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Homology
BLAST of mRNA_C-linearis_contig11.1421.1 vs. uniprot
Match: D8LKG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG3_ECTSI) HSP 1 Score: 154 bits (388), Expect = 8.850e-45 Identity = 70/100 (70.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query: 33 MPEFHFMESDWGIHAKRGGTICTASAVVGTIIGFIWLHWIGATLSLCVALVLATFEVPFIYKYVEPCRRLQDIMNETLKFSMPAVRGVLYLALAVVCFTA 332
MPEFHFMESDWGIHAKRGG+ICTA+++ T++GFI+ W GA LSL + L+LATFEVPF+YK EPCRRL+ I+N+TLKFS+PAVR VLYL LA+V FT+
Sbjct: 1 MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTS 100
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | TVP18/Calcium channel flower |
| Ec32 ortholog | Ec-16_002860.1 |
| Exons | 3 |
| Model size | 533 |
| Cds size | 501 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927472.0213516-UTR-C-linearis_contig11:3674816..3674848 | 1622927472.0213516-UTR-C-linearis_contig11:3674816..3674848 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 3674817..3674848 + |
| 1690879720.8639636-UTR-C-linearis_contig11:3674816..3674848 | 1690879720.8639636-UTR-C-linearis_contig11:3674816..3674848 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 3674817..3674848 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927472.0379212-CDS-C-linearis_contig11:3674848..3674869 | 1622927472.0379212-CDS-C-linearis_contig11:3674848..3674869 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3674849..3674869 + |
| 1690879720.8734148-CDS-C-linearis_contig11:3674848..3674869 | 1690879720.8734148-CDS-C-linearis_contig11:3674848..3674869 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3674849..3674869 + |
| 1622927472.0475883-CDS-C-linearis_contig11:3680893..3681067 | 1622927472.0475883-CDS-C-linearis_contig11:3680893..3681067 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3680894..3681067 + |
| 1690879720.8830001-CDS-C-linearis_contig11:3680893..3681067 | 1690879720.8830001-CDS-C-linearis_contig11:3680893..3681067 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3680894..3681067 + |
| 1622927472.0570219-CDS-C-linearis_contig11:3681836..3682142 | 1622927472.0570219-CDS-C-linearis_contig11:3681836..3682142 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3681837..3682142 + |
| 1690879720.895151-CDS-C-linearis_contig11:3681836..3682142 | 1690879720.895151-CDS-C-linearis_contig11:3681836..3682142 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3681837..3682142 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1421.1 >prot_C-linearis_contig11.1421.1 ID=prot_C-linearis_contig11.1421.1|Name=mRNA_C-linearis_contig11.1421.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=167bp
MPEFHFMESDWGIHAKRGGTICTASAVVGTIIGFIWLHWIGATLSLCVAL VLATFEVPFIYKYVEPCRRLQDIMNETLKFSMPAVRGVLYLALAVVCFTA GWWINVSLVGWLLQCCTFPSRGLFLGGPSFLLSFPRRAPFPPLSGLHFAA PPYGVLFFNGCRCCHFD back to topmRNA from alignment at C-linearis_contig11:3674817..3682142+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig11.1421.1 ID=mRNA_C-linearis_contig11.1421.1|Name=mRNA_C-linearis_contig11.1421.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7326bp|location=Sequence derived from alignment at C-linearis_contig11:3674817..3682142+ (Chordaria linearis ClinC8C monoicous) GTGCATTCCGAGGGGAGCATAGTAAAGCAAGCATGCCGGAGTTTCACTTC
ATGGTGAGTGCGATGGCTTGGCGTGCGGTTGTTACCCAGCGTGTGTGTTG
CTTTTTCAGAATATGCTGTTTTGGGCACGGAAGGAGACGCTGTTGGGGTA
TCGTACAGCAGTAGCAACGACAGCTTGTGTCTTGGCAAAGCAGTTCCTGA
GCCACGAGACAACCAGCTCTCGCCGTGTGTATACGCCAAAAGTTTCGCAT
AACGGATGTGCCACCGAAGATGCGGTTGATCAGGGTAGAAAGGTCGGCCA
TCGGTGTTTCCGAGCCTTCGACCAGCTCTCCATCCTGTTGAGGATACAGC
GTGCAGTCTCTCAGCCCTTTCTCCTGTTGCAAGCACGCGAAATCCCAACT
ACCAGCAGGGAGGCCAGATTGCTGCTTCTTGAGACGAGGGGTGCCTTTCG
CCTCTCCTCGAAAAACCCCAATACGCAATGTTTACACCCAATGTTTACAC
CCAACTCGACTTGAAAAACTCAACGAAACCCAGCCGCAGACTATCATCTT
TTGCGTGACCGGTACAATTGCCGTTTCCTTTTCTCCCTCCCTTTTGCGTG
GCATCTGCAGGCGTGGCAGCATCTTTGTAGCATACCCTTGCTCTGCTGTG
TCAACCATCATGCTACTCTTAGTTCGCCCCGTTCTTATCGAGCGAAAAAA
ATTCACGGATTCGTGAAAAGGAACTTCACGGATTCGTGAAAAATTCCGCC
GCGTTCTTATCGCATATCCCCTCTGGCCCTCTGCTATTGCGACTACCCTC
TCGTCTACAAGCCTCACCGAAGGACTTAAGCAACAGGTTGCACACTATAT
AGTACGATATGCTAGCTGTTCCCGATAGAAGGAATGATCCTCTGGCATGC
CCTATGAGAGGTGATATCGTGAAGTTGATCATCGTGTTGGACTTTCGATC
GCTTTGGCGGGCACAGAGCAACTCATCCCACAACAACAGCAAAACCATCG
ACATTTCGTGACATTTTTTTACTCGTATAAGACCGGTGATTATGGGAAAA
AAATCTTAAAAAATATGTCGAGGGTTTGGCCCAAGATTTTGCTGCGAACA
TTCGGCTATCGAAGATAATGTGCCGCCACTATGGGGAAAAATCTGGTTTT
GATCGAATAATCGCAACGCGGTGGAAATTGAGCTTTTCAAGCCCCAACGG
CCAAAAATTCGCCTCGCGAGAGACGACACCACAATGCGGTCTGGCTCTCG
CCCGCTAGACTACGTTTTCAAGTTCCAACTTCTTGGCTACCATCTCCACC
AACGTATCTCGTCCGGGTAGGCATGACTTGGCAGTGGGCGTCTGCGATCG
GCAGCAAATCGCATCGCTGGGTACTGAAAAATGGAAAACGTGCAAAATTC
GGTCTTTTTGTTTTACTTGACCACAGACTACTTGTTGACCCGCCAAAAAA
ACAGAACACACAGCGCACTCGTGCACACGGCGATTCACTTTACTGCCGAT
CTAAGTGCGCCACTGCCGAGCCATGCCCACTCGGGTGATATACGTTTGTG
GAGGTGGCAGCCAAGAAGTTGGAACTTGAAAACGTAGTCTATTGATAGCG
GGCGAGAGCTAGACCGCGTTGTGGTGTGCTGTCCTCGCAACCGGCGAATT
TTTTGCTGCTCGAAAGCGGAAACCAGCTGTCTGCGCGCGTTCGTGAAACA
CCCTTGCCCAAATATTTTTTTTTCGCGCAACCGACGAGCTCCTGCCCCAA
AACAACAGCTAATCTGTTGACACGAAGACTCTAGGGTTGTCCGTAGGTGT
TTACGGGCTCGTCACGTTCAGTATTCTGGGCGCAGGAGGCGGTTGTGAGT
ACGCGAGTCAGCGAGCCAAAAAATCCCGCCGCCTCCGGGCAAGATTTTGA
TGAACTTCCAGCTGACCGAATGTTCGGCTAACATTTGGACATCTGGCAAG
ATTTTGGCCGGAATTGAAATCTTGGGCAAGATTTTGTCGAACATTTTCTC
CCATAGGAAGCGGACAAAAATATCTTGGCCAAACTTTCAACATTTTGTTG
AAGATTTTTATCCCATAATCACCGGTCTAAATTAACCCGACATCACACCA
CTGGTTATGGAAAAAAAATATCAATTTTGATTTTTCCAAATCTTGCCGAG
ATTTATCTACCCTACTCAAAGATGAAGATTTGTACATGATGTATATGCAT
ACGTGTGTATGGAAAACAGCATCTTAGTTAATCTCGATAGGGTGTCGGGG
GCATACAATGCACTTTCGGTCGACACAATCAGCGAGTGCGACCTGCGTTC
TTAACGTATCGCTCTCCTCAAGGGCTCCAAGCAACCCTAGGCTTAAGGTC
TAGCTATTGTACACGCTGGTTGGTGATGATTGCTTGCAAGGCTAGCGTGA
AAAAACATTTCGCACCAAACCAAAAACGAACGAGTCAAACCGCCCCCAGA
GAGCAAAAATGGCAGCCTTTTGGCGGAGACAGGAGGACACCGCATTCGAT
TTCTCGCTCGCTAGAGCACGGATCGCCGTAGAATCAGGCAGGATGTCACC
TCTGTTCCCTATCATTCTTCGGTGGAAGGTGGCTCAGAAGGTTGTTCATG
CATTCGACAGAGAGAAGCATGTGCGTGCACACAAGCTGTCTGCTGAAATC
GATTTTCCGCCCTTCAACAAACCAGTCTATTTTCAAGTGAGAAAAAACAG
GATTATTTTCATTTCGAAAATGCAACTTACACCACGCGCGACCCTTCTAT
GTGTCGAATGCGTGAATAACCTGCTAAGCCACCGTCCACCGAAGAATGAT
AGGGAACAGAGGTGACATCCTGCCTGATTCTACGGCGATCCGCGCTCTAG
CGAGCGAGAAATCGAATGCGGTGTCTTCCTGTCTCCGCCAAAAGGCTGCC
ATTTTTGCTCTCTGGGGGCGGTTTGACTCGTTCGTTTTTGGTATGGTGCG
AAATGTTTTTTTCACGCTAGCCTTGCAAGCAATAATCACCAACCAGCGTG
TACAATAGCTAGACCTTAAGCCTAGGTTTGTTCGGAGCCCTTGAGGAGAG
TGGTATGTTAAGAACTCAGGTCGCACTCGCTGATTGTATCGATTGGGCCT
CGTCGCACCCCCCCCCCGCCAAACGAGATTTGACAAGGCCTGCTGTCTCC
CCGATCTTGGCCGAATATTGGGGAGAAAGGGGGTGCTTTGTTGTCATTTC
CAAGATTTGGCCCCATAAGGAGCGTACATCAAAATATTGTTCTTGGTTCG
ACCCCCCCCCCCCCCATCAAAAATCAAAATTTAGATTGAGATTAGACATA
CTCCGGAGTAAAAATAGTCCTTGTTGTGAATCTTAGTTTTCTCCCCCCCC
CACCCAGAAGAAAATACCTGCAGTAGGCTGAACTGAACCACACACAACAC
AACACAACAACACAACACACAGGTCCGCAGAGGGAGAGAATAGGTCGCTA
TCCATCACACCGCTCCGCCCAGCGCCGGCGCCCGGGAATCTAGGAATCTA
CCCTCGCACACACAGGGTCCGCAGATAGATGTTTAGAGAAATGGCGGGGG
GCGTGGACACAACCAACACAAAGCACCGAACCCCCGTCGCCACGACTTCC
TCCGGGCGAGGCTGCGCAGTGTGTGACGGCGACCCACGAAGTAGGCCGCC
CACACAACGCACACATGGCATGCACACGTAGAACCGTCTGCTGTGCGTGT
TTTTGTTGCCTGGAAGGGGAGTTTGAGCGAGTTGCGGAATTTATGCGGAG
TTCTGAACACGCACACACCGAAGGCTCGCGCTAGCTCGGCGCTACGGTCA
TCGATCGCGACACTGATTGCTGGAGGCGACTCCAGTGACCTAAATGATGG
CCTCTGTCGCGGTAGTTTGGAATTTGGCAGCGCCGAACGTGCCAAAGTCG
GGCAGGGCAACGCTAAATACACCACAAGCACCGAGCCAACGCCGCCGACT
GTAGACGATATCGAAAATCGACAGGTGCACATGTTGTCTTAGCATCAAAG
TAAAAGCTTTCCTATGCACTCTTCGTTTTCGCGATTGGTGGTCTGTAGCG
TTTGTTTGGGCGAAAACATCGGTCACGCACGAACGAACGAACGAACGAAC
GAACGAACGAACAGACACGTATTGGGCAAAATAGCCCCCCCAGCAAGTTC
TGGGGCCTCGTGTATCGTACATGCAGGGAGGTGTCGATAGAAAACTTTTT
TTTTTCCCTCAAAGAAAACTATATAAAACTCAAAATATAGGTCGGATGAA
CTTTTGGGTCCAGATTCGCCATTTATGTAAATTCGGGCTCCCTGCCACCA
CGATATAAAACTCGATATTCAGGTAAATCTTGGTTCTTGAGGCTAAAACC
ATGGGACTGTCGTCAGCTCGAGGGCAGGAGAAAAAAGAGTCTCGTTTGTG
GGGAGGAGGTTCTGTCTTTGATTTCTTGATTGTTAAAAGATGCGAGGGCG
GGAGAAGCTGTACGTTGGAGAGGAATAATGCAGTTCGCGACTGGCTGCTG
TGGGTTATGAGGCATGGCGATAGCTGACCCCTGCCCGAACTGCGGACTGC
TGTTGTTCACGGGGAGTGTTCGAGGGGGGAGCAATATTCCATTCCGCCAA
TTCCTCGGGAGAGAGCGGTTGTTGTGCCTGAGACGGCTGCTGCCAAACAC
TCTCCTCGCCGCAATCACTGGTCTGCGTATCGCACGACCCCCACCGGATC
GGCGCTGAAAAGTAAGTATTTGGCTCAACTTAGCTTTTGCTGCCGCATCC
GGACTGCTGTGCGGATTTTGCGCGGTGGAGAGAAGTGTGGGTATGCCATC
CGTTCCCAGTCTGCGTGTGGAATTTTTTTGAGGTAAATTTTCCGCAAAAT
ATAGGTAAATTTTTCTTCCCCCAGGCTCTGATATAAAGCTCGATTTTATG
TAAAATTTGGATCTTCCGCCGAATTTAGGTAATTTTTCGAGTTTTATGCT
CCGTATATGTCTATTGTGTTGCCATAACCATCGGTGTCACAGAAAGAACC
TCCCCTCAAAGAGACAAATCCCTAAGTGATGGATTAACAGTTCAATACAG
TGACGTATAGGTGGAGAAGAAAAACACCTAAAACTTGGAAAACGTCATAA
ACCTCCCCTGCAACGCTCTGCCGGGTCAACAGCAAATATATCGGGGAGAA
ACCCACCGTAAAGCTGTGGTATTATAACCAATTTCTCGGAGATAGGAACA
CATCGCAGGGGTTGACATCGTCAAGTTGCTAGTTCAGTGATAAGAGCTGC
TGTGGTGAACTATTGGTGAGTGAACGAGACTTCTCGTGAACGGAGACTGC
CAGAGACTTTTCAAGGGCAAGGGGGTGGTATCTAACGTCATTGGATACAG
GTGGTAAAAAAGACATTTCTTTGAGAAACATTTGGGTTGACCACCTTTCT
ATGTGTGTGAGTAGACACCGAGGAGAGAACGAAAGGTGCAGCCAAGGGAT
AAGGGTTCAGAGAGTGCAAGTGCCCTAGGACAAGTGTAGAGGTCATTTTT
GTCGATAGCGGCCTGTGAATAACCCTCTGAGGGGTTGGGACAAGTTTTGT
ACACTTTTGTGCGTAAGAGCAGCCCTCCTACCGCGTCTGCCCGATCCCTC
CTCTGTTTCCTTGGATTCGTGAATCGAACAGCCGCATTTTTTTCGCCGCC
CTTGTTTTCCTCAGATTCGAGGAAAATATGTTCACGAATTCACGAATCCG
TGAAAAAACGTGTTCGATAAGAATGGCCCTTCTTTTTACTGAGACACGGT
TTCTGCGCCGGCCGCAATCTGGAAAGCGCAGTTTTGGTTTGTTTTTGCGT
TCGGCGTTCCTTCTTGTTAGTGGGTTCAGCAGCTGCTGGACCTTGTAGCT
CACCTGTTGATTATCACAACAAAGCGAGCCGTTCGTCTCTGTTGCTCTTC
CCTCGGGTTTCAGCTAGTATCTCGGTATTTTGTCCGGTAAACGGCAGAAG
CACAAGACCTTCCCCAGTTGTCCTTGCTGAAAAATCGAAAAATCCCTTTT
CGGGCGTCCCCAACCCACCCTTCTTCATGGTGGGTGCACTGCGCTGCTCC
CGTATTTTTGTGTTTTATTGTCCCCAGGAGTCCGACTGGGGGATTCACGC
AAAACGAGGCGGGACCATATGCACCGCATCCGCCGTGGTGGGCACGATCA
TCGGGTTCATCTGGTTGCACTGGATCGGTGCGACCCTTTCGCTTTGCGTG
GCGCTCGTGCTCGCCACCTTCGAAGTGCCATTCATCTACAAATATGTCGA
GGTATGGGCTCGCAGCTGTCGGTGGATTACATACTATAATTCTCCCCCCC
CCCGCGGAACGGCGCAATCCCATCTAAGGCGCCCGCCCATGCGAATCGGG
CGAAGTCGTGTACGAAGGCGTAGAAATGCACGGGCAGGGAGTGTTCGGGA
AGATGGGAACAGCAGCACTTATTGCTTTCACTGGTGACGTCCATGTTGTC
CTCCGGTGGGTCGCAGATAGTATGCCACCCAGACCTCCTATTAAACAACC
AGACAGATGTCCGCGTGTTGACCACAGGCCCACTGTTTGTTTGAATAAGT
GGCTGCATTCTGAATTTTTTCATACTCGTACTCTCCTTACGTCACCGTGC
CTTTCTGGAGGCGTGCCTGGCTGTACGCCCTCAGCCTGCCGCAGGGATCT
TCCTGCGCCCGTCCTTGTTGTTCTAGGCAACGTTTCGTGCAGCACAAACC
AGCAAGGCTCTTCCCCCACTTCTGTTCCTACGTAGCCGTGCCGATCGATG
ACCGTTCGCCCCGTGTGTCGCACGTGTTGTCGTTGATAAGCCGCGGCAAA
AGCGGTCATCGAGCACCCATCTGTTCGCCCTTATTGGTAATAATTCGAAG
TGTCTTTTTCGCCTCCGGTGGTGAAAACACGCGTGATCGTACGATCGAGT
GGCTTTATAAAGGCTGGCGACACAGCGAGTAGTCCCGAATCCCAGCCGAA
TCCCGTCCTCCTCAAACCCGTCCTTTTAATTTTATTCTTCCATTAATCCC
TTCGCCCGTTCGCTGTACAGCCCTGCCGACGTCTGCAGGACATCATGAAC
GAGACCCTCAAGTTCAGCATGCCGGCCGTGCGGGGGGTCTTGTACCTGGC
CCTTGCCGTCGTCTGTTTCACGGCGGGCTGGTGGATCAACGTGAGTTTAG
TTGGTTGGTTGCTGCAGTGCTGTACCTTCCCCTCTCGAGGGTTGTTTCTA
GGCGGTCCCTCGTTTCTTCTCTCCTTCCCCCGCCGCGCCCCCTTTCCGCC
GCTCTCGGGCTTGCATTTTGCAGCCCCCCCGTATGGTGTTTTGTTTTTCA
ATGGGTGTCGGTGTTGCCATTTCGAC back to topCoding sequence (CDS) from alignment at C-linearis_contig11:3674817..3682142+ >mRNA_C-linearis_contig11.1421.1 ID=mRNA_C-linearis_contig11.1421.1|Name=mRNA_C-linearis_contig11.1421.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at C-linearis_contig11:3674817..3682142+ (Chordaria linearis ClinC8C monoicous) ATGCCGGAGTTTCACTTCATGATGCCGGAGTTTCACTTCATGGAGTCCGA CTGGGGGATTCACGCAAAACGAGGCGGGACCATATGCACCGCATCCGCCG TGGTGGGCACGATCATCGGGTTCATCTGGTTGCACTGGATCGGTGCGACC CTTTCGCTTTGCGTGGCGCTCGTGCTCGCCACCTTCGAAGTGCCATTCAT CTACAAATATGTCGAGGAGTCCGACTGGGGGATTCACGCAAAACGAGGCG GGACCATATGCACCGCATCCGCCGTGGTGGGCACGATCATCGGGTTCATC TGGTTGCACTGGATCGGTGCGACCCTTTCGCTTTGCGTGGCGCTCGTGCT CGCCACCTTCGAAGTGCCATTCATCTACAAATATGTCGAGCCCTGCCGAC GTCTGCAGGACATCATGAACGAGACCCTCAAGTTCAGCATGCCGGCCGTG CGGGGGGTCTTGTACCTGGCCCTTGCCGTCGTCTGTTTCACGGCGGGCTG GTGGATCAACGTGAGTTTAGTTGGTTGGTTGCTGCAGTGCTGTACCTTCC CCTCTCGAGGGTTGTTTCTAGGCGGTCCCTCGTTTCTTCTCTCCTTCCCC CGCCGCGCCCCCTTTCCGCCGCTCTCGGGCTTGCATTTTGCAGCCCCCCC GTATGGTGTTTTGTTTTTCAATGGGTGTCGGTGTTGCCATTTCGACCCCT GCCGACGTCTGCAGGACATCATGAACGAGACCCTCAAGTTCAGCATGCCG GCCGTGCGGGGGGTCTTGTACCTGGCCCTTGCCGTCGTCTGTTTCACGGC GGGCTGGTGGATCAACGTGAGTTTAGTTGGTTGGTTGCTGCAGTGCTGTA CCTTCCCCTCTCGAGGGTTGTTTCTAGGCGGTCCCTCGTTTCTTCTCTCC TTCCCCCGCCGCGCCCCCTTTCCGCCGCTCTCGGGCTTGCATTTTGCAGC CCCCCCGTATGGTGTTTTGTTTTTCAATGGGTGTCGGTGTTGCCATTTCG AC back to top
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