVRRALAEQRKTQEQELDSLSNVLQRSLAALAGERXXXXXXXXXXXXRRRNMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAASEEEGDGGQE-------RGRAWVLEQVRQCLFAKVAVQDQLRSSADEIAADMFEAEEGLMGFQVGPGGGQDAEGASPISRPPPPTDVAVAAVGPGADGGALWSARSESVARARASASEALATSLRLARRRVEQLEALALEVRRGERKKRAAVVALAGVGEGGGXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXASSDGSLSRPSCSQEGAVDRAEEAGRPAAGSVEPGGDGGTCAAEATAEGERTGAAATRPAD--EAAADKQAQEPRGGATAGRTASXXXXXXXXXXXPLHPVKTDHASDGGKGASVSLAAAPGGGDAQPPPVSPESCEVERWKMAARRSEASLSDLRKNLGSVLALSFMCGEESARRRGEGKE----EAGGVRL-----AAGGEVDKEAGCGDPDSVLGVVAGLERVEDAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXFSPGEAKAAAVDVLLKRLEALTVDQGGDIARLEASLQALRGSSATPTAGAAGVSSSGNSGRGDLGGNAHEESAQAAAGLKADDVSDPKLHSPAAAAAAV-----APRGEREQEG--GVSKGEAGRR------GRGSRDASPKRDIRTDWEIEYINRWHAWPPYSSAIGSKVIGVVQQELDGLDTHLGHYQGGGGLGSQAVQGVLDRWIDVSKRNILEGWLGHVLHGGPVDSANGSFVPRVQLSSLSKEVRDGMVSVVLPLLLGRRGVLLQVLTRERVELVHDVQIRVTPVAGRRDAPPSA--RASLGGGGGSRWRPAPPVGEREHGARIRDMVMKAAHVGYVEEDEGGXXXXXXXXXXQAAWRTPLASVDSLSRQLKDTWETFNANFATMAGESRGEGGAAVGGWAGNSRGGAPRMLPEY 956
BLAST of mRNA_C-linearis_contig112.1535.1 vs. uniprot
Match: D8LD17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD17_ECTSI) HSP 1 Score: 469 bits (1206), Expect = 2.390e-145 Identity = 420/868 (48.39%), Postives = 463/868 (53.34%), Query Frame = 1
Query: 1 MQASPP--LRLSVEERVDQAVREAVRRALANQRRTQEEELDALSDVLQRSLAALAGERXXXXXXXXXXXXRRRDMVEELSELLGGELSCGDVSRLAMGLERIEREQQTAAGEGEGGXXXXXXXXPKGRAWVLEVKRVEQLEALMAEVRAGKGRKRAAVSSRPGAXXXXXXXXXXXXXXXEKDDGVGD-TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFPSSGQDGNDGAQAGGPETPAV---------------------AGDGACAQENPDLAAT--VPVDPPDSSADGNGAVGTGRDAGLLARTDEKRHPVFENGXXXXXXXXXXGGLTAQARTSAGSGVILAGAASASK-EAERWKMAARRSEAALADLRETLGDVLALSFRCGQESARRREGEQ-----RPCSESG---DTSLGGQDDVVGGVVA-KXXXXXXXXXXXXXVSESA-EGGSGRSGESCCGTGLSSLCEAKAAAAEELLKRLETLSVDQGSDIARLEASLR-----SGAPRAK------VSRRGDSG-----GAGEEKSAAGAAGPGAERVAIMTLSSPALDAAGADATTGAATAAKIQVGECGLPWGEGLDREREREGGRRSRGACPPADIRTEWEELEGLDTYLAHYQGGGGLGSQAVQSVLDRWIDVNKRSILEGWLGHVLHGGPVDAANGNFVPRVQMSSLSKEVRDGLVSVVLPLLLARRGVLLQVLTRERVELVHDIQIRVTPVAGRREGPHTTGXXXXXXXXXXXXXXXXXXADEREHGARIRDMVMKAAHVGYVEEDEG-------RGGGEGAAAWRTPLASVDSLSRQLKDTWENFNANLAAMGTEPVRTGDRGGSG--------GGRML-PEY 2397
M+A PP LRLSVEERV+ AV AVRRALA QR+TQEEELD+LSDVLQRSLAALAGER XXXXXXXXXXXRRRDM+EEL+ LLGGELSCGDVSRLAMGLERIERE AG XXXXXXX +GRAWVLE RVEQLEAL EVR G+G+KRAA + G E DG+ D XXXXXXXX SFPS Q+G G GA A D AA +P + G A G D K + G G + + + G G AAS+ E ERW++AARRSEA+LADLRETLG VLALSF CG+ESARRR E+ R +E G + G D V+G V A + VSE A EG G S + G S EAKA+A + LLKRLE LSVDQG DIARLE SL+ S P A VS GDSG G+ E+SA AAG AE V+ L SPA AA + GE G +GGR SR A P DIRTEWEEL+GLDT+L HYQGGGGLGSQAVQ VLDRWIDV RDG+VSVVLPLLL RRGVLLQVLTRERVELVHD+QIRVTPVAGRR+ P + EREHGARIRDMVMKAAHVGYVEEDEG AAWRTPLASVDSLSRQLKDTWE FNAN A M E G G G G RML PEY
Sbjct: 1 MEARPPVPLRLSVEERVEHAVSSAVRRALAEQRKTQEEELDSLSDVLQRSLAALAGERDXXXXXXXXXXXRRRDMIEELTSLLGGELSCGDVSRLAMGLERIERE----AGPAAAXXXXXXXXQERGRAWVLE--RVEQLEALALEVRRGEGKKRAAAVALAGVGEGGGAGEAVESG--EPADGLDDGXXXXXXXXXXXDRAVEGVGGAGASASSDGSWSFPSCSQEGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGTGAAATRPADEAAADKQAQEPRGGATAGRTASSGGADDDGCPLLPVKADHASDGGE----------GTSGRLVAAPGGGDAQPPAASSEPGEVERWRVAARRSEASLADLRETLGSVLALSFMCGEESARRRGKEEEAGGVRLPTEGGVDKEAGCGDPDSVLGVVAALERVGDAAAAAAESSVSEEAVEGTGGTSVGTSRGRERFSPGEAKASAVDVLLKRLEALSVDQGGDIARLETSLQALRGSSATPTAATAGAAGVSSLGDSGRVDLGGSAREESAQAAAGLKAEDVSDPKLHSPAAAAAAVAPRGEGDHEGGVSKGEAG-------------QGGRGSRDASPKRDIRTEWEELDGLDTHLGHYQGGGGLGSQAVQGVLDRWIDV---------------------------------------RDGMVSVVLPLLLGRRGVLLQVLTRERVELVHDVQIRVTPVAGRRDAPPSA--RTSLGGGGGSRWRPAPPVGEREHGARIRDMVMKAAHVGYVEEDEGGXXXXXXXXXXXXQAAWRTPLASVDSLSRQLKDTWETFNANFATMAGESREDGGAAGGGWAGDSRGGGPRMLLPEY 796
BLAST of mRNA_C-linearis_contig112.1535.1 vs. uniprot
Match: A0A7S2V056_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V056_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.450e-6 Identity = 41/140 (29.29%), Postives = 62/140 (44.29%), Query Frame = 1
Query: 1855 GPVDAANGNFVPRVQMSSLSKEVRDGLVSVVLPLLLARRGVLLQVLTRERVELVHDIQIRVTPV------------------AGRREGPH--TTGXXXXXXXXXXXXXXXXXXADEREHGARIRDMVMKAAHVGYVEEDE 2214
G V F P +Q+S LS EVR+G +S++LPLLL R+ + + + R+R E+++D++I V PV + PH T A E HG + + +AAH GY +DE
Sbjct: 1 GDVRKRGPQFAPALQISRLSHEVREGFLSLILPLLLRRKDIEVNLSLRQRREVLYDLRILVQPVNPVMSAPPSYSQVDLLGHPADVDSPHSSTGDLILLPTGAEAPPPTATAAAAENAHGVKAARLAARAAHSGYCADDE 140
BLAST of mRNA_C-linearis_contig112.1535.1 vs. uniprot
Match: A0A7S2U813_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U813_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 8.340e-5 Identity = 40/130 (30.77%), Postives = 65/130 (50.00%), Query Frame = 1
Query: 1696 TEWEELEG-LDTYLAHYQGGGGLGSQAVQSVLDRWIDV-NKRSILEGWLGHVLHGGPVDAANGNFVPRVQMSSLSKEVRDGLVSVVLPLLLARRGVLLQVLTRERVELVHDIQIRVTPVAGRREGPHTTG 2079
TEW++L L H GL S V ++L +W D N S L W+ +L+G + VP +++SSL ++RDG +LPLLL R + ++V TR +D+ + ++ R+G + G
Sbjct: 25 TEWDDLAPPLPPPPDH-----GLRSPIVDALLSQWTDDGNMHSSLISWIESILNG-----KDPGTVPPLKISSLDHQIRDGFSMHILPLLLRRSDIHVEVTTRAHRRTTYDLAVSISQSKPSRDGAVSFG 144 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1535.1 >prot_C-linearis_contig112.1535.1 ID=prot_C-linearis_contig112.1535.1|Name=mRNA_C-linearis_contig112.1535.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=800bp MQASPPLRLSVEERVDQAVREAVRRALANQRRTQEEELDALSDVLQRSLAback to top mRNA from alignment at C-linearis_contig112:323653..339092- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1535.1 ID=mRNA_C-linearis_contig112.1535.1|Name=mRNA_C-linearis_contig112.1535.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15440bp|location=Sequence derived from alignment at C-linearis_contig112:323653..339092- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:323653..339092- >mRNA_C-linearis_contig112.1535.1 ID=mRNA_C-linearis_contig112.1535.1|Name=mRNA_C-linearis_contig112.1535.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4800bp|location=Sequence derived from alignment at C-linearis_contig112:323653..339092- (Chordaria linearis ClinC8C monoicous)back to top |