mRNA_C-linearis_contig11.1307.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1307.1
Unique NamemRNA_C-linearis_contig11.1307.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1307.1 vs. uniprot
Match: D7FS42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS42_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 1.850e-97
Identity = 156/228 (68.42%), Postives = 183/228 (80.26%), Query Frame = 2 
Query:  362 MNIDIPCLLRALGVDERENDTGGKVVQGECETIFRLSTKKLQHLG-KGEFLRSYVAVDLALGKLGISFSKETLLRKANNAKEKTYDDNYRRIKNILGARVAPMGGNIANLAVKFSGASADRSLALLRKYQDACRSTVTAEHGDRLVGQYSTPGYHAAAFCVASVEDKFKLDRKAVADTVKLHPKDLDKICIDMVTKCGLSDLEHVAKAFRMEAPGSADRGKEARAARG 1042
            MNIDIP LLRAL VDER + +GG  VQGECETIFRLS KK+     K EFLR YVA+DLALG LGI FSK+ LL KAN +K+K YDD Y+ ++N+LGARVAPMG ++AN+AVKF+GAS +RS+ALL+++QDAC + VT EH +RL G+YST  YHAAAFCVASV+DKFKLDRKAVA  VKL PKDLDKIC DMV KCG S LEH AK FR+E PGS DRG+EA   +G
Sbjct:    1 MNIDIPDLLRALEVDERVDGSGGNTVQGECETIFRLSEKKVPPGRLKKEFLRGYVAIDLALGTLGIPFSKKKLLEKANISKQKAYDDTYQYLRNVLGARVAPMGVSMANIAVKFTGASVERSMALLQRFQDACHAAVTVEHRERLAGRYSTAEYHAAAFCVASVQDKFKLDRKAVAAMVKLQPKDLDKICGDMVAKCGPSGLEHAAKVFRVETPGSGDRGQEAHKGKG 228
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS42_ECTSI1.850e-9768.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2572640..2577397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size1049
Cds size813
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927456.8942575-UTR-C-linearis_contig11:2572639..25728611622927456.8942575-UTR-C-linearis_contig11:2572639..2572861Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2572640..2572861 +
1690879710.9025865-UTR-C-linearis_contig11:2572639..25728611690879710.9025865-UTR-C-linearis_contig11:2572639..2572861Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2572640..2572861 +
1622927456.9040864-UTR-C-linearis_contig11:2573352..25733651622927456.9040864-UTR-C-linearis_contig11:2573352..2573365Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2573353..2573365 +
1690879710.9119046-UTR-C-linearis_contig11:2573352..25733651690879710.9119046-UTR-C-linearis_contig11:2573352..2573365Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2573353..2573365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927456.9135845-CDS-C-linearis_contig11:2573365..25735871622927456.9135845-CDS-C-linearis_contig11:2573365..2573587Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2573366..2573587 +
1690879710.9230943-CDS-C-linearis_contig11:2573365..25735871690879710.9230943-CDS-C-linearis_contig11:2573365..2573587Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2573366..2573587 +
1622927456.9229143-CDS-C-linearis_contig11:2574203..25742891622927456.9229143-CDS-C-linearis_contig11:2574203..2574289Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2574204..2574289 +
1690879710.932284-CDS-C-linearis_contig11:2574203..25742891690879710.932284-CDS-C-linearis_contig11:2574203..2574289Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2574204..2574289 +
1622927456.9342508-CDS-C-linearis_contig11:2575118..25751821622927456.9342508-CDS-C-linearis_contig11:2575118..2575182Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2575119..2575182 +
1690879710.9415112-CDS-C-linearis_contig11:2575118..25751821690879710.9415112-CDS-C-linearis_contig11:2575118..2575182Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2575119..2575182 +
1622927456.947016-CDS-C-linearis_contig11:2575773..25759141622927456.947016-CDS-C-linearis_contig11:2575773..2575914Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2575774..2575914 +
1690879710.957675-CDS-C-linearis_contig11:2575773..25759141690879710.957675-CDS-C-linearis_contig11:2575773..2575914Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2575774..2575914 +
1622927456.961855-CDS-C-linearis_contig11:2576223..25763341622927456.961855-CDS-C-linearis_contig11:2576223..2576334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2576224..2576334 +
1690879710.9692237-CDS-C-linearis_contig11:2576223..25763341690879710.9692237-CDS-C-linearis_contig11:2576223..2576334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2576224..2576334 +
1622927456.973453-CDS-C-linearis_contig11:2576953..25770341622927456.973453-CDS-C-linearis_contig11:2576953..2577034Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2576954..2577034 +
1690879710.9792585-CDS-C-linearis_contig11:2576953..25770341690879710.9792585-CDS-C-linearis_contig11:2576953..2577034Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2576954..2577034 +
1622927456.988394-CDS-C-linearis_contig11:2577289..25773971622927456.988394-CDS-C-linearis_contig11:2577289..2577397Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2577290..2577397 +
1690879710.9883106-CDS-C-linearis_contig11:2577289..25773971690879710.9883106-CDS-C-linearis_contig11:2577289..2577397Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2577290..2577397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1307.1prot_C-linearis_contig11.1307.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2573366..2577397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1307.1

>prot_C-linearis_contig11.1307.1 ID=prot_C-linearis_contig11.1307.1|Name=mRNA_C-linearis_contig11.1307.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=271bp
MNHSVQQKCRGGALHSWTLWFGGSQALSRALSTTPLHDSTHTMNIDIPCL
LRALGVDERENDTGGKVVQGECETIFRLSTKKLQHLGKGEFLRSYVAVDL
ALGKLGISFSKETLLRKANNAKEKTYDDNYRRIKNILGARVAPMGGNIAN
LAVKFSGASADRSLALLRKYQDACRSTVTAEHGDRLVGQYSTPGYHAAAF
CVASVEDKFKLDRKAVADTVKLHPKDLDKICIDMVTKCGLSDLEHVAKAF
RMEAPGSADRGKEARAARGGG
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mRNA from alignment at C-linearis_contig11:2572640..2577397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1307.1 ID=mRNA_C-linearis_contig11.1307.1|Name=mRNA_C-linearis_contig11.1307.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4758bp|location=Sequence derived from alignment at C-linearis_contig11:2572640..2577397+ (Chordaria linearis ClinC8C monoicous)
AAAGTTTTTGCCGCCTCCGCCTTTCACCGCCGCCCTCCCCCTATCTTTTA
TAAATCAAACTACCTTTCTCGCATTTCTCCCTTCGTGGTGATTTAGCTCC
TCAACCCCCTCGTGTCCCTCTTCTCTCGGAAAATCTTCGGGGAATCTTTG
GGGATCTCGTCGGTGCCTAAGTGCAACAGAAGGAGGTCGATTTTGGATTT
TGGAGCCAAGCAAGAACTATATGTAAGTTGCCTGTTCTGTGCACACGTTA
CGCAGGAAACAATTTGACTACTGCAGATTCAACATGCAGCAGACCGCAAG
GGTCGAATTTCGATTTAACGGTTTAACGGATGGATGTCACAGCAGGAACA
CCAGCGTTGATTGACCCATTCGTGCCCGCCGCACAGCAGATAGTGCTAGC
TATCCAAAGTGCAACCAGTCCGCATTCTTTTCCAGTTGCCAATTGTGCTT
CGGGCGCGCTTATTCCATATTTTTCGGTGGCTTCATATGTCCATCCATCA
TTTCATGGGAGACTCACTTCTCATTTTCCTGAGTGACAGGTGCAGGTGTC
GGGCGAATTTGTCCGAAACCAAGGAAAACCAATGGTATATGACTCTTTAA
TTATTCTGCCCTTAATTAAGGAAAACCAGGCCAGAGACCAGAAACGGGTC
GGGGGCACGAGCGAACCTCCGTGGAACCCCTGCTGTTTTTGAAATTGCAA
TTTTGAATCGCAGCAAAAAACAAAAAATGAATCACAGCGTGCAGCAGAAG
TGCAGAGGAGGCGCCTTGCATTCTTGGACACTCTGGTTTGGAGGCTCGCA
GGCTCTCTCGCGCGCGCTCTCTACCACACCGCTACACGATAGCACTCACA
CGATGAACATCGACATACCTTGTCTCTTGCGGGCGCTGGGGGTGGATGAG
AGGGAAAACGACACGGGTGGCAAAGTTGTCCAGGGCGAGTGCGAAACGGT
GAGAGAGGAGATGTACCTGCAGGCGTTTGGGTGTGCTCTCTGGCAAACGT
CGGCTAGATTATATCTATCCCACGCGTACCAGTAGTGTTCTAGGATCCCT
AGGTAGGGCTTGAGTTGATAGACCAACAGCATGCTTCTTGCCGCATCTTG
TGTACAACCCTTCAGCAGAGTTGAATACTTGGTGACCTGCTACGGTAGAT
CTAGACTCTGTACATACATGTAGATAGCATTTTGTGCGCATCCCCCGCCG
TCGCTTCTCTTGCAGCACGTGCACTCTCGAAATGTATCGTCTGGAATGCA
CCGAGGTCATGTAGTAAGGATGTGTTGGACGTTGGACCTTCTGATTCCTG
ATTCAGTTGCCTTTGTGTCGGCTGATGGTGAGATCAACAAACACGAAGCT
CAAACTCCCAACAAATGCTTCTTTGATGCATGCAGCACCTCCTTGGGTCC
GTTGCGTGTCGAAGTCGAGTCGTTACCTGGTAGCCATAACAGCAGCAGCC
AGTCTGCACCCGCTATGAGCGCGGGATGAACACGCTTAAAGGGAGACCAC
AAGTGCGATTTCAGCACTATAGTCCAAACCTCTCCGATGCGTCTGTACGT
CCATGTGAAAGCAGATATTCCGGTTGTCGACCAAGAAGCTGCAGCACTTG
GGAAAGGGAGAGTTTCTGCGGAGCTACGTCGCGGTGGACCTAGCGTTGGG
GTGAGTGATCTACAGCACTACCTGCAGCAGTTAGTGGTGGCTCGAGCAAG
GTTACCCGTGAGCTCCAATTGGTCTGGTGACCCTCTACAAAGGCGGGAGC
TTGTCCACGTCTCGTGAGGTGTAATTTTGTAATTTTGCTCTTCGCAGACT
ACTACTGCTGTAATAGCATCGGTATGGGAAGCCGTTTGGGCGGTTTGGGC
GGCCTGCATGCATGCCTGCATGCCCAGCAGCTGTGAGACGCGATCTCTCA
CACTACGTAACCGCCATCAGCTAGACACGCAGTGCGTCAGCTCCTGCACC
CCGCCCGCCCTACAATCCCTTCTCTCTCGTCGTTGATTCTTGCGTAAGCC
ATACTGCTGTAGGTCGAATGCTTTGGAATGACTTGGCTCTCCACGGAGTA
GGTTGCAAGGATCAAGGATTTATCAGGTTGCGTGGATGAGACCGAGGCCG
AGAGACGATCACGTGGCTTCCGACGCTCTTGACTCATGTGGTCTGGACAT
GGGAGTCAAACAACAACAACAACAACAACAACCGAAGCAGCAACGCTGCC
GCCGATGGGCATCTGTTGCCCTCTTCCACTGCTGTGTGCGCAAGCAACCC
CACCTCAGCTGTGTGGCATGCTATGCAACATCACCACCTCAGCTGTTGTT
TTTGCTATAGCATGCAACATCACAAGGCCTCGTCGTGGTTGCTTTTGGTT
TTGCGCGCTTTTGCGTGCACGTGTATTTTCTGACGGACGCCTTTTTTCTC
ACGGGCTGCTCTGCTTCCTCCCTTGCGTGCACGTCTGTCCCTCGGTGTCT
CTCGATGCGACGGACCGGACGGACCGCAGCAAGCTAGGTATCTCTTTCTC
GAAGGAAACGCTGCTCAGAAAGGCCAACAACGCCAAAGAGAAGGTGTGTG
TGCGCGCGCGCGCGTGTGTATCTCTCTGTGTGTTGTCTGTGTTTGTACCG
CGGCGGTGAGGGGGGGGCCGCGTGGCGTAAGCGCGAAAGTTGGTTCGCTT
TTTTTCTGTTTCTCTCGCCTCCGGCGGTCGAAAATCGTCGGTTGCCTGAA
GAGGGCCACAACGAGAAGCTTGCCTCTGGCCTGCCGCGGGTGGCCCTTTC
GAGTATCATCGCTCTGATCTGCCTGTCCGTGCGGCGAACAAGAACAAGTT
CCTGACGGTGGTTGTTTCGTTTCTTGTCGAGGTAGGGGCACGGGTTGGAA
ATCAGTCTATATCTCGTCGCGACTGATGCGTGCAGGATGCCTTCTCTCCA
TAAACTCCGTCTCGCTCTGCCTGAGTCATCGTGTGCGCGGCAGGCAGGAA
CGCGTTCGCTCGATGAAAACCTGCCTGCCGACGGAGCGAATTTTTCTCTG
GCTATCTTTTGTCCTCCTGACGTATCGATGCACCGGCGACAACCCGACAC
AAAGATATTTGGAACGGATCAACCTCATGCGTAGAACTCGAACCTTGTTT
CGATCCGCGCGGTATGCACCGTCCGCCCATGCAGACGTACGATGACAACT
ACCGACGAATCAAGAACATCTTGGGCGCTCGGGTGGCACCAATGGGAGGG
AACATCGCCAACCTCGCCGTCAAGTTTAGCGGCGCAAGCGCAGACCGGTC
GCTCGCCCTGCTACGAAAGTATCAGGTGCTGCGTGCATTTTGGGTTTTTG
TTTGTTGCGTTGCTTGTTCGGCGTGTGTCCACGAAGCATAAAAGTATGTA
GTAAAACCTTTAAGACCCACGCATTTCAAGTGATTTTTGTGAACACTACA
GCTCCCAGTGATTCGCACCAATACTCGATGTCGTCGCTCCTGCCAGCAGC
ATACTTCGAAACGTGTGGCAGTGTAGCGCCGACCGCAGGTAAACCTTTTT
TTTACAGGTAAGCCGGACAGAATTCCAAACTCTCATGTGTTTCCGTTCGT
CTCTCCTCTGTCCTTTTGTCTTCCCTGCTTTCAGGATGCGTGCCGCTCTA
CAGTTACGGCGGAGCACGGCGACCGGTTGGTGGGACAGTACAGCACGCCA
GGATACCACGCGGCAGCTTTCTGTGTCGCGAGCGTGGAAGACAAGGTGAC
GTGGTTGACATGGTTGGTCTGTGGTTTGTTTTCGCACACAGCAGCAGGCC
GAAGGTTTTCACTTATCGGGGGGGGTTGTACTGGCGGCGGCGGTGGTGGT
AGCGGCGGCGGCGGCGGTGATGGTGGTGGTGCTTGGGTTGTGTCGTTGTT
TCGTTGATGTTGTTGATATTGTTGCTGTTGTTGTTGTTGTTTTTGGTGTC
GTTGGCGTTTTTCTTGACATAGTCCACTCATGGGTGCCAGCAAAGCTACA
GCGGATGAGGGTGCACACATATCTAGAAGGAGTCTTGATCGCCTCACGGT
GGGTAGCCACGGCGGTGGCTTATCTCAATTGGCTCTGTTATCTCAGTTGC
AAAGAGCGGGCCAAAAGTTACTCCCATCTTGTCTACTCGGCGCGGATTCT
TTTTGGGGGCTTCTTCTTCTCCAAACACCCCAACTATGTGGGTAGCGGCC
TAACCCCCCCCGTGTATTGTATATTTACCAACTACAGCAGTTTAATAGTT
GCTCTATCCCTCTCGGTCGCTCCACCTACGCCTCTCCGTCCTGGCGCCAA
CTAACTAACTCTCGCCCCGACCCCTGATCCTTTGACCTGACTTGACTTGA
CTTGGTGCATGCAGTTTAAGTTAGATCGAAAGGCGGTGGCCGACACGGTG
AAGCTTCATCCCAAAGACCTGGACAAGATCTGCATCGACATGGTGGTGAG
CTACTACTTGTAACCTGACTACTGTTAAACGCACAGGACTCACCCTGCCC
CCCGCGCCCACTATTCTCTCTCCCTCTCTCTCTCTCTCTCTTTTTCTTTC
TCTTTCTTTTGTCGACAATTTGCTTGCGTGGAACGTCTTCCGTGGTATGG
TATGTATGCAAAGCCTCGTTTCATCTATTTCGTGACACTTAGCTCCGCAT
GTCTCCCGCCGCCGCTTTTCTTCCACCCACCCACCAAACCACTCACGCAG
ACAAAATGCGGCCTGAGCGATCTCGAGCACGTCGCCAAGGCCTTCCGCAT
GGAAGCACCCGGCTCTGCGGACAGGGGAAAGGAAGCAAGGGCAGCAAGAG
GAGGAGGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:2572640..2577397+

>mRNA_C-linearis_contig11.1307.1 ID=mRNA_C-linearis_contig11.1307.1|Name=mRNA_C-linearis_contig11.1307.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at C-linearis_contig11:2572640..2577397+ (Chordaria linearis ClinC8C monoicous)
ATGAATCACAGCGTGCAGCAGAAGTGCAGAGGAGGCGCCTTGCATTCTTG
GACACTCTGGTTTGGAGGCTCGCAGGCTCTCTCGCGCGCGCTCTCTACCA
CACCGCTACACGATAGCACTCACACGATGAACATCGACATACCTTGTCTC
TTGCGGGCGCTGGGGGTGGATGAGAGGGAAAACGACACGGGTGGCAAAGT
TGTCCAGGGCGAGTGCGAAACGATGAATCACAGCGTGCAGCAGAAGTGCA
GAGGAGGCGCCTTGCATTCTTGGACACTCTGGTTTGGAGGCTCGCAGGCT
CTCTCGCGCGCGCTCTCTACCACACCGCTACACGATAGCACTCACACGAT
GAACATCGACATACCTTGTCTCTTGCGGGCGCTGGGGGTGGATGAGAGGG
AAAACGACACGGGTGGCAAAGTTGTCCAGGGCGAGTGCGAAACGATATTC
CGGTTGTCGACCAAGAAGCTGCAGCACTTGGGAAAGGGAGAGTTTCTGCG
GAGCTACGTCGCGGTGGACCTAGCGTTGGGATATTCCGGTTGTCGACCAA
GAAGCTGCAGCACTTGGGAAAGGGAGAGTTTCTGCGGAGCTACGTCGCGG
TGGACCTAGCGTTGGGCAAGCTAGGTATCTCTTTCTCGAAGGAAACGCTG
CTCAGAAAGGCCAACAACGCCAAAGAGAAGCAAGCTAGGTATCTCTTTCT
CGAAGGAAACGCTGCTCAGAAAGGCCAACAACGCCAAAGAGAAGACGTAC
GATGACAACTACCGACGAATCAAGAACATCTTGGGCGCTCGGGTGGCACC
AATGGGAGGGAACATCGCCAACCTCGCCGTCAAGTTTAGCGGCGCAAGCG
CAGACCGGTCGCTCGCCCTGCTACGAAAGTATCAGACGTACGATGACAAC
TACCGACGAATCAAGAACATCTTGGGCGCTCGGGTGGCACCAATGGGAGG
GAACATCGCCAACCTCGCCGTCAAGTTTAGCGGCGCAAGCGCAGACCGGT
CGCTCGCCCTGCTACGAAAGTATCAGGATGCGTGCCGCTCTACAGTTACG
GCGGAGCACGGCGACCGGTTGGTGGGACAGTACAGCACGCCAGGATACCA
CGCGGCAGCTTTCTGTGTCGCGAGCGTGGAAGACAAGGATGCGTGCCGCT
CTACAGTTACGGCGGAGCACGGCGACCGGTTGGTGGGACAGTACAGCACG
CCAGGATACCACGCGGCAGCTTTCTGTGTCGCGAGCGTGGAAGACAAGTT
TAAGTTAGATCGAAAGGCGGTGGCCGACACGGTGAAGCTTCATCCCAAAG
ACCTGGACAAGATCTGCATCGACATGGTGTTTAAGTTAGATCGAAAGGCG
GTGGCCGACACGGTGAAGCTTCATCCCAAAGACCTGGACAAGATCTGCAT
CGACATGGTGACAAAATGCGGCCTGAGCGATCTCGAGCACGTCGCCAAGG
CCTTCCGCATGGAAGCACCCGGCTCTGCGGACAGGGGAAAGGAAGCAAGG
GCAGCAAGAGGAGGAGGAACAAAATGCGGCCTGAGCGATCTCGAGCACGT
CGCCAAGGCCTTCCGCATGGAAGCACCCGGCTCTGCGGACAGGGGAAAGG
AAGCAAGGGCAGCAAGAGGAGGAGGA
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