mRNA_C-linearis_contig11.1168.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1168.1
Unique NamemRNA_C-linearis_contig11.1168.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1168.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 7.670e-42
Identity = 100/214 (46.73%), Postives = 122/214 (57.01%), Query Frame = 1 
Query:  811 QELTPTQAAVLAADNKLERLLNVGGILRAK-SVEEYPHGFPQGTPAWDSAGVVVGNRDRATNCGRSEGDRLDLGGGIRVSGGGRDRGREIGAVVADDDVGKVVMEWASRFCERETC-FPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVSHREADRVLRVKR--------SSSTASKKNRWAAVCRQGVKGSHLRVGTKRE 1422
            +ELTP QAAVLA D +L+ LL  GGILR   S  E   GFP+GTP W++    VG RD             D                    VV D+DV    M WA +FCE +   FP+ +S EG+ LG+ L +HV RDGD GLVGT PPTLLVHGLCIRV H E++RVLRVKR          +    ++ WA+V RQGVKG  LR+GTK+E
Sbjct: 1053 EELTPVQAAVLAVDKRLKGLLEAGGILRGTTSGRECLQGFPRGTPVWENHCGRVGGRDEGXXXXXXXXXXXD--------------------VVDDEDVAGGAMGWARKFCESDDGRFPSDESGEGISLGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRHAESNRVLRVKRHPPASGHGEDNAERHEDEWASVARQGVKGCRLRIGTKKE 1246
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BLAST of mRNA_C-linearis_contig11.1168.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 3.750e-40
Identity = 99/214 (46.26%), Postives = 124/214 (57.94%), Query Frame = 1 
Query:  811 QELTPTQAAVLAADNKLERLLNVGGILRAK-SVEEYPHGFPQGTPAWDSAGVVVGNRDRATNCGRSEGDRLDLGGGIRVSGGGRDRGREIGAVVADDDVGKVVMEWASRFCERETC-FPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVSHREADRVLRVKR--------SSSTASKKNRWAAVCRQGVKGSHLRVGTKRE 1422
            +ELTP QAAV+A D +L+ LL  GGILR   S  E   GFP+GTP W++    VG RD  +             GG RV G           +V D+D     M WA +F   +   FP+ +S EG+ LG+ L +HV RDGD GL+GT PPTLLVHGLCIRV H E++RVLRVKR          +    ++ WAAV RQGV+G  LR+GTKRE
Sbjct: 1078 EELTPVQAAVMAVDKRLQDLLIAGGILRGTTSGRECLQGFPRGTPVWENHCGRVGGRDEGS-------------GGRRVDG--------ANDIVGDEDAAGGAMGWARKFFGVDDGRFPSDESGEGIALGKVLAKHVVRDGDVGLIGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPASGHGEDNAKRHQDEWAAVARQGVQGCRLRIGTKRE 1270
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI7.670e-4246.73Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE3.750e-4046.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:437040..439358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue1.6e-39
Seed eggNOG ortholog2880.D8LKL9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1422
Cds size1029
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1168.1prot_C-linearis_contig11.1168.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 437978..439358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927432.4243226-UTR-C-linearis_contig11:437039..4372361622927432.4243226-UTR-C-linearis_contig11:437039..437236Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 437040..437236 +
1690879696.4455378-UTR-C-linearis_contig11:437039..4372361690879696.4455378-UTR-C-linearis_contig11:437039..437236Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 437040..437236 +
1622927432.4359505-UTR-C-linearis_contig11:437781..4379771622927432.4359505-UTR-C-linearis_contig11:437781..437977Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 437782..437977 +
1690879696.4580564-UTR-C-linearis_contig11:437781..4379771690879696.4580564-UTR-C-linearis_contig11:437781..437977Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 437782..437977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927432.4501312-CDS-C-linearis_contig11:437977..4388341622927432.4501312-CDS-C-linearis_contig11:437977..438834Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 437978..438834 +
1690879696.468736-CDS-C-linearis_contig11:437977..4388341690879696.468736-CDS-C-linearis_contig11:437977..438834Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 437978..438834 +
1622927432.4612544-CDS-C-linearis_contig11:439186..4393581622927432.4612544-CDS-C-linearis_contig11:439186..439358Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 439187..439358 +
1690879696.4775598-CDS-C-linearis_contig11:439186..4393581690879696.4775598-CDS-C-linearis_contig11:439186..439358Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 439187..439358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1168.1

>prot_C-linearis_contig11.1168.1 ID=prot_C-linearis_contig11.1168.1|Name=mRNA_C-linearis_contig11.1168.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=343bp
MASSDKETAAPAEGSAVGARFSSMGGSNPSQIAAASNAAANSGHIPNDAS
AAASPGAAEAGAATTTTASAAPNRKPNALGSRGRFSTMNRVVQSFPGNGN
GRGERLQASAPNRAAASAAAGAAANSSGEQQQAAGAGQPQELTPTQAAVL
AADNKLERLLNVGGILRAKSVEEYPHGFPQGTPAWDSAGVVVGNRDRATN
CGRSEGDRLDLGGGIRVSGGGRDRGREIGAVVADDDVGKVVMEWASRFCE
RETCFPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVS
HREADRVLRVKRSSSTASKKNRWAAVCRQGVKGSHLRVGTKRE
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mRNA from alignment at C-linearis_contig11:437040..439358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1168.1 ID=mRNA_C-linearis_contig11.1168.1|Name=mRNA_C-linearis_contig11.1168.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2319bp|location=Sequence derived from alignment at C-linearis_contig11:437040..439358+ (Chordaria linearis ClinC8C monoicous)
CTCGGCAGGGTGTGCGCGTCTGCACGTGTTGTGACTCACCGGCGCGCTCG
CTATTGTCGTCGTGTCGTTCGTCGACCTCATACGCCTGCTGCGGGTGAAA
GGGAGGGGCGACAAGAGGCAAGCTAAGTTGCTGGTGCTGTTGCTGAGAGT
CAAAAACTCCATGTTCCGCGCTGCTCGTGCCGAAAAGAAACGGAAAGGTG
AGGGGGAGTTGATGCAGTAGAGGAGCTCGGACGTCATGTATAGGTCGTTT
GGCGTCGACTTATTTTCGCGCCACTGATATTTTGCATCATGAACGCAAGT
ACCTGGTAGACGATTGGGGTTGAGGTTGGGAGGATTTGCTCCGAGCACCA
AACAAACAAAACGAAACTGGGCTACGAACCTGGACATGAAATCCGTCTTC
GTCTCTCCCGGCCGGGTGCAGCAGACCAAGAGCAACTACTTCGAAACGAG
CTCTCCACTTGCTTTTCTTCTAGCGCTGTTTGTTCCGGGATATTGGTGGC
TTGAATGCAGCCCTGTCATCAGGGTTGACATAAACGATAGCATCGTACTT
GCCAATACAGAGTCTAAATATATTGACACGCAGTACATCTCAACATATGC
GCGACACCACAATGTTGAATCTGGTAGGTAGCCATCAACGAGCGCAATCA
CCCTGCTAGTGGACTGACCTCAACCCCCCTTCCTGAAAGCGCCCGCCAAC
ATTCATTGCGCTCTCTCTTCGTTCCGCCCGCTCTCAACAAAGAAATACTC
GGCACAAGCATGCGTCGATACCGCATGGGCGGCGCGTTGGCTGCTTTCCA
GAAGGCCGCCCCCCGGAGCCCGACGTCGACGGTATCTGCAGTAGCAAAGC
TCCACGCAATAACTTCGAAAGCCACGGCATCAAACAACACCAACACCGCG
CTACTGCGGCGCCTCAAGCCTTGGGTGCAAATCAGCACATGGCGTCGTCG
GATAAGGAGACGGCGGCACCTGCCGAGGGTTCCGCTGTGGGTGCAAGGTT
CTCATCTATGGGTGGAAGCAACCCGAGCCAAATCGCGGCCGCAAGCAACG
CTGCTGCTAACTCCGGTCACATCCCGAACGACGCCAGCGCTGCAGCATCG
CCGGGAGCAGCAGAAGCAGGCGCAGCCACCACCACCACCGCCTCCGCTGC
GCCCAACCGGAAGCCAAACGCGCTCGGGTCGAGGGGGAGGTTCTCGACCA
TGAACCGCGTCGTCCAATCCTTCCCGGGAAACGGGAACGGCCGTGGAGAA
CGTCTGCAAGCCAGCGCTCCAAATCGTGCTGCCGCTAGTGCCGCAGCTGG
TGCGGCAGCCAACAGTTCCGGGGAGCAGCAGCAGGCCGCGGGAGCGGGAC
AGCCGCAGGAACTAACGCCCACGCAAGCGGCTGTGCTCGCGGCGGACAAC
AAGCTGGAAAGGCTGTTGAACGTGGGAGGAATTCTCCGAGCGAAAAGTGT
TGAGGAATACCCCCACGGGTTCCCGCAGGGCACGCCGGCATGGGACAGTG
CTGGGGTAGTGGTGGGCAATCGAGATAGAGCAACAAACTGTGGCAGAAGT
GAGGGCGATAGACTTGATCTTGGCGGTGGCATTCGCGTGAGTGGCGGTGG
GCGTGATCGTGGTCGTGAAATTGGTGCTGTCGTTGCCGACGACGATGTAG
GGAAAGTTGTGATGGAATGGGCGAGCCGGTTTTGCGAACGCGAAACCTGT
TTCCCCGCTGCCGACAGCGAGGAAGGTGTTCGGCTGGGCAGGGCGCTGGT
GAGGCACGTCGCACGCGATGGGGACGCGGGGCTGGTAGGGACCAGGTGGG
AAATGAGAATGAAACCCTCTTAACCTCTACGTCATCATCCTACTACATGC
CGGACCACTGATCCTTGACTTCACTCCCACGTTTCGACGTGCATCCGCCT
AATTATGAACTCGGAAAACACGTTCTCGAATGGCAGAAAAACGAAAAATT
GAGAACGCCGACAATTTAAGCCGATGCCCTTTCTGTAGTCCTTCTGTTTC
CCAGGTTGTGTGCGGATGCGTAGGATGCCCTTCTTGATGATGGCCATAAC
AACAGCGTCATCAGCACACGTCGAATTGCTCACTCTTAACTAACGCCTAC
AGTACGTACCTGCATTCCTGAACGAATTAACTTCATACCCCACACAGGCC
GCCGACGCTGCTTGTGCACGGTTTGTGTATCCGCGTCAGTCACCGGGAGG
CTGATCGCGTTCTGAGGGTCAAGCGAAGTAGTAGTACCGCCAGTAAGAAG
AATCGGTGGGCTGCAGTATGTCGGCAAGGGGTGAAGGGATCCCATCTGCG
GGTTGGAACGAAGAGAGAG
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Coding sequence (CDS) from alignment at C-linearis_contig11:437040..439358+

>mRNA_C-linearis_contig11.1168.1 ID=mRNA_C-linearis_contig11.1168.1|Name=mRNA_C-linearis_contig11.1168.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at C-linearis_contig11:437040..439358+ (Chordaria linearis ClinC8C monoicous)
ATGGCGTCGTCGGATAAGGAGACGGCGGCACCTGCCGAGGGTTCCGCTGT
GGGTGCAAGGTTCTCATCTATGGGTGGAAGCAACCCGAGCCAAATCGCGG
CCGCAAGCAACGCTGCTGCTAACTCCGGTCACATCCCGAACGACGCCAGC
GCTGCAGCATCGCCGGGAGCAGCAGAAGCAGGCGCAGCCACCACCACCAC
CGCCTCCGCTGCGCCCAACCGGAAGCCAAACGCGCTCGGGTCGAGGGGGA
GGTTCTCGACCATGAACCGCGTCGTCCAATCCTTCCCGGGAAACGGGAAC
GGCCGTGGAGAACGTCTGCAAGCCAGCGCTCCAAATCGTGCTGCCGCTAG
TGCCGCAGCTGGTGCGGCAGCCAACAGTTCCGGGGAGCAGCAGCAGGCCG
CGGGAGCGGGACAGCCGCAGGAACTAACGCCCACGCAAGCGGCTGTGCTC
GCGGCGGACAACAAGCTGGAAAGGCTGTTGAACGTGGGAGGAATTCTCCG
AGCGAAAAGTGTTGAGGAATACCCCCACGGGTTCCCGCAGGGCACGCCGG
CATGGGACAGTGCTGGGGTAGTGGTGGGCAATCGAGATAGAGCAACAAAC
TGTGGCAGAAGTGAGGGCGATAGACTTGATCTTGGCGGTGGCATTCGCGT
GAGTGGCGGTGGGCGTGATCGTGGTCGTGAAATTGGTGCTGTCGTTGCCG
ACGACGATGTAGGGAAAGTTGTGATGGAATGGGCGAGCCGGTTTTGCGAA
CGCGAAACCTGTTTCCCCGCTGCCGACAGCGAGGAAGGTGTTCGGCTGGG
CAGGGCGCTGGTGAGGCACGTCGCACGCGATGGGGACGCGGGGCTGGTAG
GGACCAGATGGCGTCGTCGGATAAGGAGACGGCGGCACCTGCCGAGGGTT
CCGCTGTGGGTGCAAGGTTCTCATCTATGGGTGGAAGCAACCCGAGCCAA
ATCGCGGCCGCAAGCAACGCTGCTGCTAACTCCGGTCACATCCCGAACGA
CGCCAGCGCTGCAGCATCGCCGGGAGCAGCAGAAGCAGGCGCAGCCACCA
CCACCACCGCCTCCGCTGCGCCCAACCGGAAGCCAAACGCGCTCGGGTCG
AGGGGGAGGTTCTCGACCATGAACCGCGTCGTCCAATCCTTCCCGGGAAA
CGGGAACGGCCGTGGAGAACGTCTGCAAGCCAGCGCTCCAAATCGTGCTG
CCGCTAGTGCCGCAGCTGGTGCGGCAGCCAACAGTTCCGGGGAGCAGCAG
CAGGCCGCGGGAGCGGGACAGCCGCAGGAACTAACGCCCACGCAAGCGGC
TGTGCTCGCGGCGGACAACAAGCTGGAAAGGCTGTTGAACGTGGGAGGAA
TTCTCCGAGCGAAAAGTGTTGAGGAATACCCCCACGGGTTCCCGCAGGGC
ACGCCGGCATGGGACAGTGCTGGGGTAGTGGTGGGCAATCGAGATAGAGC
AACAAACTGTGGCAGAAGTGAGGGCGATAGACTTGATCTTGGCGGTGGCA
TTCGCGTGAGTGGCGGTGGGCGTGATCGTGGTCGTGAAATTGGTGCTGTC
GTTGCCGACGACGATGTAGGGAAAGTTGTGATGGAATGGGCGAGCCGGTT
TTGCGAACGCGAAACCTGTTTCCCCGCTGCCGACAGCGAGGAAGGTGTTC
GGCTGGGCAGGGCGCTGGTGAGGCACGTCGCACGCGATGGGGACGCGGGG
CTGGTAGGGACCAGGCCGCCGACGCTGCTTGTGCACGGTTTGTGTATCCG
CGTCAGTCACCGGGAGGCTGATCGCGTTCTGAGGGTCAAGCGAAGTAGTA
GTACCGCCAGTAAGAAGAATCGGTGGGCTGCAGTATGTCGGCAAGGGGTG
AAGGGATCCCATCTGCGGGTTGGAACGAAGAGAGAGGCCGCCGACGCTGC
TTGTGCACGGTTTGTGTATCCGCGTCAGTCACCGGGAGGCTGATCGCGTT
CTGAGGGTCAAGCGAAGTAGTAGTACCGCCAGTAAGAAGAATCGGTGGGC
TGCAGTATGTCGGCAAGGGGTGAAGGGATCCCATCTGCGGGTTGGAACGA
AGAGAGAG
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