mRNA_C-linearis_contig110.1457.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1457.1
Unique NamemRNA_C-linearis_contig110.1457.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.990e-27
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = -1
Query:    1 EIPVY--GGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
            EIPV+  GG++KQEL  +YP +++V+LAFHAWN+L HALT  +DKK +RRA SP  ALREL  +YDP TTMQ+ +D+Q L+   IP   +P+   R ML  AE L  KG
Sbjct:  223 EIPVHNNGGRTKQELCIDYP-SQQVELAFHAWNFLSHALTTDEDKKTIRRAQSPLGALRELQEMYDPITTMQNADDMQKLLVKRIPDDRHPVHTLRDMLTTAERLNTKG 330          
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5KSE5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.490e-25
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = -1
Query:    1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
            EIPV  GK+K  L  +Y  +E+V+LAFHAWN+L HAL K  D+KIM+RA +PQ ALREL  I+DP +++Q  EDL+SL +T I  G NP  A  +ML  A+SL +KG
Sbjct:   19 EIPVNSGKTKFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKRAETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGENPQNALNEMLQTAKSLTEKG 123          
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5L0T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.320e-24
Identity = 57/107 (53.27%), Postives = 73/107 (68.22%), Query Frame = -1
Query:    1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
            EIPV  GKSK  L  +Y  +E+V+LAFHAWN+L HAL K  D+KIM+RA +PQ ALREL  I D  +++Q  EDL+SL +T I  G NP  A  +ML  A+S  +KG
Sbjct:   19 EIPVNSGKSKFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKRAVTPQGALRELKTINDAESSVQPSEDLKSLTSTKISRGENPQNALNEMLHTAKSSTEKG 123          
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5JKT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.900e-24
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = -1
Query:    1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
            EIPV  GKSK  L  ++  +E+V+LAFHAWN+L HA  K  D+KIM+RA  PQ ALRELN ++DP +++Q  EDL+SL +T +  G NP  A  +ML  A+S  +KG
Sbjct:   65 EIPVNSGKSKFSLSQQHR-SEQVELAFHAWNFLSHAW-KETDRKIMKRAEMPQGALRELNTMHDPESSVQPSEDLKSLTSTKLFRGENPQNALTEMLQSAKSSTEKG 169          
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5KZD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.790e-23
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = -1
Query:   13 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESL 321
            EIPV   KSK  L  +Y  +E+V+LAFHAWN+L HAL K +D+KIM+RA +PQ ALREL  I+DP +++Q  EDL+SL +T I  G NP  A  +ML  A+SL
Sbjct:  144 EIPVNSEKSKVSLSQQYR-SEQVELAFHAWNFLSHAL-KENDRKIMKRAETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGDNPQNALHEMLQTAKSL 244          
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5JEB2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.130e-23
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = -1
Query:    1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
            EIPV  GK K  L  +Y  +E+V+LAFHAWN+L HAL K  D+KIM+RA +PQ ALREL  I+DP +++Q  E+L+SL +T I  G NP  +  +ML  A+SL +KG
Sbjct:  123 EIPVISGKRKFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKRAETPQGALRELKTIHDPESSVQPSENLKSLTSTKISRGENPQNSLDEMLQTAKSLTEKG 227          
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5JNA4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.670e-23
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = -1
Query:   55 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANP 321
            EIPV  GKSK  L  +Y  +E+V+LAFHAWN+L HAL K  D+KIM+RA +PQ ALREL  I+DP +++Q  EDL+SL +T I  G NP
Sbjct:   64 EIPVNSGKSKFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKRAETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGENP 150          
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5JEF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.550e-23
Identity = 56/107 (52.34%), Postives = 71/107 (66.36%), Query Frame = -1
Query:    1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
            EIPV  GKS   L  +Y  +E+V+LAFHAWN+L HAL K  D+KIM+ A +PQ ALREL  I+DP +++Q  EDL+SL +T I  G NP  A   ML    SL +KG
Sbjct:  163 EIPVNSGKSTFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKGAETPQGALRELKTIHDPQSSVQPSEDLRSLTSTKISRGENPQNALNVMLQTGNSLTEKG 267          
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5K294_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K294_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.420e-22
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = -1
Query:    1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
            EIPV  GKSK  L  +Y  +E+V+L FHAWN+L H++ K  D+KI++R+ +PQ ALREL  I+DP +++Q  EDL+SL +T I  G NP  A  +ML  A+SL +KG
Sbjct:  163 EIPVNSGKSKFSLSQQYR-SEQVELEFHAWNFLSHSV-KERDRKIVKRSETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGENPQNALNEMLQTAKSLTEKG 267          
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5K0G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.070e-22
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = -1
Query:    1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
            EIPV  GKSK  L  +Y  +E+V+ AFHAWN+L HAL K  D+KI++RA + Q ALREL  I DP +++Q  EDL+SL +T I  G NP  A  +ML  A+SL +KG
Sbjct:  195 EIPVNSGKSKFSLSQQYR-SEQVEFAFHAWNFLSHAL-KEKDRKIIKRAETLQGALRELKTIQDPKSSLQPSEDLKSLTSTKISRGENPQNALNEMLQTAKSLTEKG 299          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L175_9PHAE3.990e-2754.13Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSE5_9PHAE5.490e-2554.21CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L0T5_9PHAE2.320e-2453.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKT3_9PHAE9.900e-2451.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZD7_9PHAE2.790e-2354.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEB2_9PHAE3.130e-2352.34CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JNA4_9PHAE3.670e-2357.30Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF9_9PHAE5.550e-2352.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K294_9PHAE1.420e-2250.47CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K0G6_9PHAE2.070e-2252.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:250256..250582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927472.9596832-CDS-C-linearis_contig110:250255..2505821622927472.9596832-CDS-C-linearis_contig110:250255..250582Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 250256..250582 +
1690879721.3869646-CDS-C-linearis_contig110:250255..2505821690879721.3869646-CDS-C-linearis_contig110:250255..250582Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 250256..250582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1457.1prot_C-linearis_contig110.1457.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 250256..250582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1457.1

>prot_C-linearis_contig110.1457.1 ID=prot_C-linearis_contig110.1457.1|Name=mRNA_C-linearis_contig110.1457.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
PFLFQTLGLVEHFSRREHWVRACGDCCCDQRLQVFFRLHRSGGVIDVVQL
PERLLGRMCPPHDFLVIAFREGVHEVVPRMKSEIYFLSGWVLVVKLLLGF
SPVHGDLR*
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mRNA from alignment at C-linearis_contig110:250256..250582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1457.1 ID=mRNA_C-linearis_contig110.1457.1|Name=mRNA_C-linearis_contig110.1457.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at C-linearis_contig110:250256..250582+ (Chordaria linearis ClinC8C monoicous)
CCCTTTCTTTTCCAGACTCTCGGCCTGGTCGAGCATTTTTCGCGGCGCGA ACATTGGGTTCGCGCCTGCGGGGATTGTTGTTGCGATCAGCGACTGCAGG TCTTCTTCCGATTGCATCGTAGTGGTGGGGTCATAGATGTTGTTCAACTC CCTGAGCGCCTCTTGGGGCGAATGTGCCCTCCTCATGATTTTCTTGTCAT CGCCTTTCGTGAGGGCGTGCATGAGGTAGTTCCACGCATGAAAAGCGAGA TCTACTTCCTCAGCGGGTGGGTACTCGTCGTAAAGCTCCTGCTTGGATTT TCCCCCGTACACGGGGATCTCCGGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig110:250256..250582+

>mRNA_C-linearis_contig110.1457.1 ID=mRNA_C-linearis_contig110.1457.1|Name=mRNA_C-linearis_contig110.1457.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig110:250256..250582+ (Chordaria linearis ClinC8C monoicous)
CCCTTTCTTTTCCAGACTCTCGGCCTGGTCGAGCATTTTTCGCGGCGCGA
ACATTGGGTTCGCGCCTGCGGGGATTGTTGTTGCGATCAGCGACTGCAGG
TCTTCTTCCGATTGCATCGTAGTGGTGGGGTCATAGATGTTGTTCAACTC
CCTGAGCGCCTCTTGGGGCGAATGTGCCCTCCTCATGATTTTCTTGTCAT
CGCCTTTCGTGAGGGCGTGCATGAGGTAGTTCCACGCATGAAAAGCGAGA
TCTACTTCCTCAGCGGGTGGGTACTCGTCGTAAAGCTCCTGCTTGGATTT
TCCCCCGTACACGGGGATCTCCGGTGACCCTTTCTTTTCCAGACTCTCGG
CCTGGTCGAGCATTTTTCGCGGCGCGAACATTGGGTTCGCGCCTGCGGGG
ATTGTTGTTGCGATCAGCGACTGCAGGTCTTCTTCCGATTGCATCGTAGT
GGTGGGGTCATAGATGTTGTTCAACTCCCTGAGCGCCTCTTGGGGCGAAT
GTGCCCTCCTCATGATTTTCTTGTCATCGCCTTTCGTGAGGGCGTGCATG
AGGTAGTTCCACGCATGAAAAGCGAGATCTACTTCCTCAGCGGGTGGGTA
CTCGTCGTAAAGCTCCTGCTTGGATTTTCCCCCGTACACGGGGATCTCCG
GTGA
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