mRNA_C-linearis_contig109.1099.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig109.1099.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE) HSP 1 Score: 1204 bits (3116), Expect = 0.000e+0 Identity = 878/1313 (66.87%), Postives = 939/1313 (71.52%), Query Frame = 1
Query: 1981 SRGLTREARLLLLEALAGATGRALGDVVFETT--GRGLTLQPATKKSSXXXXXXXXXXXXX-----------VIAQPDPVWFADLRATARRAWGGGLPVDSHGGVDLDSPPLALQEMDGSGXXXXXXXXXXXWVPIGARASGAGRAEVDGEGALVPEFDERIAARMAQELFLEIAEGKGPGRVSSRAQASLVRANFRSALARSRGAGPPASLSELADRTLTSFEETDLELALAAGQLVADKLKIIKP-APPATPNTKTTANADKRKXXXXXXXXXXXXXXXXXSYS----------------------------------KKDAQKDAKFTVPNTDEDSEMKAKNSSSDTVSGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAPASRAGEMGGFWAASTLLQESLACNYTAGAEIVLETMRKEGHWPRTSTYNTLLWYFRQERDARGALSMLQSLRESKYVNPDQMSYTLAIQACVWSGSCVDEAWSVVEEAEAAH---DYSFASKDLPDARLILIQAVGGDVLEGLKDMSGKGVTPDEATLLGVIKACAERGDTKGALDVLQMMRGASSS-----------------SSYPCPRPSYRSYLAALTACSRVLPAAADDDDPDKKIGDKDVEGDGAGGTVQQQQERGDWRASKEVLRMMWEDEAKRVAK--------------------------GDVAVPGTWSADLQQALSLGPSHVTMPAVPDAACYRLAMECCVACGRNDEALSLLAEMESRGLSPNEAALRALIRGFAQEGL--DDGGAVGSTAAERAERRWKGVENALGVFEELAERFDPPSSRASFEQAIDACVSHPDSLQHAGDLISRMKAVGHDLQADHYNVLIRGFGDARNLGAALSVFQTMREGVAVGGPGGGPRSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKGKEQRSRGRKYGTHALAAHLI-GAGGVGRGMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKRGGGA----KQRENQTFAEAVRDSLKRAEARRTKSNKVEEDGGAFPGNPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRQEAERLAAIXXXXXXXXXXXXNPGT--SGDGKTSAIPRSIDKPKGGFDGAAEASGTGDRRTGGALSA-HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSFSEEPSPALDEVVAGLRRKGSNSKWRSRRGSGMSAVASQPLVKRK 5607
+RGLTREARL LLEALA ATGRALG+VVFET GRGLTL P +K XXXXXXXXXXXXX ++AQPDP WF LRATARRAW GG D+ G DL++PP + E G G WVP+GARA+G GRAEVDGEGALVP FD RIAARMAQELF E+A GK GRVSSRAQASLVRA FRS LA SRGA PPASLSELADRTLTSF+ETDLELAL AGQL AD+LKI P PA+ XXXXXXXXXXXXXXXXX K K+ ++ + +S + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A PASRAGEMG FWAASTLLQESLACNYTAGAEIVL TM KEG W TSTYNTLLWYFRQERDA+GALSMLQSLRES+ V PDQ SYTLAIQACVWSGS V+EAW++VEEA+AA DYSFASKDL DARL L+QAVGGDVL GL++MS +GVT DE+T+LGVI+ACA+RGD GALD+LQMMRGA ++ CPRPSYRSYLAA GDG RGDWRA+KEVLRMMWEDEA R G +A GTWS +LQ+AL LGPSHVTMPAVPDAACY+LAMECCV+ GRNDEAL+LL+EME RGLSPNEAALRALIRGFA EG+ D GG + ERAERRW+GVENALGVFEELAERFDPPS RASFEQAIDACVSHPD LQHAGDLISRMK+VGHDLQADHYNVLIRGFGDARNLGAAL+VFQTMREGVAVGGPGGG RSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGK KEQRSRGRKYGTHALAAHLI G+GG GM +XXXXXXXXXXX XXXXXXXXXX A G GA K RE QTFAEA R L+RAE RR K +VEEDGGAF NPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKR+EAERLAA XXXXXXXXXXXX SG KT AIPRSIDKPKGGFD AAE+ + A XXXXXXXXXXXXXXXXXXXXX GS SEEPSP L+ VVAGLRRKGSNSK RSRRGSG+SAV SQPLV+RK
Sbjct: 15 NRGLTREARLRLLEALAVATGRALGNVVFETAAAGRGLTLAPLSKIKQXXXXXXXXXXXXXXXXXXXASATAIVAQPDPAWFETLRATARRAWSGGGGCDADGN-DLEAPPRLVPEAGGFGCGNGGGG----WVPVGARAAGTGRAEVDGEGALVPAFDARIAARMAQELFSEMAAGKEAGRVSSRAQASLVRAKFRSTLALSRGAAPPASLSELADRTLTSFDETDLELALQAGQLTADQLKIKNPKTTPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNVRGKERGSADVGKNKTKGREGPSSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSGQKEEKVERKAGPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLHTMSKEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAQAAATGGDYSFASKDLLDARLALVQAVGGDVLHGLREMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAAXXXXXXXXXXXXX-----XXXXXXXXSGDGV---------RGDWRAAKEVLRMMWEDEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLAWCGTWSTELQEALRLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALALLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAAERERAERRWRGVENALGVFEELAERFDPPS-RASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKAKEQRSRGRKYGTHALAAHLIRGSGG---GMVSXXXXXXXXXXXEDSGEVXXXXXXXXXXSASARRVGGNGAAGSIKNREEQTFAEAARGILRRAEERRMKVERVEEDGGAFSANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREAERLAAXXXXXXXXXXXXXXXXXXXSGSAKTVAIPRSIDKPKGGFDAAAESXXXXXXXXXXRVGALXXXXXXXXXXXXXXXXXXXXXXGSRLEPRRKPVLVKTGGGGSGVQGSLSEEPSPVLEAVVAGLRRKGSNSKGRSRRGSGLSAVPSQPLVRRK 1304
BLAST of mRNA_C-linearis_contig109.1099.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI) HSP 1 Score: 1088 bits (2813), Expect = 0.000e+0 Identity = 775/1142 (67.86%), Postives = 822/1142 (71.98%), Query Frame = 1
Query: 2437 MAQELFLEIAEGK-------------GPGRVSSRAQASLVRANFRSALARSRGAGPPASLSELADRTLTSFEETDLELALAAGQLVADKLKIIKPAPPATPNTKTTANADKRKXXXXXXXXXXXXXXXXXSYSKKDAQ---------------------------------------KDAKFTVPNTDEDSEMKAKNS----SSDTVSGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAPASRAGEMGGFWAASTLLQESLACNYTAGAEIVLETMRKEGHWPRTSTYNTLLWYFRQERDARGALSMLQSLRESKYVNPDQMSYTLAIQACVWSGSCVDEAWSVVEEAEAAH---DYSFASKDLPDARLILIQAVGGDVLEGLKDMSGKGVTPDEATLLGVIKACAERGDTKGALDVLQMMRGASSS--------------SSYPCPRPSYRSYLAALTACSRVLPAAADDDDPDKKIGDKDVEGDGAGGTVQQQQERGDWRASKEVLRMMWEDEAKRVAKGDVAVPGTWSADLQQALSLGPSHVTMPAVPDAACYRLAMECCVACGRNDEALSLLAEMESRGLSPNEAALRALIRGFAQEGLDDGGAVGSTAA--ERAERRWKGVENALGVFEELAERFDPPSSRASFEQAIDACVSHPDSLQHAGDLISRMKAVGHDLQADHYNVLIRGFGDARNLGAALSVFQTMREGVAVGGPGGGPRSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKGKEQRSRGRKYGTHALAAHLIGAGGVGRGMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKRGGGAKQRENQ--TFAEAVRDSLKRAEARRTKSNKVEEDGGAFPGNPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRQEAERLAAIXXXXXXXXXXXXNPGTSGD-----GKTSAIPRSIDKPKGGFDGAAE-ASGTGDRRTG--GALSAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSFSEEPSPALDEVVAGLRRKGSNSKWRSRRGSGMSAVASQPLVKRK 5607
MAQELF E+A GK P RVSSRAQASLVRA FRS LARSRGA PPASLS+LADRTLTSF+ETDLELAL AGQL AD+LKI P TP + +T XXXXXXXXXXXXXXXXX K+A+ + + + K K S G XXXXXXXXXXXXXXX XXXXXXXX AAPASRAGEMG FWAASTLLQESLACNYTAGAEIVL+TM EG W TSTYNT LWYFRQERDA+GALSMLQSLRES+ V PDQ SYTLAIQACVWSGS V+EAW++VEEAEA D SFASKDL DARL+L+QAVGGDVL+GLK+MS +GVT DE+T+LGVI+ACA+RGD GALD+LQMMRGA ++ CPRPSYRSYLAAL GDG RGDWRA+KEVLRMMWEDEA R AKGDVAVPGTWS +LQ+ALSLGPSHVTMPAVPDAACY+LAMECCV+ GRNDEAL LL+EME RGLSPNEAALRALIRGFA EG+ G G AA ERAERRW+GVENALGVFEELAERFDPPS RASFEQAIDACVSHPD LQHAGDLISRMK+VGHDLQADHYNVLIRGFGDARNLGAAL+VFQTMREGVAVGGPGGG RSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGK KEQRSRGRKYGTHALAAHLIG G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TFAEAVRD L+RAE RR + +VEEDGGAFP NPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKR+EAERLAA XXXXXXXXXXXX KT AIP+SIDKPKGGFD AAE A G G RR G GALSAHXXXXXXXXXXXXXXXXXXX GS SEEPSP L+ VVAGLRRKGSNSK RSRRGSG+SAV SQP+VKRK
Sbjct: 1 MAQELFSEMAAGKEAGSRQPTSPRRFAPVRVSSRAQASLVRAKFRSTLARSRGAAPPASLSDLADRTLTSFDETDLELALQAGQLTADQLKIKNPT--TTPASASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNARGKERGSADVGKNKTKGGRGQPSPAAAKGGXXXXXXXXXXXXXXXXTXXXXXXXXASGKEKLQRGGSGDAETATGGQKKEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLDTMSNEGLWATTSTYNTFLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAVATGGDSSFASKDLLDARLVLVQAVGGDVLQGLKEMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXTTAVCPRPSYRSYLAALXXXXXXXXXXX--------XXXXXXSGDGV---------RGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALGLLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAADRERAERRWRGVENALGVFEELAERFDPPS-RASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKAKEQRSRGRKYGTHALAAHLIGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFAEAVRDILRRAEERRKRVERVEEDGGAFPANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREAERLAAXXXXXXXXXXXXXXXXXXXXXXXXXAKTVAIPKSIDKPKGGFDAAAESAGGDGARRRGRVGALSAHXXXXXXXXXXXXXXXXXXXGSRLEPRRKPVLVKTGGGGSGVQ--GSLSEEPSPVLEAVVAGLRRKGSNSKGRSRRGSGLSAVPSQPMVKRK 1120
BLAST of mRNA_C-linearis_contig109.1099.1 vs. uniprot
Match: A0A6H5KDS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS3_9PHAE) HSP 1 Score: 196 bits (499), Expect = 6.890e-55 Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 1
Query: 4231 RASFEQAIDACVSHPDSLQHAGDLISRMKAVGHDLQADHYNVLIRGFGDARNLGAALSVFQTMREGVAVGGPGGGPRSRTLGWEVEEDMFAALVGACTR 4527
RASFEQAIDACVSHPD LQHAGDLISRMK+VGHDLQADHYNVLIRGFGDARNLGAAL+VFQTMREGVAVGGPGGG RSRTLGWEVEEDMFAALVGACTR
Sbjct: 9 RASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTR 107
BLAST of mRNA_C-linearis_contig109.1099.1 vs. uniprot
Match: A0A6H5L1W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W2_9PHAE) HSP 1 Score: 207 bits (526), Expect = 4.180e-53 Identity = 280/625 (44.80%), Postives = 322/625 (51.52%), Query Frame = 1
Query: 226 VRHVELTRMVLAMLVSGTATMMLLVGIAPVAEGMRAGPQHHRQGSWRSPVLTSTSISISPSSSCSSISSAFAGAGRRMHDGGLRAPRGGRDSGRESPAMKASSAKRRVVRSESYNSIPMVQAQREASRRGQERAALARKQQEEAEKAASLSG--PTLTATASAPPTTAAVPAALGGLQAPTNKRAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGIADGDAAKNVAEDVATPTPKREKXXXXXXQRKLEPVGRAEAVELLRQAVVKFRGAQVSAASYSRAPSPPGPAPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKKNAERGTE-VSVAVPATXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGTV--------------AAEEFAELAARCLGSAVPEIALEA---HSLYVRAA--------------------NXXXXXXXXXXXXXXQDAEISLLVTAARAHIAMGGVLDGLALLDDATDIGGGFGGGAAAALRARGKWGGDGEAGGGLARLGDDDASAVAEELCVSGGSLGLRAALRLRERLSEE 1980
+RH E + +A V+ TAT+ LL+G A VAEGMR P+ ++ SW+ S SP SS SAF+G R+ DG + GG +GR M+A SAKRRV RS+ +NSIPMVQAQR S +RA LAR+Q A L G PT TA A++ P+A+ G Q K+ AA GIA K A+ T ++ K +R LEP+ RA+AVELLRQAVVK+RGAQVSAAS P SS XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX E GT +S + P +SG+V AAEEFAELAARCLGSA+PEIALEA HSLYVRA + DAE+SLLVTAARAHIAMGGVLDG+AL+DDAT IGG G AAAALRA G+WGGDG AG GLARLGD DAS VAEELCVSGG GLRAALRLRERL+EE
Sbjct: 1 MRHFE-RNIQMAAAVTATATLYLLLGTAAVAEGMRVSPR--QRASWQR--------STSPLSS-----SAFSGR-RKAGDGFEASAAGGAAAGRRGMGMRAFSAKRRV-RSDVHNSIPMVQAQRGVS----QRATLARQQXXXXGGAGPLFGVSPTRTAEAASSSGXXXAPSAVAGSQ----KKGVAAQGLAAKRK---------------------GIA-----KKTAQAPTTAKTRKRKGRGWRGRR-LEPIARADAVELLRQAVVKYRGAQVSAAS-----------PTSSSXXXXXXXXXXPVASXXXXXXXXXXXXXXXXXXXXXXXXXXXAYGGSDGTSSYASISDGVVVIGRGVGSXXXXXXXXX--------------------SNGGETGTSRLSSSAPIPPASGDGANAGDTRSSTGNTNIDTSVRVESGSVGSGHDSTAVAAAAVAAEEFAELAARCLGSALPEIALEASVAHSLYVRAEASGLQPRTTALLPEYPLTTDDVDTQDDDDGHWRRRWDAEVSLLVTAARAHIAMGGVLDGIALIDDATAIGG-DGASAAAALRAAGRWGGDGVAGAGLARLGDGDASTVAEELCVSGGDTGLRAALRLRERLAEE 540 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig109.1099.1 >prot_C-linearis_contig109.1099.1 ID=prot_C-linearis_contig109.1099.1|Name=mRNA_C-linearis_contig109.1099.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1878bp MGYLCLDESEVFSFHDLCVHRAAERKPRGQEGRVKGLSLGGFCVLVRSTAback to top mRNA from alignment at C-linearis_contig109:160630..177644+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig109.1099.1 ID=mRNA_C-linearis_contig109.1099.1|Name=mRNA_C-linearis_contig109.1099.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=17015bp|location=Sequence derived from alignment at C-linearis_contig109:160630..177644+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig109:160630..177644+ >mRNA_C-linearis_contig109.1099.1 ID=mRNA_C-linearis_contig109.1099.1|Name=mRNA_C-linearis_contig109.1099.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=11268bp|location=Sequence derived from alignment at C-linearis_contig109:160630..177644+ (Chordaria linearis ClinC8C monoicous)back to top |