mRNA_C-linearis_contig110.1457.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 114 bits (284), Expect = 3.990e-27 Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = -1
Query: 1 EIPVY--GGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
EIPV+ GG++KQEL +YP +++V+LAFHAWN+L HALT +DKK +RRA SP ALREL +YDP TTMQ+ +D+Q L+ IP +P+ R ML AE L KG
Sbjct: 223 EIPVHNNGGRTKQELCIDYP-SQQVELAFHAWNFLSHALTTDEDKKTIRRAQSPLGALRELQEMYDPITTMQNADDMQKLLVKRIPDDRHPVHTLRDMLTTAERLNTKG 330
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5KSE5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE5_9PHAE) HSP 1 Score: 107 bits (266), Expect = 5.490e-25 Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = -1
Query: 1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
EIPV GK+K L +Y +E+V+LAFHAWN+L HAL K D+KIM+RA +PQ ALREL I+DP +++Q EDL+SL +T I G NP A +ML A+SL +KG
Sbjct: 19 EIPVNSGKTKFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKRAETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGENPQNALNEMLQTAKSLTEKG 123
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5L0T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T5_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.320e-24 Identity = 57/107 (53.27%), Postives = 73/107 (68.22%), Query Frame = -1
Query: 1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
EIPV GKSK L +Y +E+V+LAFHAWN+L HAL K D+KIM+RA +PQ ALREL I D +++Q EDL+SL +T I G NP A +ML A+S +KG
Sbjct: 19 EIPVNSGKSKFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKRAVTPQGALRELKTINDAESSVQPSEDLKSLTSTKISRGENPQNALNEMLHTAKSSTEKG 123
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5JKT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT3_9PHAE) HSP 1 Score: 100 bits (248), Expect = 9.900e-24 Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = -1
Query: 1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
EIPV GKSK L ++ +E+V+LAFHAWN+L HA K D+KIM+RA PQ ALRELN ++DP +++Q EDL+SL +T + G NP A +ML A+S +KG
Sbjct: 65 EIPVNSGKSKFSLSQQHR-SEQVELAFHAWNFLSHAW-KETDRKIMKRAEMPQGALRELNTMHDPESSVQPSEDLKSLTSTKLFRGENPQNALTEMLQSAKSSTEKG 169
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5KZD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD7_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.790e-23 Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = -1
Query: 13 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESL 321
EIPV KSK L +Y +E+V+LAFHAWN+L HAL K +D+KIM+RA +PQ ALREL I+DP +++Q EDL+SL +T I G NP A +ML A+SL
Sbjct: 144 EIPVNSEKSKVSLSQQYR-SEQVELAFHAWNFLSHAL-KENDRKIMKRAETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGDNPQNALHEMLQTAKSL 244
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5JEB2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB2_9PHAE) HSP 1 Score: 102 bits (255), Expect = 3.130e-23 Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = -1
Query: 1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
EIPV GK K L +Y +E+V+LAFHAWN+L HAL K D+KIM+RA +PQ ALREL I+DP +++Q E+L+SL +T I G NP + +ML A+SL +KG
Sbjct: 123 EIPVISGKRKFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKRAETPQGALRELKTIHDPESSVQPSENLKSLTSTKISRGENPQNSLDEMLQTAKSLTEKG 227
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5JNA4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA4_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 3.670e-23 Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = -1
Query: 55 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANP 321
EIPV GKSK L +Y +E+V+LAFHAWN+L HAL K D+KIM+RA +PQ ALREL I+DP +++Q EDL+SL +T I G NP
Sbjct: 64 EIPVNSGKSKFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKRAETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGENP 150
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5JEF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF9_9PHAE) HSP 1 Score: 100 bits (248), Expect = 5.550e-23 Identity = 56/107 (52.34%), Postives = 71/107 (66.36%), Query Frame = -1
Query: 1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
EIPV GKS L +Y +E+V+LAFHAWN+L HAL K D+KIM+ A +PQ ALREL I+DP +++Q EDL+SL +T I G NP A ML SL +KG
Sbjct: 163 EIPVNSGKSTFSLSQQYR-SEQVELAFHAWNFLSHAL-KEKDRKIMKGAETPQGALRELKTIHDPQSSVQPSEDLRSLTSTKISRGENPQNALNVMLQTGNSLTEKG 267
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5K294_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K294_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.420e-22 Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = -1
Query: 1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
EIPV GKSK L +Y +E+V+L FHAWN+L H++ K D+KI++R+ +PQ ALREL I+DP +++Q EDL+SL +T I G NP A +ML A+SL +KG
Sbjct: 163 EIPVNSGKSKFSLSQQYR-SEQVELEFHAWNFLSHSV-KERDRKIVKRSETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGENPQNALNEMLQTAKSLTEKG 267
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Match: A0A6H5K0G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G6_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.070e-22 Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = -1
Query: 1 EIPVYGGKSKQELYDEYPPAEEVDLAFHAWNYLMHALTKGDDKKIMRRAHSPQEALRELNNIYDPTTTMQSEEDLQSLIATTIPAGANPMFAPRKMLDQAESLEKKG 321
EIPV GKSK L +Y +E+V+ AFHAWN+L HAL K D+KI++RA + Q ALREL I DP +++Q EDL+SL +T I G NP A +ML A+SL +KG
Sbjct: 195 EIPVNSGKSKFSLSQQYR-SEQVEFAFHAWNFLSHAL-KEKDRKIIKRAETLQGALRELKTIQDPKSSLQPSEDLKSLTSTKISRGENPQNALNEMLQTAKSLTEKG 299 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig110.1457.1 >prot_C-linearis_contig110.1457.1 ID=prot_C-linearis_contig110.1457.1|Name=mRNA_C-linearis_contig110.1457.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp PFLFQTLGLVEHFSRREHWVRACGDCCCDQRLQVFFRLHRSGGVIDVVQLback to top mRNA from alignment at C-linearis_contig110:250256..250582+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig110.1457.1 ID=mRNA_C-linearis_contig110.1457.1|Name=mRNA_C-linearis_contig110.1457.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at C-linearis_contig110:250256..250582+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig110:250256..250582+ >mRNA_C-linearis_contig110.1457.1 ID=mRNA_C-linearis_contig110.1457.1|Name=mRNA_C-linearis_contig110.1457.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig110:250256..250582+ (Chordaria linearis ClinC8C monoicous)back to top |