mRNA_C-linearis_contig11.1174.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1174.1
Unique NamemRNA_C-linearis_contig11.1174.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.390e-69
Identity = 156/226 (69.03%), Postives = 174/226 (76.99%), Query Frame = 3 
Query:  354 RYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAEGACFSADSDTDQLGEVTI 1031
            +YGFDPHDDSDNLRIHNN+V+                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX         AIFESMEGDYS N CTDNKYG RWSVGA++NK+YDNE+YDS+QYGIYMY GSDLPYV        + GLPSYNIIANNIIDTA EGIK+GDTVGNEFTGNVI NT  LRFR+S + IWK N +PAG+ ID+EG+CF++DSD  QLGE  I
Sbjct:  280 KYGFDPHDDSDNLRIHNNIVWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIFESMEGDYSNNKCTDNKYGFRWSVGASHNKIYDNEVYDSQQYGIYMYEGSDLPYV--------SDGLPSYNIIANNIIDTATEGIKMGDTVGNEFTGNVITNTADLRFRNSSEVIWKDNDIPAGVDIDSEGSCFTSDSDIVQLGEEAI 497
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 2.090e-45
Identity = 121/228 (53.07%), Postives = 154/228 (67.54%), Query Frame = 3 
Query:  342 WL*CRYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAEGACFSADSDTDQLGEV 1025
            W   +YGFDPHDDSDNLRIHNN+VY NGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SGSG +CIAIFES + + S N CT N+ GIR S+G++YNK++DN++ D+    I+MYLGSD        D   TG     N+  NN ++ +  G+ + +T      GN   +TD   ++DS   +W+ N +     +     C +++SD DQ+  V
Sbjct:  133 WFGQQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDIEISDNLCTQNEEGIRLSMGSSYNKIFDNQVIDTAGRSIWMYLGSDEVEASAATDGMCTG-----NLFQNNYLEGSETGVAMTETRDTMLIGNTFIDTDNNEWKDSDGLVWRDNNIDGDFDMRFSDTCVTSESDFDQINGV 355
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.040e-41
Identity = 123/246 (50.00%), Postives = 153/246 (62.20%), Query Frame = 3 
Query:  279 LWRRNTMLQIDS*RLCCRLVLWL*CRYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAEGACFSADSDTDQL 1016
            LW  NTM                   YGFDPHDDSDNLRIHNN+VY NGNHGIIASKRC    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX++GSG +CIAIFES   + S N CTDN+ GIR S+G++YNK++DN++ D+    +++YLGSD        D   TG     N+  NN +D A+ G+K  +T  N   GN +   +     DS   +W  N +    +I  E  C S++SD DQ+
Sbjct:  265 LWEYNTMRNSGY--------------YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTGSGSACIAIFESFGIEISDNVCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRSLWLYLGSDEIIASAATDGMCTG-----NLFQNNYLDGASIGVKFSETRDNMLIGNTMVGVEESLIDDSDGLLWSDNEVEDDFEIGIETTCLSSESDFDQI 491
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 9.560e-37
Identity = 122/226 (53.98%), Postives = 136/226 (60.18%), Query Frame = 3 
Query:  354 RYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAEGACFSADSDTDQLGEVTI 1031
            +YGFDPHDDSDNLRIHNN+V+                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX         AIFESM+                                     GIYMY GSDLPYV        + GLPSYN+IANNIIDTA EGIK+G+TVGNEF GNVI NT  LRFR+S   IWK N +P G+ ID EG+CF++DSD  QLGE  I
Sbjct:  208 KYGFDPHDDSDNLRIHNNIVWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIFESMD-------------------------------------GIYMYEGSDLPYV--------SDGLPSYNLIANNIIDTATEGIKMGNTVGNEFMGNVITNTADLRFRNSSGVIWKDNDIPVGVDIDPEGSCFTSDSDIAQLGEEAI 388
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 4.610e-36
Identity = 104/247 (42.11%), Postives = 126/247 (51.01%), Query Frame = 3 
Query:  282 WRRNTMLQIDS*RLCCRLVLWL*CRYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTM--PAGMKIDAEGACFSADSDTD 1010
            WRRN M                   YGFDPHDDSD L IH+N VY NGNHGIIASKRCN   XXXXXXXX                          +GD+ +A+ ES   D S N   DNKYG+R SVG A N    N I DS +Y +Y Y GSD P+VV+        G    NI ++N I    E IK+    G EF  N  ++  T+RF D+  TI  GNT    A +K+ ++GACF   SD+D
Sbjct:   96 WRRNKMHHNRE--------------YGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDS-------GRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGNTGLGSATLKV-SKGACFDKKSDSD 320
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.560e-31
Identity = 89/244 (36.48%), Postives = 108/244 (44.26%), Query Frame = 3 
Query:  282 WRRNTMLQIDS*RLCCRLVLWL*CRYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAE-GACFSADSD 1004
            WRRN M                   YGFDPHDDSD L +H+N VY NG HGIIASKRCN VS                               +  +GD+ +A+ ES   D S N   +NKYG+R SVG   N    N I  S +Y  Y YLG+D P VV         G    N    N I    E +KI D  G EF GN   +  T+RF D+ +T+  GNT     K+    GA F   +D
Sbjct:   37 WRRNKMHDNKG--------------YGFDPHDDSDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKS-------GRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGNTGLTDTKLKVHNGASFDKRAD 259
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 8.000e-30
Identity = 99/244 (40.57%), Postives = 119/244 (48.77%), Query Frame = 3 
Query:  282 WRRNTMLQIDS*RLCCRLVLWL*CRYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGSG--DSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDA-EGACFSADSD 1004
            WRRN M                   YGFDPHDDSD L IH+N VY NG HGIIASKRCN VS                    XXXXXXXXX       D+ +A+ ES   D S N   +NKYGIR+SVG+  N  ++N I  S +Y  Y YLGSD P VV+        G    N+   N I    E IK+ D  G +F  N   +  T+RF D+ +T+  GN      K+    GA F A SD
Sbjct:  270 WRRNKMHDNSG--------------YGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVDS-------GRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGNIGLNMSKLKVVNGASFDASSD 492
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.170e-29
Identity = 92/261 (35.25%), Postives = 125/261 (47.89%), Query Frame = 3 
Query:  282 WRRNTMLQIDS*RLCCRLVLWL*CRYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDT----LRFRDSPQTIWKGNT-MPAG---MKIDAEGACFSADSDTDQLGEVTIC 1034
            WRRN M                   YGFDPHDDSD L IH+N VY NG HGIIASKRCN VS                               +  +GD+ +A+ ES   D S NT  +NKYG+R+SVG A N   +N I ++ +Y  Y YLG+D P VV+        G    N+ + N    A E IKI +  G +F  NV    D     +RF ++ + + +GNT +  G   +K+D + ACF  ++D+   G   +C
Sbjct:  273 WRRNKMHDNSG--------------YGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSS-------GRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDND-ACFDGEADS---GYEPVC 508
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 134 bits (336), Expect = 2.590e-29
Identity = 93/245 (37.96%), Postives = 116/245 (47.35%), Query Frame = 3 
Query:  282 WRRNTMLQIDS*RLCCRLVLWL*CRYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDA-EGACFSADSDT 1007
            WRRN M                   YGFDPHDDSD L IH+N VY NGNHGIIASKRCN   XXXXXXXX                       +  +GD+ +A+ E+   D S N   DNKYGIR SVG A N    N+I  S +Y +Y Y GSD P+VV+        G                E +K+    G EF  N  ++  T+RF D   T+  GN+   G  +   +G+CF   SD+
Sbjct:  270 WRRNKMHHNTE--------------YGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGAAKSVGIFLHRSSDDAIVKDNYVHDNGDAGMALMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVDS-------GRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFKSAKTIRFEDCQGTLMSGNSGLGGASLKVTDGSCFDKKSDS 493
[Close]
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 3.060e-29
Identity = 93/261 (35.63%), Postives = 122/261 (46.74%), Query Frame = 3 
Query:  282 WRRNTMLQIDS*RLCCRLVLWL*CRYGFDPHDDSDNLRIHNNVVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDT----LRFRDSPQTIWKGNT-MPAG---MKIDAEGACFSADSDTDQLGEVTIC 1034
            WRRN M                   YGFDPHDDSD L IH+N VY NG HGIIASKRCN VS                               +  +GD+ +A+ ES   D S NT  +NKYG+R SVG A N   +N I ++ +Y  Y YLGSD P VV+        G    N+ + N    A E IKI +  G +F  NV    D     +RF D+  ++ +GNT +  G   +K+    +CF  +SD+   G   +C
Sbjct:  277 WRRNKMHDNSG--------------YGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSS-------GRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKV-TNDSCFDGESDS---GYEPVC 512
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9I9_9PHAE1.390e-6969.03MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G1G2_ECTSI2.090e-4553.07Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G1G1_ECTSI1.040e-4150.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LKL1_ECTSI9.560e-3753.98Mannuronan C-5 epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ9_9PHAE4.610e-3642.11Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAK0_9PHAE5.560e-3136.48Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE8.000e-3040.57Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
D7G339_ECTSI2.170e-2935.25Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
A8CEP1_SACJA2.590e-2937.96Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
D7FXE4_ECTSI3.060e-2935.63Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:512504..519025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue2.1e-22
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionmannuronan C-5 epimerase C-terminal fragment
Ec32 orthologEc-16_003370.2
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons8
Model size2834
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1174.1prot_C-linearis_contig11.1174.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 514430..517228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927433.1347075-UTR-C-linearis_contig11:512503..5128631622927433.1347075-UTR-C-linearis_contig11:512503..512863Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 512504..512863 +
1690879696.9334776-UTR-C-linearis_contig11:512503..5128631690879696.9334776-UTR-C-linearis_contig11:512503..512863Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 512504..512863 +
1622927433.1488943-UTR-C-linearis_contig11:513464..5134981622927433.1488943-UTR-C-linearis_contig11:513464..513498Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 513465..513498 +
1690879696.956304-UTR-C-linearis_contig11:513464..5134981690879696.956304-UTR-C-linearis_contig11:513464..513498Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 513465..513498 +
1622927433.1634657-UTR-C-linearis_contig11:514095..5141241622927433.1634657-UTR-C-linearis_contig11:514095..514124Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 514096..514124 +
1690879696.969014-UTR-C-linearis_contig11:514095..5141241690879696.969014-UTR-C-linearis_contig11:514095..514124Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 514096..514124 +
1622927433.1835828-UTR-C-linearis_contig11:514343..5144291622927433.1835828-UTR-C-linearis_contig11:514343..514429Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 514344..514429 +
1690879696.9792955-UTR-C-linearis_contig11:514343..5144291690879696.9792955-UTR-C-linearis_contig11:514343..514429Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 514344..514429 +
1622927433.2698722-UTR-C-linearis_contig11:517228..5190251622927433.2698722-UTR-C-linearis_contig11:517228..519025Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 517229..519025 +
1690879697.0340185-UTR-C-linearis_contig11:517228..5190251690879697.0340185-UTR-C-linearis_contig11:517228..519025Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 517229..519025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927433.1987715-CDS-C-linearis_contig11:514429..5145201622927433.1987715-CDS-C-linearis_contig11:514429..514520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 514430..514520 +
1690879696.988339-CDS-C-linearis_contig11:514429..5145201690879696.988339-CDS-C-linearis_contig11:514429..514520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 514430..514520 +
1622927433.2120533-CDS-C-linearis_contig11:514738..5148491622927433.2120533-CDS-C-linearis_contig11:514738..514849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 514739..514849 +
1690879696.9966612-CDS-C-linearis_contig11:514738..5148491690879696.9966612-CDS-C-linearis_contig11:514738..514849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 514739..514849 +
1622927433.2241392-CDS-C-linearis_contig11:515290..5154601622927433.2241392-CDS-C-linearis_contig11:515290..515460Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 515291..515460 +
1690879697.0049193-CDS-C-linearis_contig11:515290..5154601690879697.0049193-CDS-C-linearis_contig11:515290..515460Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 515291..515460 +
1622927433.2401748-CDS-C-linearis_contig11:515940..5159971622927433.2401748-CDS-C-linearis_contig11:515940..515997Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 515941..515997 +
1690879697.0132017-CDS-C-linearis_contig11:515940..5159971690879697.0132017-CDS-C-linearis_contig11:515940..515997Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 515941..515997 +
1622927433.2549682-CDS-C-linearis_contig11:517129..5172281622927433.2549682-CDS-C-linearis_contig11:517129..517228Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 517130..517228 +
1690879697.0238795-CDS-C-linearis_contig11:517129..5172281690879697.0238795-CDS-C-linearis_contig11:517129..517228Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 517130..517228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1174.1

>prot_C-linearis_contig11.1174.1 ID=prot_C-linearis_contig11.1174.1|Name=mRNA_C-linearis_contig11.1174.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=176bp
MLHRSSDHAIVRNNTISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSV
GAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIA
NNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAG
MKIDAEGACFSADSDTDQLGEVTIC*
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mRNA from alignment at C-linearis_contig11:512504..519025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1174.1 ID=mRNA_C-linearis_contig11.1174.1|Name=mRNA_C-linearis_contig11.1174.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6522bp|location=Sequence derived from alignment at C-linearis_contig11:512504..519025+ (Chordaria linearis ClinC8C monoicous)
GTTGGGTCTCATCTCAGTTTTGACGACCGCTGTGCTGTTTCGTGAGGGAA
AGCAAACAAGCTCGATGTGCTGCCTACCTAGTCGTCAGTTGTGCACCTTG
GAGTGGAGTGGAGGCCAGGGCGAGGGTTAGGATGGTGAAGGGTTTTCATT
CCTGCTTGTTTCGAATTGTGTGGTGACTTGACTCCCATCCTTCCTACCTC
CTGTGCCTTCGTCGGTGTGCCGTTGATTTCGTGTCCCCTGCCTCGTGTTG
TCTGATCACGCTTGACCCTGCTTGGGTTCTGTGGCGGCGAAATACGATGT
TGCAAATCGATTCATGACGTTTATGCTGCCGGCTGGTGCTCTGGCTGTGA
TGCAGATACGGTAAGCCCGACCCCTGGTCGAGACAGCGCTGATGCACGAT
AGAATAGAGCGAGAAATGCTCCAGCTTTGTTGGGTTCATGGAGCTATACT
ATGCTTGGGACACTCGTACCTAGTCTTGTGTACAAATCAACGTTGTTGGT
AATTGATACATACTCCCTCGCGCGTTTTGTGTCCGTTCTTAGCTTTTGTG
TCCTTGAGAAGCAAGCTCGGCCCGCTTCCACCATTCGGCAGAACGCACGA
AGCTTCAACTTCCACTTCCCCACCCTCGCATACACACGTCAATGTACCAC
ACGTCAGTGTATCACCTCTGGTGTTCGTATTCGCGTATTCGCCCCCTTTT
ATTTTTGCCGGCCGTATCGAGGACGATGCGTACAATACGCGCACACTCGA
CAGAGCGAATTGATTCAGCGCGTTGGACTACTGCTGTACCGATTGGGTTG
GTCGAGCCCCTCCGTCCCCACCCACAGTTTCTCCTTGGTCTCTCTGCCCA
CTTAAGCTGAGTCCCACAAAATGCTCCCGCTTTAGTTCGGTTCCTTTGCC
CCGATCGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGCGTGTGTATGT
TACGCGGACAGGCTTTGACCCGCACGACGACTCCGACAACTTGAGGTGAG
GGGTGCTGCTGGATTGTTGTTCGGATCGATCGATCATCATGGGTTCTGCG
GATTCGTAGAGTAGAGGGCTCGGTGCTCATGGGCCTGTTTATTCGCTGCC
TCCCCACAAGAGCGGGCCTTATTTTTTCGTTAATCTTCGGGGCGGGGGGG
GCGTCTTTTTTGTTTCGACACTGTTTGTGGTTGCCATATCGACCACGCTG
CCAGTGCTGACGAGCCACAAGTTTCAAGTTTCACTAGGCGCGCGGGGTTT
TTCATGTTTTTTGCATGCGAAACAAGACGGATTCATGTTGCAAAACAAAA
CAAGGCAAGCCAAAACACCCGACCGAGTGTAGAATAAGAATAAGGTTCGC
GGCATGCTTTTGCACGGAAGAAGCGCTACACGCACGCAGAAGGAGTAGTG
GCACCCCCGTGGCGGAGCCGAGCGTCTTTGATTTTGTTTTTCTCGCGTTT
TTGTAGTTATTTTTGTGACATGTGTGTAGGTCATGTTTGTGTGTGTAGCG
CACGCTGCGCACCTCTAACCCCCCCCCCTGCTGTCGATGCCGTCTCGCCC
ACGGACGCTCGTTGTCATGTGACTTGTCTTTCTGCGGACCAGGATTCACA
ATAATGTGGTTTACGGCAACGGTGAGCAACAAGTCGAGATGATGGAGGGC
ATAAGTCCTTGTCAATTTTCGTGGTTTGAGTTGTTGTTGATGCTGCTGTC
GATACCGCGATGGTGCTGCTATGGTGCTAATGGTTTAAAGTCGGCGTTTG
TGATGGCGCCCTCTAAAAACCTTGCTCTTATAGTTCTAGCTCGGATTTTC
TCTCTTCTTTCCATCATCGTCGGCGTTTTTTTTCATCCAGGCAACCACGG
GATCATCGCCTCGAAGCGGTGCAACGACGTTTCCATCCAGAACAACGTGG
TGTACGACAACCTCAATGCGGGCATTATGCTCCACCGCTCCAGCGACCAC
GCCATCGTGCGCAACAACACCATCTCGGGCAGCGGGGACTCCTGCATCGC
CATCTTCGAGTCCATGGGTGAGGCAGGACAAGAGAGAAAAGAACCTTGAC
AAACGTGCACCTTGATGCTTAGTTCATCAGCACGGCGAAGGGTGACTGGC
TTCATACAGCAGCGGCAACACCTGTGTTGGATCGACCTACAGCACGCCCC
GTTGTGTTGCCTGAGTCGTTTCGTTTTTGTCGCCACTTTGTTTTTCTGTC
GTTTGCCACTTTCTTTTTCTCATCACTGAGGGCAGAGGGTGACTACAGCG
GCAACACCTGCACCGACAACAAGTACGGCATCCGCTGGTCTGTCGGCGCG
GCGTACAACAAGGTCTACGACAACGAGATCTACGACAGCGAGCAGTGTGA
GTCGATCTGTCTTGCTTCGTCTTGTATTTCCGCCAAATCAAGGCAAGCCC
GCGACGTGCCACGCCGATGATGATGGGTGGAGATGGATGGGATATGCCTG
TCAATGCTCGAAGACTCCCAACACTACCCGTTTCGTTCTTCCGCCCCACC
CTCCACGATGCCGTTCAAATCCAACAGACGGCTTCTGCTTTGTATTCTAC
TTTGTATTCTACGTGACTTTTTGGTTTACCTCTCTTGCCAATTCAATGCC
CATATTCCACATCCAGTATATAGCGTGTATGCCTTGTGTTCAAGTTTAAA
TATGGCCCAAGAATTTTTGGTCGGACATTTTTGTTGTTACCATGACCTAA
ACATACATACACCATTTGTTGTTTTCCTATCTTTTTTTCGTTCCCTGTCT
CCTTCCCCGTCAAATCTTATATGTCGCGTTTCCGAAGACGGTATCTACAT
GTACCTGGGCAGCGACCTGCCGTACGTGGTGAATGAAAACGACACGTATT
ACACCGGCGGCCTCCCGTCGTACAACATCATCGCCAACAACATCATCGAC
ACCGCCGCCGAAGGGATCAAGATCGGCGACACCGTGGGCAACGAGTTCAC
GGGAAACGTGAGTGGCTGGCTGAGTAGCTGGCTGAGGGTCAGCGTGAGGG
TCTGGATTTAGATAGGGCTAGGGCTAGGGCTCGCCGAGCGTGTAACGATT
GGCGACGTTTCTACTGCGGGCAACGAGTTCACGGGAGAGACAAGCAGGCG
GGAGGGGGAGACAGGGGCAAGGAAGGGGGGTACAGAAGCGGGAAACCGGT
GGAAGACTCCAACCCTTCGTCCAAAGCAGCAAGCGCTACTGCTTTCCTAC
TCTCTCTCTCTCTCTCTCTCTCTCTCTTAAAACGCAAGTTTTAGGGGTTA
CGAAAGGATTGACCCAAGGATAGGGCTAAGTGTCTGTATTCGGACCACTG
CTGTATTCAGGAACCGTTTTCATCGTCGAAGGGATGCGATTAATCGGAGT
CCAGTTGTCACGCCCTTTGTACATACCGCCCTCACGCCTACACAACCTGT
GTTTGCATCTGTTCGGTTTTTGTTTGTTGGTGCACAGGTGATCAGAAACA
CGGATACCCTGCGCTTCAGAGATTCGCCCCAAACTATATGGAAGGTATGT
TTGTGGTTTTGTCAATCGGACCCCCTGCTGCGAAGCGATGGCTATCGTGT
TCGTCTTTGCCGCCTTCGGCCTTTGGGGTCTTATCCGTTCGAACTCTGCC
GTAGCTTTCGTGTGATTTGCTCGCGTGCACCCCGTTGTTTGTCGTGATTT
TTGTGCGTATCATATGTTCAGTATACTTCCTCTGTCTCATAAGTTAGGGT
ACCTACATTTGTACGGGCCCTTAACCGTGTCCGATCTATTTTCCGAGTTT
TTTGTTGAAATTGTCGCTGTTTTTTTAGTACAAAACATGTTTTGTTTTTT
TCCAGCTGGTGCTTGAACCATGCGGCCGAACGGCCGAAAAATATCCAGCC
GGCCCAATAACGGTCGTATTTCACGCGTTTCCCACGGGAAAGAAAGTGAC
GAGCAAAAACAAGATCGTCCTCGCCATCGCTGGGACTCGATGCCTGCCAC
GCATAAGCCTTCCCTAAGGCCTCTTTGTTGTGTTTTACCACCCTTTCCAA
CGTCCCCTCCCTCTGCCGCTTCCTCACCCCATTATGCTCCACACTAATTC
TTTATCGCCCATCTTACGGAGTGTTTGGTTGTTAACCTTGAAGAGGCTTT
GCCACACCCGTCACGATATATTCCCATAACAGGCCACAATAGGGTATATT
TTGACCAATTTTAGGTACACAGAAATAGATCTTCGTTTATTTTATCTTTC
TAACGAACCCGACTATGCTACCATCACTAACACGGTTGCACCCATACAAT
GTATGGCATTTAGGTATCCTAACTTATGAGACAGAGGAAGTACACAGCAG
CAGTACCCGGCGTCAACCGTGTACTTGGTATTTTGTTTTGCTCTTTTTGT
TTTTTCGCTGGTCTTGATATTGTTCCAGGAGCCCAGCCCAAGTTATAGCC
AGATTGTTCACCTGTCTCCTTCCGCTCTTCTAGTTTTTGTTTTTTTGTCT
TGATCTCCGTCAGGAGCCCAACCTCTTCGGCGTTACCTTTGTCTTTCCGA
CGTTGACCTTTTTGGTTGGTGCTAGCTGCTGATGTGAATTCCTGATCACT
TGTTTGCTTTGTTGTTTTTGTCTTGTGGTGTTTTGTCTTTTTTTTCCGTT
GGGCTTGATTGCTCTCCTTCCTTCAGGGCAACACCATGCCGGCGGGAATG
AAGATCGACGCGGAAGGGGCGTGCTTTTCGGCCGACTCCGACACGGACCA
GCTGGGAGAGGTCACCATCTGCTAAAAACGTTGTAGCCGCGAAAAAAGCG
CCAATAGCCGGCACAGCCAAGTCAAAAAGTCGAAGCGGCATGTTCTTAGG
CATAAGTCCAGTCCCCCGTCGAGCATGTGCCCCATGCAACGCGCTTCGCT
GGGCCTAGGACGTTGCCACGCGGCGGCACGCGGTTTACCGGTGATGTAAG
CTATTGTAGGGTTTTCAGACCCGCGGGGGTTGATTGATCAAATATCCCGT
TTCTCTCTTCTTCTCTTCTTCTCTTCTTCTCTTCTCCTCTGGCGTGTCTG
GCAATCATGTGCGATGGTTGTCCATTGCCGGAGGGTGGGAGAGAGGGAGG
TCAAGGTGCTGTTTTTTCTTCTGTTTTTTGTTTTATTTGGTTTGTGGTAA
ACCCCTGACCCTTGACCCTTGACGCTTGACCCTTGACCCTTGCGTACAGA
GTTTGTTTTCCCCAGGCCCTTTTCTCTTGGGTGACGTTCACGCCTCTTTT
CATGTCGTCTCTTTGGTATTTATTTTTACTTGTCTTCGTCTTTTCCGCGC
GGTCTTTGTACACATGAGAGCCTGCGTGTTTCTCTCGGGCGTGGAAGGAA
TTGGAAGGATGGAATAGCCCCTCCATCCTCTCGAAAATGGGCGCGGACCC
ATACGGTTCGGTCCGTGTTCGGGGATGGATGTCACGGTTCTCCTGGTGTA
AAGTCAACATGACATGACTCCCCACGGAGGGAAGGAGGGAGCGTTTGCCG
ATCGATCCAGATCGCTGTTGCTGTCGCGTTTTTCGGCGATATGCCGTATG
CCACGTTGCATTGGGATTGGGGGTGGGTGAAGTAAACTAAAAGTTGGGGG
ACAAGAGTGAGGCACCGGGCGGCTGGCTCGCCATGCGCCCGTTTTTCGAT
CCGCCTGCTGTGTAAATGAGCGCGTAGAAAGCCCGAGCGTGTTTGGTATA
CAGCACGCATGAAGCACGCTGGTTGTGTAGTAGCACCACTTTTGCGTACT
CTACCGCTGTGAATGGGATGCCCGTGTTCCAACGAAGCCCAGTATTTACC
GGGAGTTCGCACGTGTGCAATCTAGCAATCTCAGCGTGCGGTGGCGAAAT
AGCGAGCGTTTGGCGGGGGGGGTAGGTATAGGTCCGCACTCGTGTTTGTT
TTCAGGCGTCCTGGGGGGCGGCTTGAAGGTTTTTGTAGTGTAAGATATAA
AAGCACATCTAACCTTAATCCATCAGTATTGTAGTACAGTAAGTTTTATT
TCCGTATTTTGTTGGATGTTGGAGACGAGAAAAGGGGGCTCTTGCTGCCC
GCCGTTTTTTTCCCCCAAATATGAAAAAAGGCTTTCTTGTCGTTTTTATT
TAAAATCCATTTCGTGTGGTTTTCGCTGCTTTTTTGCGAGGAAGGAGAGA
GTACAGGCGGCCACGTCAGTATCTGGCCGCTTTGCTGCAGTAGATGGGTT
TAGTTCCTCGACGTGGATTAAAAAAAATCCCTTACATACGAGGAGACGAG
AGATATTCTGGGAGAGGGTGCGGTAGGAGCAGGTGGCGTGGGTGATGATA
CTGGCCCTGTCTACGATATGCCGGGGTACTAGGGGGCCGGCCTTGTGCGC
CCTCTTCCCGAGACGATTTATTTTTGATGTGTCTTCCAGAGGAGGAAAAT
GATCCGAGGTTTGCGTGCTTCATTTTGGCACCCAGCCGTATTGTTACAGG
GGTCCGCGCGTTTGTATGCGTGTGAGATAATCCACCCCTCCGTATTTTGA
TTGCTCCTGTTAATTTGCTAGCAAGCGTTGGCAAGAGAGGAGAAATATTC
GGATACTTTATTGTTCGTCGGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:512504..519025+

>mRNA_C-linearis_contig11.1174.1 ID=mRNA_C-linearis_contig11.1174.1|Name=mRNA_C-linearis_contig11.1174.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at C-linearis_contig11:512504..519025+ (Chordaria linearis ClinC8C monoicous)
ATGCTCCACCGCTCCAGCGACCACGCCATCGTGCGCAACAACACCATCTC
GGGCAGCGGGGACTCCTGCATCGCCATCTTCGAGTCCATGGATGCTCCAC
CGCTCCAGCGACCACGCCATCGTGCGCAACAACACCATCTCGGGCAGCGG
GGACTCCTGCATCGCCATCTTCGAGTCCATGGAGGGTGACTACAGCGGCA
ACACCTGCACCGACAACAAGTACGGCATCCGCTGGTCTGTCGGCGCGGCG
TACAACAAGGTCTACGACAACGAGATCTACGACAGCGAGCAGTAGGGTGA
CTACAGCGGCAACACCTGCACCGACAACAAGTACGGCATCCGCTGGTCTG
TCGGCGCGGCGTACAACAAGGTCTACGACAACGAGATCTACGACAGCGAG
CAGTACGGTATCTACATGTACCTGGGCAGCGACCTGCCGTACGTGGTGAA
TGAAAACGACACGTATTACACCGGCGGCCTCCCGTCGTACAACATCATCG
CCAACAACATCATCGACACCGCCGCCGAAGGGATCAAGATCGGCGACACC
GTGGGCAACGAGTTCACGGGAAACACGGTATCTACATGTACCTGGGCAGC
GACCTGCCGTACGTGGTGAATGAAAACGACACGTATTACACCGGCGGCCT
CCCGTCGTACAACATCATCGCCAACAACATCATCGACACCGCCGCCGAAG
GGATCAAGATCGGCGACACCGTGGGCAACGAGTTCACGGGAAACGTGATC
AGAAACACGGATACCCTGCGCTTCAGAGATTCGCCCCAAACTATATGGAA
GGTGATCAGAAACACGGATACCCTGCGCTTCAGAGATTCGCCCCAAACTA
TATGGAAGGGCAACACCATGCCGGCGGGAATGAAGATCGACGCGGAAGGG
GCGTGCTTTTCGGCCGACTCCGACACGGACCAGCTGGGAGAGGTCACCAT
CTGCTAAGGCAACACCATGCCGGCGGGAATGAAGATCGACGCGGAAGGGG
CGTGCTTTTCGGCCGACTCCGACACGGACCAGCTGGGAGAGGTCACCATC
TGCTAA
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