prot_C-linearis_contig11.1174.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1174.1
Unique Nameprot_C-linearis_contig11.1174.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length176
Homology
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 2.180e-69
Identity = 109/150 (72.67%), Postives = 124/150 (82.67%), Query Frame = 0
Query:   25 AIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAEGACFSADSDTDQLGEVTI 174
            AIFESMEGDYS N CTDNKYG RWSVGA++NK+YDNE+YDS+QYGIYMY GSDLPYV        + GLPSYNIIANNIIDTA EGIK+GDTVGNEFTGNVI NT  LRFR+S + IWK N +PAG+ ID+EG+CF++DSD  QLGE  I
Sbjct:  356 AIFESMEGDYSNNKCTDNKYGFRWSVGASHNKIYDNEVYDSQQYGIYMYEGSDLPYV--------SDGLPSYNIIANNIIDTATEGIKMGDTVGNEFTGNVITNTADLRFRNSSEVIWKDNDIPAGVDIDSEGSCFTSDSDIVQLGEEAI 497          
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.580e-36
Identity = 69/106 (65.09%), Postives = 79/106 (74.53%), Query Frame = 0
Query:   69 GIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAEGACFSADSDTDQLGEVTI 174
            GIYMY GSDLPYV        + GLPSYN+IANNIIDTA EGIK+G+TVGNEF GNVI NT  LRFR+S   IWK N +P G+ ID EG+CF++DSD  QLGE  I
Sbjct:  291 GIYMYEGSDLPYV--------SDGLPSYNLIANNIIDTATEGIKMGNTVGNEFMGNVITNTADLRFRNSSGVIWKDNDIPVGVDIDPEGSCFTSDSDIAQLGEEAI 388          
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 8.050e-26
Identity = 58/154 (37.66%), Postives = 87/154 (56.49%), Query Frame = 0
Query:   16 ISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAEGACFSADSDTDQL 169
            ++GSG +CIAIFES   + S N CTDN+ GIR S+G++YNK++DN++ D+    +++YLGSD        D   TG     N+  NN +D A+ G+K  +T  N   GN +   +     DS   +W  N +    +I  E  C S++SD DQ+
Sbjct:  343 VTGSGSACIAIFESFGIEISDNVCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRSLWLYLGSDEIIASAATDGMCTG-----NLFQNNYLDGASIGVKFSETRDNMLIGNTMVGVEESLIDDSDGLLWSDNEVEDDFEIGIETTCLSSESDFDQI 491          
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 3.680e-25
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 0
Query:   17 SGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAEGACFSADSDTDQLGEV 172
            SGSG +CIAIFES + + S N CT N+ GIR S+G++YNK++DN++ D+    I+MYLGSD        D   TG     N+  NN ++ +  G+ + +T      GN   +TD   ++DS   +W+ N +     +     C +++SD DQ+  V
Sbjct:  205 SGSGSACIAIFESFDIEISDNLCTQNEEGIRLSMGSSYNKIFDNQVIDTAGRSIWMYLGSDEVEASAATDGMCTG-----NLFQNNYLEGSETGVAMTETRDTMLIGNTFIDTDNNEWKDSDGLVWRDNNIDGDFDMRFSDTCVTSESDFDQINGV 355          
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: A0A6H5L0I1_9PHAE (MEP7a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.350e-24
Identity = 55/142 (38.73%), Postives = 80/142 (56.34%), Query Frame = 0
Query:    1 MLHRSSDHAIVRNNTISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIW 142
            MLHRSSD  I+RNNT+SGSG +CIAIFES   + S N CTDN+ GIR S+G++YNK++DN++ D+  + I     +D              G+ + N+  NN +D A+ G++  +T      GN +         DS   +W
Sbjct:   39 MLHRSSDDGIIRNNTVSGSGSACIAIFESFGIEISDNVCTDNEEGIRLSLGSSYNKIFDNQVIDTAGHEIIASAATD--------------GMCTGNLFQNNYLDGASIGVRFAETRDTMVIGNTMVALGGSLIDDSDGLVW 166          
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Match: A0A6H5LHR7_9PHAE (MEP7d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHR7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.280e-20
Identity = 58/174 (33.33%), Postives = 86/174 (49.43%), Query Frame = 0
Query:   17 SGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSVGAAYNKVYDNEIYDSE----------QYG--------IYMYLGSDLPYVVNENDTYYTGGLPSYNIIANNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAGMKIDAEGACFSADSDTDQLGEV 172
            SGSG +CIAIFES + + S N CT+N+ GIR S+G++YNK++DN++ D+           Q G        I+MYLGSD        D   TG     N+  NN ++ +  G+ + +T      GN   +TD   +RD        N +     +     C ++DSD DQ+  V
Sbjct:   66 SGSGSACIAIFESFDIEISDNLCTNNEEGIRLSMGSSYNKIFDNQVIDTAGREFCYHIMPQCGWLTYPRGAIWMYLGSDEVEASAATDGMCTG-----NLFQNNYLERSDTGVSLTETRDTMLIGNTFIDTDNNEWRDXXXXXXXXNDIDGDFDMSFSDTCVTSDSDFDQINGV 234          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1174.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K9I9_9PHAE2.180e-6972.67MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LKL1_ECTSI3.580e-3665.09Mannuronan C-5 epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G1G1_ECTSI8.050e-2637.66Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G1G2_ECTSI3.680e-2535.90Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L0I1_9PHAE2.350e-2438.73MEP7a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5LHR7_9PHAE2.280e-2033.33MEP7d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 116..155
e-value: 2800.0
score: 4.0
coord: 52..74
e-value: 71.0
score: 12.3
coord: 6..28
e-value: 0.52
score: 19.4
coord: 29..50
e-value: 2100.0
score: 4.9
coord: 94..115
e-value: 750.0
score: 8.1
IPR022441Parallel beta-helix repeat-2TIGRFAMTIGR03804TIGR03804coord: 24..66
e-value: 1.8E-5
score: 22.4
coord: 5..44
e-value: 1.4E-4
score: 19.5
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 5..130
e-value: 9.0E-15
score: 54.9
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..93
e-value: 3.1E-16
score: 61.1
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 6..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:514430..517228 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1174.1mRNA_C-linearis_contig11.1174.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 512504..519025 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1174.1 ID=prot_C-linearis_contig11.1174.1|Name=mRNA_C-linearis_contig11.1174.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=176bp
MLHRSSDHAIVRNNTISGSGDSCIAIFESMEGDYSGNTCTDNKYGIRWSV
GAAYNKVYDNEIYDSEQYGIYMYLGSDLPYVVNENDTYYTGGLPSYNIIA
NNIIDTAAEGIKIGDTVGNEFTGNVIRNTDTLRFRDSPQTIWKGNTMPAG
MKIDAEGACFSADSDTDQLGEVTIC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR022441Para_beta_helix_rpt-2
IPR039448Beta_helix
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence