prot_C-linearis_contig11.1168.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1168.1
Unique Nameprot_C-linearis_contig11.1168.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length343
Homology
[Close]
BLAST of mRNA_C-linearis_contig11.1168.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 2.800e-43
Identity = 100/214 (46.73%), Postives = 122/214 (57.01%), Query Frame = 0 
Query:  140 QELTPTQAAVLAADNKLERLLNVGGILRAK-SVEEYPHGFPQGTPAWDSAGVVVGNRDRATNCGRSEGDRLDLGGGIRVSGGGRDRGREIGAVVADDDVGKVVMEWASRFCERETC-FPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVSHREADRVLRVKR--------SSSTASKKNRWAAVCRQGVKGSHLRVGTKRE 343
            +ELTP QAAVLA D +L+ LL  GGILR   S  E   GFP+GTP W++    VG RD             D                    VV D+DV    M WA +FCE +   FP+ +S EG+ LG+ L +HV RDGD GLVGT PPTLLVHGLCIRV H E++RVLRVKR          +    ++ WA+V RQGVKG  LR+GTK+E
Sbjct: 1053 EELTPVQAAVLAVDKRLKGLLEAGGILRGTTSGRECLQGFPRGTPVWENHCGRVGGRDEGXXXXXXXXXXXD--------------------VVDDEDVAGGAMGWARKFCESDDGRFPSDESGEGISLGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRHAESNRVLRVKRHPPASGHGEDNAERHEDEWASVARQGVKGCRLRIGTKKE 1246
[Close]
BLAST of mRNA_C-linearis_contig11.1168.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.470e-41
Identity = 99/214 (46.26%), Postives = 124/214 (57.94%), Query Frame = 0 
Query:  140 QELTPTQAAVLAADNKLERLLNVGGILRAK-SVEEYPHGFPQGTPAWDSAGVVVGNRDRATNCGRSEGDRLDLGGGIRVSGGGRDRGREIGAVVADDDVGKVVMEWASRFCERETC-FPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVSHREADRVLRVKR--------SSSTASKKNRWAAVCRQGVKGSHLRVGTKRE 343
            +ELTP QAAV+A D +L+ LL  GGILR   S  E   GFP+GTP W++    VG RD  +             GG RV G           +V D+D     M WA +F   +   FP+ +S EG+ LG+ L +HV RDGD GL+GT PPTLLVHGLCIRV H E++RVLRVKR          +    ++ WAAV RQGV+G  LR+GTKRE
Sbjct: 1078 EELTPVQAAVMAVDKRLQDLLIAGGILRGTTSGRECLQGFPRGTPVWENHCGRVGGRDEGS-------------GGRRVDG--------ANDIVGDEDAAGGAMGWARKFFGVDDGRFPSDESGEGIALGKVLAKHVVRDGDVGLIGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPASGHGEDNAKRHQDEWAAVARQGVQGCRLRIGTKRE 1270
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI2.800e-4346.73Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE1.470e-4146.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:437978..439358 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1168.1mRNA_C-linearis_contig11.1168.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 437040..439358 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1168.1 ID=prot_C-linearis_contig11.1168.1|Name=mRNA_C-linearis_contig11.1168.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=343bp
MASSDKETAAPAEGSAVGARFSSMGGSNPSQIAAASNAAANSGHIPNDAS
AAASPGAAEAGAATTTTASAAPNRKPNALGSRGRFSTMNRVVQSFPGNGN
GRGERLQASAPNRAAASAAAGAAANSSGEQQQAAGAGQPQELTPTQAAVL
AADNKLERLLNVGGILRAKSVEEYPHGFPQGTPAWDSAGVVVGNRDRATN
CGRSEGDRLDLGGGIRVSGGGRDRGREIGAVVADDDVGKVVMEWASRFCE
RETCFPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVS
HREADRVLRVKRSSSTASKKNRWAAVCRQGVKGSHLRVGTKRE
back to top