mRNA_C-linearis_contig111.1479.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: D7FL76_ECTSI (Tropinone reductase, putative / tropine dehydrogenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL76_ECTSI) HSP 1 Score: 491 bits (1265), Expect = 1.090e-168 Identity = 246/299 (82.27%), Postives = 272/299 (90.97%), Query Frame = 2
Query: 224 LYVCLLAGSNSGRVSGSPLSHERYQVTILRAERQARWSLEGKTAVVTGGTKGIGKAIVEELACLGARVLTCSRNSADVAACLEEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKATVDFTPEEFAHVMDTNFTSLFLLTQLLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGWMT 1120
+ V +L S V GSPLS ER+Q+T AER+ARWSLEGKTAVVTGGTKGIGKAIVEELACLGA+V+TCSRN ADVAACLEEWKSKGL+V GTAADVTTAEGRE+LVK A+EHFGGLLDILVNNVGT+IRKATVD+TPEE A+VMDTNFTSLFLLT+LL+P LKAAAA +G+RENGGSSV+NISSVAG+T IKSG+PYA+SKAAMNQ+TR WGCEWAPDGIRVNAVAPWYTKTPLTEPVQAD +V I QRTPM RWADADEVSG+VAFLCM+GAGYITSQVI+TDGGFTANGWMT
Sbjct: 9 IQVLVLTLSAVASVWGSPLSQERFQITTFGAERRARWSLEGKTAVVTGGTKGIGKAIVEELACLGAKVITCSRNPADVAACLEEWKSKGLLVEGTAADVTTAEGRESLVKLAEEHFGGLLDILVNNVGTNIRKATVDYTPEELAYVMDTNFTSLFLLTKLLHPLLKAAAAVKGSRENGGSSVINISSVAGITPIKSGSPYAASKAAMNQVTRLWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADPVRVNEITQRTPMKRWADADEVSGMVAFLCMKGAGYITSQVIATDGGFTANGWMT 307
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: D7FL79_ECTSI (Tropinone reductase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL79_ECTSI) HSP 1 Score: 358 bits (920), Expect = 3.550e-117 Identity = 182/269 (67.66%), Postives = 217/269 (80.67%), Query Frame = 2
Query: 314 AERQARWSLEGKTAVVTGGTKGIGKAIVEELACLGARVLTCSRNSADVAACLEEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKA-TVDFTPEEFAHVMDTNFTSLFLLTQLLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGWM 1117
A R+A+WSLEG+TA+VTGGTKGIGKAIVEELACLGA+VLTCSR V AC+ EW++KGL VHG A DVTTAEGR+ L +A+EHF G LDILVNNVG SIRK+ T DFTPEEF +++TNF+++ LT+L +P LKAAAAAEGAR+ GGSSVVNISS+AG+T++K+G YA+SKAA+N+LT NWGCEWA DGIRVNAVAP T TP TE V ++ R PMGRWAD E+SG VAFLCM+GA YITSQVI DGG+ +NGWM
Sbjct: 6 AGRRAQWSLEGRTALVTGGTKGIGKAIVEELACLGAKVLTCSRTEDGVIACITEWRAKGLEVHGIAVDVTTAEGRQELFSAAEEHFDGALDILVNNVGRSIRKSSTFDFTPEEFETIINTNFSTVLSLTKLFHPLLKAAAAAEGARDKGGSSVVNISSIAGVTAVKTGAAYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSTESVPRSTE----LMDRIPMGRWADPHEISGQVAFLCMKGASYITSQVICVDGGWASNGWM 270
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: A0A835YM08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM08_9STRA) HSP 1 Score: 325 bits (833), Expect = 2.880e-104 Identity = 167/266 (62.78%), Postives = 200/266 (75.19%), Query Frame = 2
Query: 323 QARWSLEGKTAVVTGGTKGIGKAIVEELACLGARVLTCSRNSADVAACLEEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKATVDFTPEEFAHVMDTNFTSLFLLTQLLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGWMT 1120
++RW L+G+ A+VTGGTKGIG AIV ELA LGA V TC+R+ AD+ CL EW+++GL VHG+ ADV++AE R AL++ E FGG LDILVNNVGTSIR+ATVD+T EE HV+ NF S F + QL +P LK A GG SVVNI SVAG+TSIKSGTPYA+SKAAM+++T+N CEWA DGIRVN VAPWYT TPL PV D K I+ RTPM R A+A+EVS +VAFLCMRGA YIT QV+ DGGFT NGW+T
Sbjct: 2 KSRWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEA--------QGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGWIT 259
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: A0A6H5JMS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS4_9PHAE) HSP 1 Score: 291 bits (745), Expect = 1.970e-90 Identity = 162/297 (54.55%), Postives = 196/297 (65.99%), Query Frame = 2
Query: 374 KGIGKAIVEELACLGARVLTCSRNSADVAACL-------------------------EEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKA-TVDFTPEEFAHVMDTNFTSLFLLTQ-----------------------LLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGWM 1117
+GIGKAIVEELACLGA+VLTCSR V AC+ +EW++KGL V+G A DVTTAEGR+ L +A+E F G LDILVNNVG SIRK+ T D+TPEEF ++DTNF+++ LT+ L +P LKAAAAAEGAR GGSSVVNISS+AG+ ++K+G YA+SKAA+N+LT NWGCEWA DGIRVNAVAP T TP TE V ++ R PMGRWA+ E+SG VAFLCM+GA YITSQVI DGG+ +NGWM
Sbjct: 15 RGIGKAIVEELACLGAKVLTCSRTEDGVTACITGCLCVVLRDLSSRAFAVVLCLWLQQEWRAKGLEVYGIAVDVTTAEGRQELYSAAEERFDGALDILVNNVGRSIRKSSTFDYTPEEFETIIDTNFSTVLSLTKARLYVFTLICLGRFASLIPCSVFLFHPLLKAAAAAEGARAKGGSSVVNISSIAGVIAVKTGAAYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSTESVPRSTE----LMDRIPMGRWAEPHEISGQVAFLCMKGASYITSQVICVDGGWASNGWM 307
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: A0A087G546_ARAAL (Uncharacterized protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087G546_ARAAL) HSP 1 Score: 286 bits (733), Expect = 2.720e-89 Identity = 145/262 (55.34%), Postives = 186/262 (70.99%), Query Frame = 2
Query: 329 RWSLEGKTAVVTGGTKGIGKAIVEELACLGARVLTCSRNSADVAACLEEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKATVDFTPEEFAHVMDTNFTSLFLLTQLLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGW 1114
RWSL GKTA+VTGGT+GIG+A+VEELA GA+V TCSRN ++ ACL +WKS GL+V+G+ D + + RE L++ F G L+ILVNNVGT+IRK TVD++ EE+A +M TN S F L+QL +P LKA+ G SVV ISSVAGL +++G+ Y ++K A+NQLTRN CEWA D IR N VAPWY KT L EP+ VEA++ RTP+GR + +EVS +VAFLC+ + YIT QVIS DGGFT NG+
Sbjct: 6 RWSLAGKTALVTGGTRGIGRAVVEELARFGAKVYTCSRNEEELKACLADWKSNGLVVYGSVCDASVKDQREQLMQEVSAMFSGKLNILVNNVGTNIRKPTVDYSSEEYAKIMSTNLESAFHLSQLAHPLLKAS---------GVGSVVFISSVAGLVHVRTGSIYGATKGALNQLTRNLACEWAGDNIRTNCVAPWYIKTSLVEPLLEKKDFVEAVVSRTPLGRVGEPEEVSSLVAFLCLPASSYITGQVISVDGGFTVNGF 258
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: TRNHF_ARATH (Tropinone reductase homolog At5g06060 n=9 Tax=Brassicaceae TaxID=3700 RepID=TRNHF_ARATH) HSP 1 Score: 281 bits (719), Expect = 3.540e-87 Identity = 141/266 (53.01%), Postives = 185/266 (69.55%), Query Frame = 2
Query: 317 ERQARWSLEGKTAVVTGGTKGIGKAIVEELACLGARVLTCSRNSADVAACLEEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKATVDFTPEEFAHVMDTNFTSLFLLTQLLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGW 1114
E RWSL GKTA+VTGGT+GIG+A+VEELA GA+V TCSRN ++ ACL +WK+ GL+V G+ D + + RE L++ A F G L+IL+NNVGT++RK TV+++ EE+A +M TN S F L+Q+ +P LKA+ G S+V ISSVAGL + SG+ Y ++K A+NQLTRN CEWA D IR N VAPWY KT L E + VEA++ RTP+GR + +EVS +VAFLC+ + YIT QVIS DGGFT NG+
Sbjct: 2 ETDKRWSLAGKTALVTGGTRGIGRAVVEELAKFGAKVHTCSRNQEELNACLNDWKANGLVVSGSVCDASVRDQREKLIQEASSAFSGKLNILINNVGTNVRKPTVEYSSEEYAKIMSTNLESAFHLSQIAHPLLKAS---------GVGSIVFISSVAGLVHLSSGSIYGATKGALNQLTRNLACEWASDNIRTNCVAPWYIKTSLVETLLEKKEFVEAVVSRTPLGRVGEPEEVSSLVAFLCLPASSYITGQVISVDGGFTVNGF 258
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: A0A5N6QE30_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QE30_9ROSI) HSP 1 Score: 281 bits (718), Expect = 5.700e-87 Identity = 147/263 (55.89%), Postives = 187/263 (71.10%), Query Frame = 2
Query: 329 RWSLEGKTAVVTGGTKGIGKAIVEELACLGARVLTCSRNSADVAACLEEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKATVDFTPEEFAHVMDTNFTSLFLLTQLLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGWM 1117
RWSL+G TA+VTGGT+GIG A+VEELA GA V TCSRN A+++ CL+EW++KG +V G+ D ++ RE LV+ FGG L+IL+NNVGT+IRK T++FTPEE++ +M TNF S F L QL +P LKA+ G SVV ISSVAG+ SI SG+ YA++KAA+NQLT+N CEWA D IR N VAPWYT+T L E + AD VE I +TP+ R A+A+EVS +VAFLC+ A YIT Q IS DGG T N +
Sbjct: 9 RWSLKGMTALVTGGTRGIGHAVVEELASFGASVHTCSRNEAELSKCLKEWEAKGFVVSGSVCDASSRAHRERLVEEVASVFGGKLNILINNVGTNIRKPTIEFTPEEYSTLMTTNFESTFHLCQLAHPLLKAS---------GIGSVVFISSVAGVVSIGSGSIYAATKAAINQLTKNLACEWAKDNIRTNCVAPWYTRTSLVENLIADNKFVEEIACKTPLERVAEAEEVSSLVAFLCLPAASYITGQTISVDGGMTVNAFQ 262
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: A0A6J1CCC2_MOMCH (tropinone reductase homolog At5g06060 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CCC2_MOMCH) HSP 1 Score: 280 bits (717), Expect = 9.480e-87 Identity = 141/263 (53.61%), Postives = 191/263 (72.62%), Query Frame = 2
Query: 326 ARWSLEGKTAVVTGGTKGIGKAIVEELACLGARVLTCSRNSADVAACLEEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKATVDFTPEEFAHVMDTNFTSLFLLTQLLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGW 1114
+RWSL+G TA+VTGGT+GIG+A+VEELA LGA V TCSRN A++ CL+EW+ KG +V G+ D ++ RE L++ + F G L+ILVNNVG +IRK T++++ EEF+ +M TNF S + L+QL +P LKA+ G S+V ISSV GL SI SG+ YA++K+A+NQLT+N CEWA D IR N VAPWYT TPL E + + + V+ ++ RTP+GR +++EVS +VAFLC+ A YIT Q+IS DGGFTANG+
Sbjct: 11 SRWSLKGSTALVTGGTRGIGRAVVEELAALGASVHTCSRNEAELNRCLKEWEGKGFVVRGSVCDASSRTHRERLMQEVESAFNGRLNILVNNVGKNIRKPTIEYSLEEFSSLMTTNFESAYHLSQLSHPLLKAS---------GNGSIVFISSVGGLMSIGSGSIYAATKSAINQLTKNLACEWAKDNIRSNCVAPWYTNTPLVEKLLDNKTFVDKVVSRTPLGRIGESNEVSSLVAFLCLPTASYITGQIISVDGGFTANGF 264
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: A0A6J1IKI1_CUCMA (tropinone reductase homolog At5g06060 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IKI1_CUCMA) HSP 1 Score: 279 bits (714), Expect = 2.650e-86 Identity = 142/263 (53.99%), Postives = 190/263 (72.24%), Query Frame = 2
Query: 326 ARWSLEGKTAVVTGGTKGIGKAIVEELACLGARVLTCSRNSADVAACLEEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKATVDFTPEEFAHVMDTNFTSLFLLTQLLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGW 1114
+RWSL+G TA+VTGGT+GIG+A+VEELA LGA V TCSRN ++ CL+EW+ KG +V G+ D ++ RE LV+ F G L+ILVNNVGT+IRK +++++ EE++ +M TNF S+F L+QL +P LKA+ G S+V +SSV GL SI SG+ YA+SK+AMNQLT+N CEWA D IR N VAPWYT T L E + + + V+ ++ RTP+GR +++EVS +VAFLCM A YIT Q+IS DGGFTANG+
Sbjct: 11 SRWSLKGFTALVTGGTRGIGRAVVEELAGLGASVHTCSRNELELNQCLKEWEGKGFVVSGSVCDASSRTQREKLVQEVASAFNGTLNILVNNVGTNIRKPSIEYSLEEYSTLMTTNFESVFHLSQLAHPLLKAS---------GNGSIVFVSSVGGLVSIGSGSIYAASKSAMNQLTKNLACEWAKDNIRSNTVAPWYTNTSLVEKLLDNKTFVDKVVSRTPLGRIGESNEVSSLVAFLCMPAASYITGQIISVDGGFTANGF 264
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Match: V4LL57_EUTSA (Uncharacterized protein n=6 Tax=Brassicaceae TaxID=3700 RepID=V4LL57_EUTSA) HSP 1 Score: 278 bits (711), Expect = 5.140e-86 Identity = 141/266 (53.01%), Postives = 183/266 (68.80%), Query Frame = 2
Query: 317 ERQARWSLEGKTAVVTGGTKGIGKAIVEELACLGARVLTCSRNSADVAACLEEWKSKGLIVHGTAADVTTAEGREALVKSAQEHFGGLLDILVNNVGTSIRKATVDFTPEEFAHVMDTNFTSLFLLTQLLYPFLKAAAAAEGARENGGSSVVNISSVAGLTSIKSGTPYASSKAAMNQLTRNWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADASKVEAIIQRTPMGRWADADEVSGIVAFLCMRGAGYITSQVISTDGGFTANGW 1114
E RWSL GKTA+VTGGT+GIG+AIVEELA GA V TCSRN ++ ACL+ WKS GL+V G+ D + + RE L++ F G L+IL+NNVGT+IRK TV+++ EE+A +M TN S F +Q+ +P LK++ G S+V ISSVAGL ++SG+ Y ++K A+NQLTRN CEWA D IR N VAPWY KT L EP+ VEA++ RTP+GR + +EV+ +VAFLC+ A YIT QVIS DGG T NG+
Sbjct: 2 ETDKRWSLVGKTALVTGGTRGIGRAIVEELARFGATVHTCSRNQEELKACLDVWKSNGLVVSGSVCDASVRDQREKLIQEVSSAFSGKLNILINNVGTNIRKPTVEYSSEEYAKIMSTNLESAFHFSQIAHPLLKSS---------GVGSIVFISSVAGLVHLRSGSIYGATKGALNQLTRNLACEWAGDNIRTNCVAPWYIKTSLVEPLLEKKDFVEAVVSRTPLGRVGEPEEVASLVAFLCLPAASYITGQVISVDGGLTVNGF 258 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig111.1479.1 >prot_C-linearis_contig111.1479.1 ID=prot_C-linearis_contig111.1479.1|Name=mRNA_C-linearis_contig111.1479.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=315bp MFSWCGFRTLMGTTSLYVCLLAGSNSGRVSGSPLSHERYQVTILRAERQAback to top mRNA from alignment at C-linearis_contig111:26978..32332+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig111.1479.1 ID=mRNA_C-linearis_contig111.1479.1|Name=mRNA_C-linearis_contig111.1479.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5355bp|location=Sequence derived from alignment at C-linearis_contig111:26978..32332+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig111:26978..32332+ >mRNA_C-linearis_contig111.1479.1 ID=mRNA_C-linearis_contig111.1479.1|Name=mRNA_C-linearis_contig111.1479.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1890bp|location=Sequence derived from alignment at C-linearis_contig111:26978..32332+ (Chordaria linearis ClinC8C monoicous)back to top |