mRNA_C-linearis_contig11.1209.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1209.1
Unique NamemRNA_C-linearis_contig11.1209.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 6.290e-28
Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 2 
Query:  947 KALLALLQKGGVVSVQDNVGKTPLHLACCGQRKGIEAVVDTLLRWGADETALDNAGDSPEDLLGKVND--GRGTCSQEVIERVRLLLARAPADRAWRRRGWLAVLRARASRAXXXXXXXXXXAEDSDDAGDGAGESQQVGREDFVGVG 1384
            KA+  LL  G  ++ QD  G TPLH+AC  Q KG+EA VD LLRWGADETAL+NAG +P  LL + ++   R TCS+  I RVR+LLARAPADRAWRRR WL +LR+ A  A           E S+DAGD     +Q G+E  + VG
Sbjct:  320 KAMHTLLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKATTDETGDAHEGSNDAGDKEWREEQRGKEGELVVG 467
[Close]
BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.210e-24
Identity = 63/110 (57.27%), Postives = 74/110 (67.27%), Query Frame = 2 
Query:  959 ALLQKGGVVSVQDNVGKTPLHLACCGQRKGIEAVVDTLLRWGADETALDNAGDSPEDLLG----KVNDGRGTCSQEVIERVRLLLARAPADRAWRRRGWLAVLRARASRA 1276
            AL Q G  V V+ N G TPLH  C  + +G+EA VD LLRWGADET L+  G SP D LG    KV  G     Q+ I+R RLLL+RAPADRAWRRRGWL +LR+R S+A
Sbjct:    3 ALFQHGAQVGVRGNQGYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVI-GHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKA 111
[Close]
BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.540e-23
Identity = 71/131 (54.20%), Postives = 85/131 (64.89%), Query Frame = 2 
Query:  947 KALLALLQKGGVVSVQDNVGKTPLHLACCGQRKGIEAVVDTLLRWGADETALDNAGDSPEDLLGKVND--GRGTCSQEVIERVRLLLARAPADRAWRRRGWLAVLRARASRAXXXXXXXXXXAEDSDDAGD 1333
            KA+  LL  G  ++ QD  G TPLHLAC  Q  G+EA VD LLRWGADETAL+N G +P DLL + ++   R TCS+  IERVRLLLARAPAD+A RRR WL +LR+ A              E S+DAGD
Sbjct:  534 KAMNTLLGHGASLTAQDVDGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSFARTTRATTDETGDAHEGSNDAGD 664
[Close]
BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: A0A6H5J7H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.180e-23
Identity = 81/175 (46.29%), Postives = 106/175 (60.57%), Query Frame = 2 
Query:  983 VSVQDNVGKTPLHLACCGQRKGIEAVVDTLLRWGADETALDNAGDSPEDLLGKVNDGRGT-CSQEVIERVRLLLARAPADRAWRRRGWLAVLRARASRAXXXXXXXXXXAEDSDDAGDG-AGESQQVGREDFVGVGGDVGGQASSGASEVGTEVLDGVGNKVFSGVVVRLVGLRP 1501
            ++VQD  G TPLH AC  Q KG+EA V  LLR GADETA+++A ++P DLLG ++D  G   S+  IERVRLLLARAP +RAW  R WL +LR+ A              EDS+DAGD  +G+ + V RE+    G  V  + + GA EVG E   G G   ++ +V  +VGL P
Sbjct:  102 LTVQDTDGDTPLHRACYWQHKGLEATVGLLLRSGADETAVNSADETPADLLGYLDDDDGKRYSEAEIERVRLLLARAPTNRAWLGRCWLVMLRSCAKTGRASTDETVGADEDSNDAGDRKSGKFKGVRRENGESAGSWVRSRMN-GAGEVGVE--GGAGG--WASIVASVVGLEP 271
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BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 8.080e-23
Identity = 65/146 (44.52%), Postives = 90/146 (61.64%), Query Frame = 2 
Query:  839 DKACSINALIEAGADVEMATVHGDTPLCIPVVEG-SPKALLALLQKGGVVSVQDNVGKTPLHLACCGQRKGIEAVVDTLLRWGADETALDNAGDSPEDLLGKVNDGRGTCSQEVIERVRLLLARAPADRAWRRRGWLAVLRARASR 1273
            ++A +++ L++AGAD++       TPLC+ +  G S +A+  LL++G  VS    + KT LHLAC     G +A+VD LLRWG  E  LD  G++P  LL  V +G  +     +ER  +LLA APADRAWRRR WL +LRAR  R
Sbjct:  280 NQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVS--GPMDKTMLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLS-VAEGSSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRARTER 422
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BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.480e-22
Identity = 69/167 (41.32%), Postives = 101/167 (60.48%), Query Frame = 2 
Query:  845 ACSINALIEAGADVEMAT---VHGDTPLCIPVVEGSPKALLALLQKGGVVSVQDNVGKTPLHLACCGQRKGIEAVVDTLLRWGADETALDNAGDSPEDLL--------GKVNDGRGTCSQEV-------------IERVRLLLARAPADRAWRRRGWLAVLRARASR 1273
            A +++ L++AGADV       +HG TPL + V++ S +A++ALL++GG V+  +  G + LHL C    +G++ +VD LLRWGA ETA++  G +P D+L         +   G G+ ++ V             I+R R+LLARAPADR WRRR WL +LRARA R
Sbjct:  286 AQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAER 452
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BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.820e-22
Identity = 65/158 (41.14%), Postives = 94/158 (59.49%), Query Frame = 2 
Query:  806 GWAFEPSPYEYDKACSINALIEAGADVEMATVHG----DTPLCIPVVEGSPKALLALLQKGGVVSVQDNVGKTPLHLACCGQRKGIEAVVDTLLRWGADETALDNAGDSPEDLLGKVNDGRGTCSQEVIERVRLLLARAPADRAWRRRGWLAVLRARA 1267
            GW         ++A ++  L+EAGAD ++ ++ G    DTPL       S +AL  LL+ G   +  D+ G  PLHLA   Q  G+  VVD LLRWGA ETA++  G++P ++  ++   R   ++E    + +LLARAPADRAWRRRGW+ +LRAR+
Sbjct:  202 GWTALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGAL-VLLARAPADRAWRRRGWVVMLRARS 358
[Close]
BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 6.100e-22
Identity = 79/168 (47.02%), Postives = 98/168 (58.33%), Query Frame = 2 
Query: 1004 GKTPLHLACCGQRKGIEAVVDTLLRWGADETALDNAGDSPEDLLGKVNDGRGT-CSQEVIERVRLLLARAPADRAWRRRGWLAVLRARASRAXXXXXXXXXXAEDSDDAGDGA-GESQQVGREDFVGVGGDVGGQASSGASEVGTEVLDGVGNKVFSGVVVRLVGLRP 1501
            G TPLH AC  Q  G+EA VD LL+WGADETA+ N G++P D L + N+  GT CS   I RVRLLLARAPA+RAWRRR WL +LR+ A  A           E S+D GD   G+ +   RE+    GG V  + + GA EVG E     G    + +V  +VGL P
Sbjct:  280 GTTPLHRACYRQDIGVEATVDLLLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDADEGSNDVGDRKDGKCKGARRENGESAGGGVRSRMN-GAGEVGVEG----GASGLASIVASVVGLGP 442
[Close]
BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.840e-21
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 2 
Query: 1004 GKTPLHLACCGQRKGIEAVVDTLLRWGADETALDNAGDSPEDLLGKVND--GRGTCSQEVIERVRLLLARAPADRAWRRRGWLAVLRARASRA 1276
            G TPLH AC  Q +G+EA VD LLRWGADETALDN   +P DLL + ++   R TCS+  IE+VRLL+ARAPA+RAWRRR WL +LR+ A  A
Sbjct:  257 GGTPLHWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTA 349
[Close]
BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.410e-19
Identity = 61/133 (45.86%), Postives = 75/133 (56.39%), Query Frame = 2 
Query:  905 GDTPLCIPVVEGSPKALLALLQKGGVVSVQDNVGKTPLHLACCGQRKGI-EAVVDTLLRWGADETALDNAGDSPEDLLGK---------VNDGRGTCSQEVIERVRLLLARAPADRAWRRRGWLAVLRARASR 1273
            G  PL    V G  + ++ALL++ G    QDN G++ LH AC G   G     VD LLRWGA ETALD  G++P D L +         V        Q  ++R  +LLARAPADRAWRRR WL +LRARA R
Sbjct:  272 GSIPLHASAVHGHDETMVALLKREGNFDEQDNAGRSALHWACIGCLSGTGRTAVDLLLRWGASETALDTRGETPSDYLRRGAAAVASSNVTPRNSEKMQREMQRALVLLARAPADRAWRRRCWLVMLRARAGR 404
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS36_ECTSI6.290e-2852.03Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LNI8_ECTSI1.210e-2457.27EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JWW4_9PHAE1.540e-2354.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7H5_9PHAE5.180e-2346.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBP9_ECTSI8.080e-2344.52Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5K1F4_9PHAE2.480e-2241.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSI6_ECTSI4.820e-2241.14Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LRZ8_ECTSI6.100e-2247.02Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRY1_9PHAE8.840e-2161.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE08_ECTSI1.410e-1945.86Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1007128..1010343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue2.3e-28
Seed eggNOG ortholog2880.D8LS36
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size2745
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1209.1prot_C-linearis_contig11.1209.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 1008177..1008983 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927438.8820894-UTR-C-linearis_contig11:1007127..10081761622927438.8820894-UTR-C-linearis_contig11:1007127..1008176Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1007128..1008176 -
1690879700.6219141-UTR-C-linearis_contig11:1007127..10081761690879700.6219141-UTR-C-linearis_contig11:1007127..1008176Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1007128..1008176 -
1622927438.9104788-UTR-C-linearis_contig11:1008983..10093671622927438.9104788-UTR-C-linearis_contig11:1008983..1009367Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1008984..1009367 -
1690879700.6533504-UTR-C-linearis_contig11:1008983..10093671690879700.6533504-UTR-C-linearis_contig11:1008983..1009367Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1008984..1009367 -
1622927438.9308548-UTR-C-linearis_contig11:1009425..10098061622927438.9308548-UTR-C-linearis_contig11:1009425..1009806Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1009426..1009806 -
1690879700.6655867-UTR-C-linearis_contig11:1009425..10098061690879700.6655867-UTR-C-linearis_contig11:1009425..1009806Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1009426..1009806 -
1622927438.9479892-UTR-C-linearis_contig11:1010219..10103431622927438.9479892-UTR-C-linearis_contig11:1010219..1010343Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1010220..1010343 -
1690879700.6764371-UTR-C-linearis_contig11:1010219..10103431690879700.6764371-UTR-C-linearis_contig11:1010219..1010343Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1010220..1010343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927438.8961112-CDS-C-linearis_contig11:1008176..10089831622927438.8961112-CDS-C-linearis_contig11:1008176..1008983Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1008177..1008983 -
1690879700.6419277-CDS-C-linearis_contig11:1008176..10089831690879700.6419277-CDS-C-linearis_contig11:1008176..1008983Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1008177..1008983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1209.1

>prot_C-linearis_contig11.1209.1 ID=prot_C-linearis_contig11.1209.1|Name=mRNA_C-linearis_contig11.1209.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=269bp
MATVHGDTPLCIPVVEGSPKALLALLQKGGVVSVQDNVGKTPLHLACCGQ
RKGIEAVVDTLLRWGADETALDNAGDSPEDLLGKVNDGRGTCSQEVIERV
RLLLARAPADRAWRRRGWLAVLRARASRANANANAGGEGAEDSDDAGDGA
GESQQVGREDFVGVGGDVGGQASSGASEVGTEVLDGVGNKVFSGVVVRLV
GLRPGGVSHGPGVFVRKISRSRCMMSDCFHVYVLCFGQVAAVFLLWIAVV
RNLRVKRRNLATRKLCSR*
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mRNA from alignment at C-linearis_contig11:1007128..1010343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1209.1 ID=mRNA_C-linearis_contig11.1209.1|Name=mRNA_C-linearis_contig11.1209.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3216bp|location=Sequence derived from alignment at C-linearis_contig11:1007128..1010343- (Chordaria linearis ClinC8C monoicous)
AGGGCGAGGGCGGAGTATTGGGCGGTGTGGTGAAGCTGCTGGTAGGGCTG
GAGCCGGAGGGCGTGTTTCGCCGGGTCCTGAAGTTTCTGTGAGCAAGAGT
GCGCGTCATAGCATAGCCTAAACGGTGAGTTGTGGTTGCTATGTCTGCTT
TTCGTATTTTTGTGCTTTGGTCAAGTAGCGGCGTCTTCTTGCTTGTGCAT
CGCTGTCGTTCGAAGTCTTCGAGCAACGTGTGGAGTGCCGGCTAAACTGC
AGGCCATTTGGCTGTTGTACCGGACAAAGGCCTTTTTCGTTGTGGGAGTT
GATGACGCGTCCTACTAGCTCGCTTGGATCTCACGCTCTAAGCTCAATTG
ACATCATACGTAACAACGATGGTGAAAACCCCCCTCAAAACTCGACGTGG
ATCGTGTGTTGGCGCTGTTTCTAGATGTACTGCTGTGGGTAGTGTACGAG
GCTGCAGCTGTCATCCAATGTGCTGGCCGATCGCGGTGTTGTCTTCAGAG
TCTCGTAGGCTGAACTTTAGTCCCTCTCCCCCCGCAGGACACCAGTTTCA
TGCCTCGGCGAGAGCTCGTGCCGCGGCTTCGATCAAGTGGGCGGATTTCT
GAGGAGCAGTGTTTATCTCTTAAACAGGCGGTAGATTGTCAAGGTGGTGC
TCGTCTGGAGATTGCGAGGCCTAAAGCTCCCGTGAAAGTCTGTTCTACTG
TTTGGTTTTGGGTGCCGTCCAAGCGAAGTGCGTGCGAAACGCGAGGAATA
TGAAGGCTGGCTTGGAGTAGTGGTGCTGTGGTGTTAATTACATTGGCTGT
GACTGCGAATTGGCGTTCTTGAACGATGCTTTTGTGAAAAGTAGGACCCT
GCGTGACAACATTGCCTGTGGGGGAAGTGGGCTGTACGTGCCTTTGGCTG
AACGCTACGTGCCTGTTCTGGGCTTTGGTTCCATCACGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTG
TTGTTGTTCTGAGCATTGTTTTATACGGAGTATTGTTTTGCTGCTGCGTT
TCCGGATATTTTCGTTTGCGTTTTCGGACTATTTACCGTTGGCCTTTGGC
CGCGGAAACAACTTCTCACTGGTCGAACCAGCGAGTTAGAAGAGTACTCG
GTTGTAGAAATAAGGGGGGTGGTTTTAATTTAGCCGCTGCTCGCGGGAGA
AACCCCGAAAATGGCGTACTACACAGCACGCAGGCGCTCGTCCGCACCTA
CGCAGCGAGTTGTGTCTTAGCAGCAGGGCTGGGCGTTTGAACCTTCGCCC
TACGAGTACGACAAGGCGTGCTCGATTAACGCGCTGATCGAGGCCGGGGC
AGACGTGGAGATGGCAACGGTTCACGGGGACACACCTCTGTGCATTCCCG
TAGTAGAGGGCAGCCCGAAAGCCTTGCTCGCTCTTTTGCAGAAAGGAGGA
GTCGTCAGCGTGCAAGACAACGTGGGAAAGACGCCTTTGCATCTGGCCTG
CTGTGGCCAGAGGAAAGGCATTGAGGCAGTCGTAGACACTCTGCTGAGAT
GGGGTGCGGATGAGACGGCCTTGGACAATGCTGGCGATTCCCCTGAGGAT
TTGCTCGGCAAGGTGAACGACGGCCGTGGCACGTGTTCGCAAGAAGTCAT
CGAGCGCGTGCGACTGCTTCTGGCTCGGGCTCCGGCCGATCGGGCGTGGC
GTCGCCGCGGCTGGCTGGCCGTGCTTCGTGCACGCGCTTCTAGGGCCAAC
GCTAACGCCAACGCTGGCGGTGAAGGAGCTGAGGATTCGGACGACGCTGG
CGATGGAGCAGGTGAAAGCCAACAGGTGGGGCGCGAGGATTTCGTGGGCG
TTGGTGGTGACGTGGGCGGTCAGGCCAGCAGCGGGGCGAGCGAGGTCGGA
ACCGAGGTGCTGGATGGGGTGGGAAATAAGGTCTTCAGCGGTGTAGTGGT
CAGACTGGTCGGGCTGAGGCCGGGGGGCGTTTCGCACGGTCCTGGAGTTT
TTGTGAGGAAGATCTCGCGGTCACGGTGTATGATGAGCGATTGTTTTCAT
GTCTATGTTTTGTGTTTTGGTCAAGTAGCAGCAGTCTTCTTGCTTTGGAT
CGCTGTTGTTCGAAACCTTCGAGTAAAGCGTAGAAATCTTGCCACTCGTA
AACTATGTAGTAGATAGCGCATTTATTTGTGATCAATTTGGAGAGAGTAG
GAGGGTGTCGCCGCGGAGTCTTCTTCATTTATGGAATTGAGGCCTCGCGC
TTGTTCGTCTTGAATCTCCCGCAATGCTCCTACATAGTTGGACAAAATCA
TTCACAGCAACAAGCGGGACCCTTAGCTTGGGTATTTTCAATTTCTTTTT
TGTTCCTTCGACCCAGAACACCACAATCATTCATGCTGCGGACAAGAGCT
CGTACCACAGCTTTGGTCAAGTGGGGCGGGGGAGAGGGGTCTCCAATGCT
GTGTTTATCTTTTGAAAGGTGATGGGTTGTCAAAATCGTACTCTTCTGGA
GTCTAGAGGTTTGGAGGCGCAACACCCACGCAACCTCTCCTCTATTGCTG
TTGGTTTTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCCCAAGCGAAGCG
CATACATACGAAGCGCGAGAAAGATGAACGCTGGCTTGGAGCGTTGGCAC
TCCAGTTCAGGCTCATCACGCTTTCTCTGGTTGCGGATTGTCATCCTCGA
ACGATGCTATAGTGTAGTACCCTGCGTGGCAGTATCCCTTGTGTTGGAGG
TGGGCTGTACACGTTCTTGGCGGAAAGGCTTGCCTGTTCCGGGCTTTTTG
TTCCGTTCCTGTTTGTGTTTTTGTTGTTTTGGGGCCTTTTACAGTTTATT
GTCTGCTTTCGTGGTGAATCTTTCTTTTTGGGCTTTCTGAATTCAGCCAC
GAGAACCGTATCTACTGGTCAAATCTACATTATAGGGGAGTACTCGGTTG
AAGAGGTAAAGTAGTTTCTGGTATAGCCGTTGCTCCCAAAGAGGAACCTC
GAGAATCAATTGCGTACGTATGCGGCACGCAGGCCCGACCAGACCGAGTG
ACACTTTGAATCGTCAACACAATATGTGTGGGAGCATTTCTCAGCCGCTT
CCGTGCTTGTTCGGAGCGCGCATGTTTGCAGGTGTATGAACAGCAGGGTT
AAAGAAATATTTCAGTAGTTTTTTGCAAGCCGATAAGAAAAGTATTGCAC
GTCGTGTACGTACATA
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Coding sequence (CDS) from alignment at C-linearis_contig11:1007128..1010343-

>mRNA_C-linearis_contig11.1209.1 ID=mRNA_C-linearis_contig11.1209.1|Name=mRNA_C-linearis_contig11.1209.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at C-linearis_contig11:1007128..1010343- (Chordaria linearis ClinC8C monoicous)
ATGGCAACGGTTCACGGGGACACACCTCTGTGCATTCCCGTAGTAGAGGG
CAGCCCGAAAGCCTTGCTCGCTCTTTTGCAGAAAGGAGGAGTCGTCAGCG
TGCAAGACAACGTGGGAAAGACGCCTTTGCATCTGGCCTGCTGTGGCCAG
AGGAAAGGCATTGAGGCAGTCGTAGACACTCTGCTGAGATGGGGTGCGGA
TGAGACGGCCTTGGACAATGCTGGCGATTCCCCTGAGGATTTGCTCGGCA
AGGTGAACGACGGCCGTGGCACGTGTTCGCAAGAAGTCATCGAGCGCGTG
CGACTGCTTCTGGCTCGGGCTCCGGCCGATCGGGCGTGGCGTCGCCGCGG
CTGGCTGGCCGTGCTTCGTGCACGCGCTTCTAGGGCCAACGCTAACGCCA
ACGCTGGCGGTGAAGGAGCTGAGGATTCGGACGACGCTGGCGATGGAGCA
GGTGAAAGCCAACAGGTGGGGCGCGAGGATTTCGTGGGCGTTGGTGGTGA
CGTGGGCGGTCAGGCCAGCAGCGGGGCGAGCGAGGTCGGAACCGAGGTGC
TGGATGGGGTGGGAAATAAGGTCTTCAGCGGTGTAGTGGTCAGACTGGTC
GGGCTGAGGCCGGGGGGCGTTTCGCACGGTCCTGGAGTTTTTGTGAGGAA
GATCTCGCGGTCACGGTGTATGATGAGCGATTGTTTTCATGTCTATGTTT
TGTGTTTTGGTCAAGTAGCAGCAGTCTTCTTGCTTTGGATCGCTGTTGTT
CGAAACCTTCGAGTAAAGCGTAGAAATCTTGCCACTCGTAAACTATGTAG
TAGATAGATGGCAACGGTTCACGGGGACACACCTCTGTGCATTCCCGTAG
TAGAGGGCAGCCCGAAAGCCTTGCTCGCTCTTTTGCAGAAAGGAGGAGTC
GTCAGCGTGCAAGACAACGTGGGAAAGACGCCTTTGCATCTGGCCTGCTG
TGGCCAGAGGAAAGGCATTGAGGCAGTCGTAGACACTCTGCTGAGATGGG
GTGCGGATGAGACGGCCTTGGACAATGCTGGCGATTCCCCTGAGGATTTG
CTCGGCAAGGTGAACGACGGCCGTGGCACGTGTTCGCAAGAAGTCATCGA
GCGCGTGCGACTGCTTCTGGCTCGGGCTCCGGCCGATCGGGCGTGGCGTC
GCCGCGGCTGGCTGGCCGTGCTTCGTGCACGCGCTTCTAGGGCCAACGCT
AACGCCAACGCTGGCGGTGAAGGAGCTGAGGATTCGGACGACGCTGGCGA
TGGAGCAGGTGAAAGCCAACAGGTGGGGCGCGAGGATTTCGTGGGCGTTG
GTGGTGACGTGGGCGGTCAGGCCAGCAGCGGGGCGAGCGAGGTCGGAACC
GAGGTGCTGGATGGGGTGGGAAATAAGGTCTTCAGCGGTGTAGTGGTCAG
ACTGGTCGGGCTGAGGCCGGGGGGCGTTTCGCACGGTCCTGGAGTTTTTG
TGAGGAAGATCTCGCGGTCACGGTGTATGATGAGCGATTGTTTTCATGTC
TATGTTTTGTGTTTTGGTCAAGTAGCAGCAGTCTTCTTGCTTTGGATCGC
TGTTGTTCGAAACCTTCGAGTAAAGCGTAGAAATCTTGCCACTCGTAAAC
TATGTAGTAGATAG
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