mRNA_C-linearis_contig110.1443.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1443.1
Unique NamemRNA_C-linearis_contig110.1443.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 1.920e-120
Identity = 177/259 (68.34%), Postives = 203/259 (78.38%), Query Frame = 1
Query:    1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
            KVFR RFRVP+PFF ELVKL++ K+WFS G KDA  R GIP ELKVL      G+GNCFDD+ QLS MS+S+A A FH FC+H A EMF+EHIYLPTGTY  +VM ++ +LG TGA GSTDVTHIG  MCPFTLGRS+TGKEGFPTIAY+VTVDHAGR +A+T GF G TNDKT IRYD+GVN I+TE QY +  YKLRK +GT R R+GC+LIVDNGY+E            +NEDTAFSR LESVRKDVECFFGILK
Sbjct:   94 KVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILK 334          
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 1.110e-118
Identity = 193/340 (56.76%), Postives = 208/340 (61.18%), Query Frame = 1
Query:    1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELK--------------------------------------------------------------------------------------------------------------VLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSK 690
            KVFRTRFRVPH FFLELVK+A+GKKWFS   KDAVGR GIP ELK                                                                                                              +LTALQILGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTIIRYDAGV+ IKT+ QY   TYKLR+ADGTFRERKGCY IVDNGYHE  +L  P++
Sbjct:   96 KVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLLLVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVTRTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNR 435          
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 3.840e-116
Identity = 164/257 (63.81%), Postives = 197/257 (76.65%), Query Frame = 1
Query:    7 FRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
            FR  FR+P+PFF+ELV L K + WF  G +DA GR GIP +LKVL  LQIL RGNCF DI  +S +S   AAATFH F ++FA+EM+ EHI+LPTG YQ  VM  YD+LG +GA GSTDVTHI WGMCP+   RSYTGKEG+PT+AYQVTVDH  RV+A+T GFTGSTNDK+IIRYD  V  I+ +  Y +  + + +ADGT  + KGCYL+VDNGYH+WVTLI PSKYP +  D AFS+ LESVRKDVECFFGI+K
Sbjct:  116 FRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVK 372          
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 6.580e-111
Identity = 156/204 (76.47%), Postives = 175/204 (85.78%), Query Frame = 1
Query:  151 QILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECF 762
            Q+LG+GNCFDD+ QLS MSKSMA  TFH FC+HFA EMF+EHIYLPTGTY  +VM ++ +LG TGA GSTDVTHIGW MCPFTLGRS+TGKEGFPTIAY VTVDH GR +A+T GFTG+TNDKTIIRYD+GVN I+T  QY +  YKLRKA+GT R R+GC+LIVDNGYHEWVTLIAPSKYP  NEDTAFSR LESVRKDV CF
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF 245          
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 3.420e-107
Identity = 153/257 (59.53%), Postives = 186/257 (72.37%), Query Frame = 1
Query:    7 FRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
            FR  FRVP+PFF+ LV+L + + WF  G  D  GR  +P ELKVL  LQIL RGN F DI  +S +S    A+TFH FCK+FA E+++E++YLPTG     VM  YD++G  GA+GSTDVTHI WGMCP+   R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD  V  I+T+  Y +  YKL   DG   E KGCYL+VDNGYH+W TLI PSK P +  D  FS+ LES RKDVEC+FGILK
Sbjct:  132 FRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILK 388          
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 1.620e-103
Identity = 159/261 (60.92%), Postives = 185/261 (70.88%), Query Frame = 1
Query:    1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
            K FR  FRVP+PFFL LV+L K K WF+   +DA GR   P E KVL  L ILGRGN F  I  LS MS       FH FC+HFA EM++EHI+LP+    + D VM  Y+KLG  GA+GSTDVTHIGW  CP+  GRSYTGKEG PT+ YQVTV+HAGRV+A+T GFTGSTNDKTII  D  V+ I+T+ QY +  + + K DGT    KGCYLIVDNGYH+W  LI PSKYP +  D  FS+ LESVRKDVECFFGILK
Sbjct:   83 KKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILK 343          
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 2.470e-103
Identity = 155/261 (59.39%), Postives = 182/261 (69.73%), Query Frame = 1
Query:    1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
            K FR  FRVP  FFL LV L K K WF+  G DA  R   P E KVL  L ILGRGNCF  I Q+S MS       FH FCKHFA+EM++EHIYLP+    + D VM  YD+LG +GA+GS DVTHIGW  CP+ L RSYTGKEG PT+ YQVTV+HAGR IA+T GFT STNDKT + +DA V  I+T+ QY + T+ +   DGT    KGCYL+VDNGYH+W  L+ P+KYP +  D  FS+ LESVRKDVECFFGILK
Sbjct:   54 KQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILK 314          
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.230e-99
Identity = 143/166 (86.14%), Postives = 155/166 (93.37%), Query Frame = 1
Query:  133 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKG 630
            +VLTALQILGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTI+RYDAGV+ IKT+ QY   TYKLR+ADGT+RERKG
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKG 168          
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 1.740e-98
Identity = 177/358 (49.44%), Postives = 210/358 (58.66%), Query Frame = 1
Query:    4 VFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTAL-----QILGRGN----------CFDDILQL---------------------------SLMSKSMAAATF---------------------------------HNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNG----------YHE---------------WVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
            VFR RFRVP+PFF  LVKL++ K+WFS G KD   R GIP ELK+ T+      Q+ G  N           FD+ + L                           + +  +M   T                                  H FC+HFA EMF+EHIYL TGTY  +VM ++ +LG TGA GST+VTHIGW MCPFTLGRS+TGKEGFPTIA +VTVDHAGR +A+T GFTG+TNDKTIIRYD+GVN I+TE QY +  YKLRKA+GT R R+GC+LIVDNG          +H+               WVTLIAPSKYP +NEDTAFSR LESVRKDVECFFGILK
Sbjct:   95 VFRGRFRVPYPFFQNLVKLSRAKRWFSPGEKDTANREGIPLELKLRTSTPVEDEQVDGTSNHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILK 452          
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 1.680e-96
Identity = 157/289 (54.33%), Postives = 181/289 (62.63%), Query Frame = 1
Query:    1 KVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTG-TYQAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYK----------------------------DCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILK 777
            K  R  FRVP+  FL LV L K K WFS    DAVG +  P E KVL  L ILGRGNCF  I Q+S MS       FH FC+HFA+EM++E I+LPT  + + D VM  YD+LG TGA+GS DVTHI W  CP+   RSYTGKEGFPTIAYQVTVDHAGR IA+T GFTGSTNDKTI+ +D  V  I T+  Y                             + T+ +   DGT    KGCYL+VDNGYH+W  LI PSKYP +  D  FS+ LESVRKDVECFFGILK
Sbjct:   41 KQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILK 329          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSI7_9PHAE1.920e-12068.34DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JCU6_9PHAE1.110e-11856.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE3.840e-11663.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE6.580e-11176.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE3.420e-10759.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.620e-10360.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE2.470e-10359.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE1.230e-9986.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE1.740e-9849.44DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNX4_9PHAE1.680e-9654.33DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:109835..112019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.8
Seed ortholog evalue2.3e-57
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size892
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1443.1prot_C-linearis_contig110.1443.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 109920..110962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.1043863-UTR-C-linearis_contig110:109834..1099191622927474.1043863-UTR-C-linearis_contig110:109834..109919Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 109835..109919 -
1690879722.1920724-UTR-C-linearis_contig110:109834..1099191690879722.1920724-UTR-C-linearis_contig110:109834..109919Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 109835..109919 -
1622927474.2364807-UTR-C-linearis_contig110:110962..1110281622927474.2364807-UTR-C-linearis_contig110:110962..111028Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 110963..111028 -
1690879722.2370918-UTR-C-linearis_contig110:110962..1110281690879722.2370918-UTR-C-linearis_contig110:110962..111028Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 110963..111028 -
1622927474.282757-UTR-C-linearis_contig110:111884..1120191622927474.282757-UTR-C-linearis_contig110:111884..112019Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 111885..112019 -
1690879722.2475424-UTR-C-linearis_contig110:111884..1120191690879722.2475424-UTR-C-linearis_contig110:111884..112019Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 111885..112019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.1144104-CDS-C-linearis_contig110:109919..1100631622927474.1144104-CDS-C-linearis_contig110:109919..110063Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 109920..110063 -
1690879722.2063177-CDS-C-linearis_contig110:109919..1100631690879722.2063177-CDS-C-linearis_contig110:109919..110063Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 109920..110063 -
1622927474.1246042-CDS-C-linearis_contig110:110500..1109621622927474.1246042-CDS-C-linearis_contig110:110500..110962Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 110501..110962 -
1690879722.2183812-CDS-C-linearis_contig110:110500..1109621690879722.2183812-CDS-C-linearis_contig110:110500..110962Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 110501..110962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1443.1

>prot_C-linearis_contig110.1443.1 ID=prot_C-linearis_contig110.1443.1|Name=mRNA_C-linearis_contig110.1443.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=202bp
MSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAI
GSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFT
GSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDN
GYHEWVTLIAPSKYPANNEDTAFSRTLESVRKDVECFFGILKDVSESSSS
V*
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mRNA from alignment at C-linearis_contig110:109835..112019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1443.1 ID=mRNA_C-linearis_contig110.1443.1|Name=mRNA_C-linearis_contig110.1443.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2185bp|location=Sequence derived from alignment at C-linearis_contig110:109835..112019- (Chordaria linearis ClinC8C monoicous)
AAGGTCTTCCGCACTCGCTTTCGCGTACCTCACCCCTTCTTTCTGGAGCT GGTCAAGTTGGCCAAGGGGAAGAAGTGGTTCTCTGAGGGAGGAAAGGATG CTGTCGGGCGCTCCGGGATACCGACTGAACTCAAGGTGAGCTACACGGCT GCTGCTGAATGGCCGCAGTCCTCCTGTGTAAACTACAATGTGCAATATTT GTTGGTGATGACCACCACAAACAGGCTGCTCCGTTCTCCAGACACATGAG AAGTTCTTGCCCTCCGTTGCCACCCGACGTCTCTGCTATTCCCCAAGCAA ACCCTTTGTTGAACTGTGATCCAAAGCACCGACGACTCTCTTTCTCCTGG CCATTCTGGCTCTATCGCACAAGAACTGCGAGATACGTTTGGTGTGGTGT ACGCTCGTGTTCCAATGCGGTCGTGTGCGATGTCTCCGCCTGGATAGACT ACATGCGAAGCACAGCAAGAACACAAGCGTTGCCTCTGCTGCATTACTCT GAGTCTGGTACAACACAGAGGCTGGTAGATTAAGAGTGCTTTGCCGAACA CTCAGCCAGTTCGTCAGACCGTAGTTTTTGATTTGTATTCACAGCAGCAG GCTGACCTGGAAGCAGCACTGTAATCCGTTAGCAAGGCGGCAGGTGCCTT ACACCCCACGCGCAGGTCGCATCGCTGCGAAGCAAGACTCTTGCAGTAAA ATCGCACATCGTTGGGATAGACACGTCGGGACTACAAGTAGCCGCCAAAG TTGTGCTTTCTGGTTCTGCTACAAATGTGACACACTATTGAATGCACCAG CCCGGTGCTCGGCAAACCACGCCCTCCCTGTCAACTGCGGAGTGTAGTTA TTATATAAACATCGCTGACCACGTTTTAATGTGGCCGATGCTATAGATCG TGACGCCGACTCTGCTTAAACAACGATTAATTTAGTACACCGTGGCCAAT GGTTCCTTTCGCACATGCCTTCTCCCCACACTCTCCTGCAGGTATTGACG GCCCTCCAGATACTGGGCAGGGGCAACTGCTTCGACGACATCTTGCAGCT GTCGCTGATGAGCAAGTCCATGGCAGCCGCTACGTTCCACAACTTCTGCA AGCATTTTGCGCAGGAAATGTTCGAGGAGCACATCTACCTCCCTACCGGA ACGTACCAGGCGGACGTCATGAACATGTACGACAAGCTCGGCATGACGGG GGCCATCGGATCTACCGACGTGACCCACATCGGGTGGGGCATGTGCCCTT TCACCCTTGGCCGTTCTTACACGGGCAAGGAAGGATTCCCGACCATCGCC TACCAAGTGACAGTCGACCACGCAGGCCGAGTCATCGCGCTCACCGCCGG TTTCACCGGCTCGACCAATGACAAGACCATCATCCGCTACGACGCCGGTG TGAACGCCATCAAGACGGAAGGCCAGTACAAGGACTGCACGTACAAGCTC CGGAAGGCGGATGGGACTTTCCGTGAGCGCAAGGGGTGCTACCTGATCGT CGACAACGGGTACCACGAGGTAAATGCAGTTGGGCGCCCTTCGAGAAAGA GAGAGGCGATAGCCACGACGTTGAACATTTGAGGTACAGCAGTAACCGTA AACATACCCCATAACGTAACCCCAAGTGTTATCTCTGTCGACGGTTATTG AAAAAGCTGGGTCGGTGCGTCGGGCGCGCGGTAGAACTCTTTGCTGGCGT GTGTTCGGTACGTTTGTTCAACGTTTGGATGCAGATATGTAGCAAGTGTT CACAGGAAGCCACTGGTCGGCCATAGATTAGGCGGAAAGCTCGTAGCCAA TGGCGACCTCCTCCGGGTGCGAGGTTGCGGTTGGATAATGTTATATCCGT GTGATTTTATTTTGTCAACCAAAGTCCGGAGCACGCAAGACCCGCCCTCT ATTTACCCCCCACCATGTCGTTCGAAACCTCAACCGCTTTTTGCCCTCCC AAACAGTGGGTGACCCTCATTGCTCCCTCCAAGTACCCGGCGAACAACGA GGACACCGCTTTCTCCAGGACGCTCGAGAGCGTGCGCAAGGATGTCGAGT GCTTCTTCGGTATCTTGAAGGACGTTTCAGAATCCTCAAGCTCCGTCTAG GGTACCACTCGAAAAAGATATCGACAACATCTTCTTCACTTGCTGCATCC TGCACAACATGCTTCACACCTTCGACGGCATGGAC
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Coding sequence (CDS) from alignment at C-linearis_contig110:109835..112019-

>mRNA_C-linearis_contig110.1443.1 ID=mRNA_C-linearis_contig110.1443.1|Name=mRNA_C-linearis_contig110.1443.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at C-linearis_contig110:109835..112019- (Chordaria linearis ClinC8C monoicous)
ATGAGCAAGTCCATGGCAGCCGCTACGTTCCACAACTTCTGCAAGCATTT
TGCGCAGGAAATGTTCGAGGAGCACATCTACCTCCCTACCGGAACGTACC
AGGCGGACGTCATGAACATGTACGACAAGCTCGGCATGACGGGGGCCATC
GGATCTACCGACGTGACCCACATCGGGTGGGGCATGTGCCCTTTCACCCT
TGGCCGTTCTTACACGGGCAAGGAAGGATTCCCGACCATCGCCTACCAAG
TGACAGTCGACCACGCAGGCCGAGTCATCGCGCTCACCGCCGGTTTCACC
GGCTCGACCAATGACAAGACCATCATCCGCTACGACGCCGGTGTGAACGC
CATCAAGACGGAAGGCCAGTACAAGGACTGCACGTACAAGCTCCGGAAGG
CGGATGGGACTTTCCGTGAGCGCAAGGGGTGCTACCTGATCGTCGACAAC
GGGTACCACGAGATGAGCAAGTCCATGGCAGCCGCTACGTTCCACAACTT
CTGCAAGCATTTTGCGCAGGAAATGTTCGAGGAGCACATCTACCTCCCTA
CCGGAACGTACCAGGCGGACGTCATGAACATGTACGACAAGCTCGGCATG
ACGGGGGCCATCGGATCTACCGACGTGACCCACATCGGGTGGGGCATGTG
CCCTTTCACCCTTGGCCGTTCTTACACGGGCAAGGAAGGATTCCCGACCA
TCGCCTACCAAGTGACAGTCGACCACGCAGGCCGAGTCATCGCGCTCACC
GCCGGTTTCACCGGCTCGACCAATGACAAGACCATCATCCGCTACGACGC
CGGTGTGAACGCCATCAAGACGGAAGGCCAGTACAAGGACTGCACGTACA
AGCTCCGGAAGGCGGATGGGACTTTCCGTGAGCGCAAGGGGTGCTACCTG
ATCGTCGACAACGGGTACCACGAGTGGGTGACCCTCATTGCTCCCTCCAA
GTACCCGGCGAACAACGAGGACACCGCTTTCTCCAGGACGCTCGAGAGCG
TGCGCAAGGATGTCGAGTGCTTCTTCGGTATCTTGAAGGACGTTTCAGAA
TCCTCAAGCTCCGTCTAGTGGGTGACCCTCATTGCTCCCTCCAAGTACCC
GGCGAACAACGAGGACACCGCTTTCTCCAGGACGCTCGAGAGCGTGCGCA
AGGATGTCGAGTGCTTCTTCGGTATCTTGAAGGACGTTTCAGAATCCTCA
AGCTCCGTCTAG
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