mRNA_C-linearis_contig110.1443.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 358 bits (920), Expect = 1.920e-120 Identity = 177/259 (68.34%), Postives = 203/259 (78.38%), Query Frame = 1
Query: 1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
KVFR RFRVP+PFF ELVKL++ K+WFS G KDA R GIP ELKVL G+GNCFDD+ QLS MS+S+A A FH FC+H A EMF+EHIYLPTGTY +VM ++ +LG TGA GSTDVTHIG MCPFTLGRS+TGKEGFPTIAY+VTVDHAGR +A+T GF G TNDKT IRYD+GVN I+TE QY + YKLRK +GT R R+GC+LIVDNGY+E +NEDTAFSR LESVRKDVECFFGILK
Sbjct: 94 KVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILK 334
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 357 bits (916), Expect = 1.110e-118 Identity = 193/340 (56.76%), Postives = 208/340 (61.18%), Query Frame = 1
Query: 1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELK--------------------------------------------------------------------------------------------------------------VLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSK 690
KVFRTRFRVPH FFLELVK+A+GKKWFS KDAVGR GIP ELK +LTALQILGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTIIRYDAGV+ IKT+ QY TYKLR+ADGTFRERKGCY IVDNGYHE +L P++
Sbjct: 96 KVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLLLVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVTRTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNR 435
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 352 bits (902), Expect = 3.840e-116 Identity = 164/257 (63.81%), Postives = 197/257 (76.65%), Query Frame = 1
Query: 7 FRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
FR FR+P+PFF+ELV L K + WF G +DA GR GIP +LKVL LQIL RGNCF DI +S +S AAATFH F ++FA+EM+ EHI+LPTG YQ VM YD+LG +GA GSTDVTHI WGMCP+ RSYTGKEG+PT+AYQVTVDH RV+A+T GFTGSTNDK+IIRYD V I+ + Y + + + +ADGT + KGCYL+VDNGYH+WVTLI PSKYP + D AFS+ LESVRKDVECFFGI+K
Sbjct: 116 FRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVK 372
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 334 bits (857), Expect = 6.580e-111 Identity = 156/204 (76.47%), Postives = 175/204 (85.78%), Query Frame = 1
Query: 151 QILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECF 762
Q+LG+GNCFDD+ QLS MSKSMA TFH FC+HFA EMF+EHIYLPTGTY +VM ++ +LG TGA GSTDVTHIGW MCPFTLGRS+TGKEGFPTIAY VTVDH GR +A+T GFTG+TNDKTIIRYD+GVN I+T QY + YKLRKA+GT R R+GC+LIVDNGYHEWVTLIAPSKYP NEDTAFSR LESVRKDV CF
Sbjct: 42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF 245
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 329 bits (844), Expect = 3.420e-107 Identity = 153/257 (59.53%), Postives = 186/257 (72.37%), Query Frame = 1
Query: 7 FRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
FR FRVP+PFF+ LV+L + + WF G D GR +P ELKVL LQIL RGN F DI +S +S A+TFH FCK+FA E+++E++YLPTG VM YD++G GA+GSTDVTHI WGMCP+ R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD V I+T+ Y + YKL DG E KGCYL+VDNGYH+W TLI PSK P + D FS+ LES RKDVEC+FGILK
Sbjct: 132 FRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILK 388
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 318 bits (816), Expect = 1.620e-103 Identity = 159/261 (60.92%), Postives = 185/261 (70.88%), Query Frame = 1
Query: 1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
K FR FRVP+PFFL LV+L K K WF+ +DA GR P E KVL L ILGRGN F I LS MS FH FC+HFA EM++EHI+LP+ + D VM Y+KLG GA+GSTDVTHIGW CP+ GRSYTGKEG PT+ YQVTV+HAGRV+A+T GFTGSTNDKTII D V+ I+T+ QY + + + K DGT KGCYLIVDNGYH+W LI PSKYP + D FS+ LESVRKDVECFFGILK
Sbjct: 83 KKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILK 343
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 316 bits (809), Expect = 2.470e-103 Identity = 155/261 (59.39%), Postives = 182/261 (69.73%), Query Frame = 1
Query: 1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
K FR FRVP FFL LV L K K WF+ G DA R P E KVL L ILGRGNCF I Q+S MS FH FCKHFA+EM++EHIYLP+ + D VM YD+LG +GA+GS DVTHIGW CP+ L RSYTGKEG PT+ YQVTV+HAGR IA+T GFT STNDKT + +DA V I+T+ QY + T+ + DGT KGCYL+VDNGYH+W L+ P+KYP + D FS+ LESVRKDVECFFGILK
Sbjct: 54 KQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILK 314
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE) HSP 1 Score: 302 bits (774), Expect = 1.230e-99 Identity = 143/166 (86.14%), Postives = 155/166 (93.37%), Query Frame = 1
Query: 133 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKG 630
+VLTALQILGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTI+RYDAGV+ IKT+ QY TYKLR+ADGT+RERKG
Sbjct: 3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKG 168
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE) HSP 1 Score: 311 bits (797), Expect = 1.740e-98 Identity = 177/358 (49.44%), Postives = 210/358 (58.66%), Query Frame = 1
Query: 4 VFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTAL-----QILGRGN----------CFDDILQL---------------------------SLMSKSMAAATF---------------------------------HNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNG----------YHE---------------WVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
VFR RFRVP+PFF LVKL++ K+WFS G KD R GIP ELK+ T+ Q+ G N FD+ + L + + +M T H FC+HFA EMF+EHIYL TGTY +VM ++ +LG TGA GST+VTHIGW MCPFTLGRS+TGKEGFPTIA +VTVDHAGR +A+T GFTG+TNDKTIIRYD+GVN I+TE QY + YKLRKA+GT R R+GC+LIVDNG +H+ WVTLIAPSKYP +NEDTAFSR LESVRKDVECFFGILK
Sbjct: 95 VFRGRFRVPYPFFQNLVKLSRAKRWFSPGEKDTANREGIPLELKLRTSTPVEDEQVDGTSNHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILK 452
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 300 bits (768), Expect = 1.680e-96 Identity = 157/289 (54.33%), Postives = 181/289 (62.63%), Query Frame = 1
Query: 1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTG-TYQAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYK----------------------------DCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
K R FRVP+ FL LV L K K WFS DAVG + P E KVL L ILGRGNCF I Q+S MS FH FC+HFA+EM++E I+LPT + + D VM YD+LG TGA+GS DVTHI W CP+ RSYTGKEGFPTIAYQVTVDHAGR IA+T GFTGSTNDKTI+ +D V I T+ Y + T+ + DGT KGCYL+VDNGYH+W LI PSKYP + D FS+ LESVRKDVECFFGILK
Sbjct: 41 KQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILK 329 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig110.1443.1 >prot_C-linearis_contig110.1443.1 ID=prot_C-linearis_contig110.1443.1|Name=mRNA_C-linearis_contig110.1443.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=202bp MSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIback to top mRNA from alignment at C-linearis_contig110:109835..112019- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig110.1443.1 ID=mRNA_C-linearis_contig110.1443.1|Name=mRNA_C-linearis_contig110.1443.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2185bp|location=Sequence derived from alignment at C-linearis_contig110:109835..112019- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig110:109835..112019- >mRNA_C-linearis_contig110.1443.1 ID=mRNA_C-linearis_contig110.1443.1|Name=mRNA_C-linearis_contig110.1443.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at C-linearis_contig110:109835..112019- (Chordaria linearis ClinC8C monoicous)back to top |