prot_C-linearis_contig11.1421.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1421.1
Unique Nameprot_C-linearis_contig11.1421.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length167
Homology
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BLAST of mRNA_C-linearis_contig11.1421.1 vs. uniprot
Match: D8LKG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG3_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 6.160e-45
Identity = 70/100 (70.00%), Postives = 86/100 (86.00%), Query Frame = 0 
Query:    1 MPEFHFMESDWGIHAKRGGTICTASAVVGTIIGFIWLHWIGATLSLCVALVLATFEVPFIYKYVEPCRRLQDIMNETLKFSMPAVRGVLYLALAVVCFTA 100
            MPEFHFMESDWGIHAKRGG+ICTA+++  T++GFI+  W GA LSL + L+LATFEVPF+YK  EPCRRL+ I+N+TLKFS+PAVR VLYL LA+V FT+
Sbjct:    1 MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTS 100
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1421.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKG3_ECTSI6.160e-4570.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..105
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 135..167
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..64
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 106..110
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..42
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..37
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 111..134
NoneNo IPR availableTMHMMTMhelixcoord: 82..104
NoneNo IPR availableTMHMMTMhelixcoord: 138..160
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3674849..3682142 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1421.1mRNA_C-linearis_contig11.1421.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 3674817..3682142 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1421.1 ID=prot_C-linearis_contig11.1421.1|Name=mRNA_C-linearis_contig11.1421.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=167bp
MPEFHFMESDWGIHAKRGGTICTASAVVGTIIGFIWLHWIGATLSLCVAL
VLATFEVPFIYKYVEPCRRLQDIMNETLKFSMPAVRGVLYLALAVVCFTA
GWWINVSLVGWLLQCCTFPSRGLFLGGPSFLLSFPRRAPFPPLSGLHFAA
PPYGVLFFNGCRCCHFD
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