mRNA_C-linearis_contig107.1054.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1054.1
Unique NamemRNA_C-linearis_contig107.1054.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 4.090e-107
Identity = 193/436 (44.27%), Postives = 264/436 (60.55%), Query Frame = 1
Query:   22 EGEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVL--------ILTVHVDD---KLFVTLNRDFTTVDLGELSFFTGCAVIQDTEKGVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA----------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI 1176
            EG + ++S W  + K++KDG I K K RLVA+GF Q   V+Y  + +P P++ASIK++LAVAN+   K  H DVKQAFT A LD  V ++LP GCGE S K V+ ++A+YGLKQSG  W     + LV  +  EQCK DPCVFR +++  V          IL    DD   +L  +LN+ F T DLGE  +F GCAV +D E G  +I+Q  +I+++  RFDV +T+  PAS G + G +++ E GG WP +EA+GS++W+  +SRP+I+ A RAVA                                        +Y D++YA+ A+DRRSVSG+A T+G   +S  S  Q IV+LS+TEAE +A G+GVKE LF ++V SF+ P  S  +I    DN+GA+ L  N LSSAR+KHIDVR+HFIR L  SG I
Sbjct:   40 EGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDI 473          
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 1.630e-104
Identity = 191/436 (43.81%), Postives = 267/436 (61.24%), Query Frame = 1
Query:   22 EGEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVLILTVHVDD-----------KLFVTLNRDFTTVDLGELSFFTGCAVIQDTEKGVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA----------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI 1176
            EG + ++S W  S K++K+G I   K RLVA+GF Q   V+Y  + +P P++ASIK++LAVAN+ G    H DVKQA+T A LD  V +KLP GCG+ S K  + ++A+YGLKQSG  W     + LV  +  EQCK DPCVFR + +  VV+I+ ++VDD           +L  +LN+ F T +LGE  +F GCA+ +D E G  +I+Q  +I+++ +RFDV +T+R PA+ GA+ G ++E E GG WP +EA+GS++W+  +SRP+++ A RAVA                                        +Y D++YA+  +DRRSVSG+A T+G   VS  S  Q IV+LS+TEAE +A G+GVKE LF ++V SF+ P  S  +I    DN+GAI L  N LSS RTKHIDVR+HFIR L  SG I
Sbjct:  777 EGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDI 1210          
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 3.350e-103
Identity = 191/436 (43.81%), Postives = 267/436 (61.24%), Query Frame = 1
Query:   22 EGEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVLILTVHVDD-----------KLFVTLNRDFTTVDLGELSFFTGCAVIQDTEKGVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA----------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI 1176
            EG + ++S W  S K++K+G I   K RLVA+GF Q   V+Y  + +P P++ASIK++LAVAN+ G    H DVKQA+T A LD  V +KLP GCG+ S K  + ++A+YGLKQSG  W     + LV  +  EQCK DPCVFR + +  VV+I+ ++VDD           +L  +LN+ F T +LGE  +F GCA+ +D E G  +I+Q  +I+++ +RFDV +T+R PA+ GA+ G ++E E GG WP +EA+GS++W+  +SRP+++ A RAVA                                        +Y D++YA+  +DRRSVSG+A T+G   VS  S  Q IV+LS+TEAE +A G+GVKE LF ++V SF+ P  S  +I    DN+GAI L  N LSS RTKHIDVR+HFIR L  SG I
Sbjct: 1156 EGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDI 1589          
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 4.350e-103
Identity = 191/436 (43.81%), Postives = 267/436 (61.24%), Query Frame = 1
Query:   22 EGEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVLILTVHVDD-----------KLFVTLNRDFTTVDLGELSFFTGCAVIQDTEKGVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA----------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI 1176
            EG + ++S W  S K++K+G I   K RLVA+GF Q   V+Y  + +P P++ASIK++LAVAN+ G    H DVKQA+T A LD  V +KLP GCG+ S K  + ++A+YGLKQSG  W     + LV  +  EQCK DPCVFR + +  VV+I+ ++VDD           +L  +LN+ F T +LGE  +F GCA+ +D E G  +I+Q  +I+++ +RFDV +T+R PA+ GA+ G ++E E GG WP +EA+GS++W+  +SRP+++ A RAVA                                        +Y D++YA+  +DRRSVSG+A T+G   VS  S  Q IV+LS+TEAE +A G+GVKE LF ++V SF+ P  S  +I    DN+GAI L  N LSS RTKHIDVR+HFIR L  SG I
Sbjct: 1176 EGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDI 1609          
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 5.440e-103
Identity = 191/436 (43.81%), Postives = 267/436 (61.24%), Query Frame = 1
Query:   22 EGEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVLILTVHVDD-----------KLFVTLNRDFTTVDLGELSFFTGCAVIQDTEKGVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA----------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI 1176
            EG + ++S W  S K++K+G I   K RLVA+GF Q   V+Y  + +P P++ASIK++LAVAN+ G    H DVKQA+T A LD  V +KLP GCG+ S K  + ++A+YGLKQSG  W     + LV  +  EQCK DPCVFR + +  VV+I+ ++VDD           +L  +LN+ F T +LGE  +F GCA+ +D E G  +I+Q  +I+++ +RFDV +T+R PA+ GA+ G ++E E GG WP +EA+GS++W+  +SRP+++ A RAVA                                        +Y D++YA+  +DRRSVSG+A T+G   VS  S  Q IV+LS+TEAE +A G+GVKE LF ++V SF+ P  S  +I    DN+GAI L  N LSS RTKHIDVR+HFIR L  SG I
Sbjct: 1319 EGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDI 1752          
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 4.940e-99
Identity = 186/443 (41.99%), Postives = 263/443 (59.37%), Query Frame = 1
Query:   22 EGEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVLILTVHVDD-----------KLFVTLNRDFTTVDLGELSFFTGCAVIQDTEKGVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA----------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTT-------EAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI 1176
            EG + ++S W  S K++K+G I   K RLVA+GF Q   V+Y  + +P P++ASIK++LAVAN+ G    H DVKQA+T A LD  V +KLP GCG+ S +  + ++A+YGLKQSG  W     + LV  +  EQCK DPCVFR + +  VV+I+ ++VDD           +L  +L++ F T +L E  +F GCA+ +D E G  +I+Q  +I+++ KRFDV +T+R PAS G + G +++ E GG WP +EA+GS++W+  +SRP+++ A RAVA                                        +Y D++YA+  +DRRSVSG+A T+G   VS  S  Q IV+LS+T       EAE    G+ VKE LF ++V SF+ P  S  +I   +DN+GA+ L  N LSS RTKHIDVRFHFIR L  SG I
Sbjct:  331 EGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQV-LDNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSGDI 770          
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 3.080e-97
Identity = 181/440 (41.14%), Postives = 250/440 (56.82%), Query Frame = 1
Query:   16 VQEGEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVLILTVHVDDKLFVTLNR-----------DFTTVDLGELSFFTGCAVIQDTEKGVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA------------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI 1176
            + EG   I++ WV   K+D+ G I K K RLVAKGF Q+ GV+Y +TF+PT  AASI++V+A+A +   +  HLD++QAF Q+ LD  V+MKLP GC  +SGK V L K+LYGLKQ+   +   LV  L+ +   EQ  +DPCV R +   +V+ I+ +HVDD L+    R              T +LGE+ FF GCA  +D E G  +I+Q+++I ++ +RF++  T+  PAS   +  +  E E  G  P++E +G L+W+   +RPE +NA R VA                                          +Y D+++A KA DRRSVSG  V +    VSW S  QK V+LST+EAE +A+GDGVKE LF   +   L PS   + I  F DNEGAI LA N LSS+R+KHIDVR HF+R L   G I
Sbjct:  251 IPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIG-FEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVI 689          
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 9.540e-97
Identity = 194/436 (44.50%), Postives = 264/436 (60.55%), Query Frame = 1
Query:   25 GEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVL--------ILTVHVDD---KLFVTLNRDFTTVDLGELSFFTGCAVIQDTEKGVT-KINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA----------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI 1176
            G K ++S W  + K++KDG I K K RLVA+GF Q   V+Y  + +P P++ASIK++LAVAN+   K  H DVKQAFT A LD  V ++LP GCGE S K V+ ++A+YGLKQSG  W     + LV  +  EQCK DPCVFR +++  V          IL    DD   +L  +LN+ F T DLGE  +F GCAV +D E G+T +I+Q  +I+ +  RFDV +T+  PAS G + G +++ E GG WP +EA+GS++W+  +SRP+I+ A RAVA                                        +Y D++YA+ A+DRRSVSG+A T+G   +S  S  Q IV+LS+TEAE +A G+GVKE LF ++V SF+ P  S  +I    DN+GA+ L  N LSSAR+KHIDVR+HFIR L  SG I
Sbjct: 1430 GLKPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGMTLRISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDI 1862          
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 311 bits (798), Expect = 3.470e-95
Identity = 180/433 (41.57%), Postives = 255/433 (58.89%), Query Frame = 1
Query:   25 GEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVLILTVHVDD-----------KLFVTLNRDFTTVDLGELSFFTGCAVIQDTEKGVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA----------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASG 1170
            G+  I   W    K++K+G I   K R VA+GF Q   +    + +P P++ASIK++LAVAN+ G    H DVKQA+T A LD  V +KLP GCG+ S K  + ++A+YGLKQSG  W     + LV  +  EQCK DPCVFR + +  VV+I+ ++VDD           +L  +LN+ F T +LGE  +F GCA+ +D + G  +I+Q  +I+++ +RFDV +T+R PA+ GA+ G ++E + GG WP +EA+GS++W+  +SRP+++ A RAVA                                        +Y D+ YA+  +DRRSVS +A T+G   VS  S A+ IV+LS+TEAE +A G+GVKE LF ++V SF+ P     +I    DN+GAI L  N LSS   KHIDVRFHFIR L  SG
Sbjct:  373 GDVFIRRRW----KTNKEGKIDTLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADT-EDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSG 799          
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 5.240e-95
Identity = 179/436 (41.06%), Postives = 255/436 (58.49%), Query Frame = 1
Query:   22 EGEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYNQTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPGGCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVFRLIREGKVVLILTVHVDDKLFV-----------TLNRDFTTVDLGELSFFTGCAVIQDTEKGVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKEAMGSLLWLVVWSRPEIANATRAVA----------------------------------------LYTDSNYAEKADDRRSVSGVAVTLGNATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKTITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI 1176
            EG KA+++ WV   K+D+ G IT  K RLVA+GF Q  G +Y+ + +  PA +SIK+ +A A + G  T H D+KQA+T A +   + +++  G G ++GK +++++ALYGLKQSG  W       LV+    EQC+ DPCVFR I +GKVV I+ ++VDD ++V           +L +     DLGE +++ GCA+ +D E G T ++QK +I  L  RF +TTTA  PA   A  G +++ EPG   P ++A+G L+W   ++RP+IA A  AV                                         +Y D++YA++   RRSV+G+AVT+G   VS  S  Q+IV+LST+EAE +A G+GVKE LF ++V SF+ P  S   I    DN+GAI+L  N  SSAR+KHIDVRFHFIREL  SG I
Sbjct:  776 EGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVD-SGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRI 1210          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE4.090e-10744.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.630e-10443.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.350e-10343.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE4.350e-10343.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.440e-10343.81Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE4.940e-9941.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE3.080e-9741.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LGF7_9PHAE9.540e-9744.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE3.470e-9541.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE5.240e-9541.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:530060..531355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score231.5
Seed ortholog evalue6.8e-58
Seed eggNOG ortholog6334.EFV57947
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size1176
Cds size1176
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927410.3036416-CDS-C-linearis_contig107:530059..5308821622927410.3036416-CDS-C-linearis_contig107:530059..530882Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 530060..530882 +
1690879685.571777-CDS-C-linearis_contig107:530059..5308821690879685.571777-CDS-C-linearis_contig107:530059..530882Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 530060..530882 +
1622927410.3189461-CDS-C-linearis_contig107:531002..5313551622927410.3189461-CDS-C-linearis_contig107:531002..531355Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 531003..531355 +
1690879685.5815458-CDS-C-linearis_contig107:531002..5313551690879685.5815458-CDS-C-linearis_contig107:531002..531355Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 531003..531355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1054.1prot_C-linearis_contig107.1054.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 530060..531355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1054.1

>prot_C-linearis_contig107.1054.1 ID=prot_C-linearis_contig107.1054.1|Name=mRNA_C-linearis_contig107.1054.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=392bp
WYCPVVQEGEKAINSGWVLSLKSDKDGSITKPKGRLVAKGFMQREGVNYN
QTFAPTPAAASIKIVLAVANQMGYKTYHLDVKQAFTQADLDCRVVMKLPG
GCGELSGKYVELKKALYGLKQSGLLWNDLLVEKLVNVHKMEQCKTDPCVF
RLIREGKVVLILTVHVDDKLFVTLNRDFTTVDLGELSFFTGCAVIQDTEK
GVTKINQKTFIETLAKRFDVTTTARYPASVGANQGARQEGEPGGTWPYKE
AMGSLLWLVVWSRPEIANATRAVALYTDSNYAEKADDRRSVSGVAVTLGN
ATVSWISSAQKIVTLSTTEAECVALGDGVKETLFAKSVASFLVPSLSEKT
ITAFVDNEGAINLASNSLSSARTKHIDVRFHFIRELVASGTI
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mRNA from alignment at C-linearis_contig107:530060..531355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1054.1 ID=mRNA_C-linearis_contig107.1054.1|Name=mRNA_C-linearis_contig107.1054.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1296bp|location=Sequence derived from alignment at C-linearis_contig107:530060..531355+ (Chordaria linearis ClinC8C monoicous)
TGGTATTGCCCGGTTGTACAAGAGGGCGAAAAGGCGATTAACTCTGGGTG GGTGCTTTCCTTGAAGTCTGACAAGGATGGCAGCATTACGAAACCGAAGG GTAGACTGGTAGCGAAGGGATTCATGCAGCGAGAAGGCGTGAATTACAAC CAAACTTTTGCGCCAACACCCGCAGCGGCTTCAATCAAAATAGTATTGGC AGTTGCCAATCAGATGGGATACAAGACATACCATCTAGACGTCAAACAGG CGTTCACTCAGGCGGATCTCGACTGTAGGGTCGTGATGAAACTTCCAGGT GGTTGTGGAGAACTATCTGGCAAGTACGTAGAACTCAAGAAGGCACTGTA TGGCCTTAAGCAGAGCGGTTTGCTGTGGAATGATTTGCTGGTTGAGAAGT TGGTCAATGTGCATAAAATGGAACAATGCAAGACCGACCCTTGTGTTTTT CGTCTGATCCGGGAGGGCAAAGTAGTTCTAATCCTCACGGTGCACGTGGA TGACAAGCTCTTTGTCACGCTCAACCGAGACTTCACGACTGTTGACCTCG GGGAACTTTCTTTCTTCACGGGGTGTGCGGTAATTCAGGATACAGAAAAA GGGGTTACCAAGATCAACCAAAAGACGTTTATCGAGACGCTTGCGAAACG TTTCGATGTGACCACGACTGCCCGTTATCCCGCTTCTGTCGGTGCAAACC AAGGAGCAAGGCAAGAGGGCGAGCCCGGTGGTACATGGCCCTACAAGGAG GCCATGGGTTCACTGTTGTGGCTGGTCGTATGGTCGAGACCGGAAATCGC CAACGCAACGCGAGCTGTTGCTCGTCACTCGGCTAACCCTACTGAGAAGG ATTGGATAGCGGTGCTCCAGATCATCCAGTATCTACTGGGCACGAAGGAT CTGAGTCTCACGTTTGAGCGGGGGCTCGATTTTGATCTGTCAGTGTATAC CGACTCGAATTACGCTGAAAAGGCCGACGACAGGCGATCTGTGTCGGGGG TAGCTGTAACCCTTGGCAATGCTACTGTTAGTTGGATTAGCAGTGCGCAG AAGATTGTTACACTCTCGACCACCGAGGCCGAGTGTGTGGCACTCGGGGA TGGAGTTAAAGAAACTCTATTCGCTAAGTCTGTAGCGTCATTCCTCGTAC CATCGCTTTCTGAGAAAACGATAACGGCATTCGTAGACAACGAGGGTGCC ATCAACCTAGCATCCAACTCACTTAGTTCAGCGAGGACTAAGCACATTGA TGTGCGCTTTCACTTCATTCGGGAGTTGGTTGCGTCGGGTACGATT
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Coding sequence (CDS) from alignment at C-linearis_contig107:530060..531355+

>mRNA_C-linearis_contig107.1054.1 ID=mRNA_C-linearis_contig107.1054.1|Name=mRNA_C-linearis_contig107.1054.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at C-linearis_contig107:530060..531355+ (Chordaria linearis ClinC8C monoicous)
TGGTATTGCCCGGTTGTACAAGAGGGCGAAAAGGCGATTAACTCTGGGTG
GGTGCTTTCCTTGAAGTCTGACAAGGATGGCAGCATTACGAAACCGAAGG
GTAGACTGGTAGCGAAGGGATTCATGCAGCGAGAAGGCGTGAATTACAAC
CAAACTTTTGCGCCAACACCCGCAGCGGCTTCAATCAAAATAGTATTGGC
AGTTGCCAATCAGATGGGATACAAGACATACCATCTAGACGTCAAACAGG
CGTTCACTCAGGCGGATCTCGACTGTAGGGTCGTGATGAAACTTCCAGGT
GGTTGTGGAGAACTATCTGGCAAGTACGTAGAACTCAAGAAGGCACTGTA
TGGCCTTAAGCAGAGCGGTTTGCTGTGGAATGATTTGCTGGTTGAGAAGT
TGGTCAATGTGCATAAAATGGAACAATGCAAGACCGACCCTTGTGTTTTT
CGTCTGATCCGGGAGGGCAAAGTAGTTCTAATCCTCACGGTGCACGTGGA
TGACAAGCTCTTTGTCACGCTCAACCGAGACTTCACGACTGTTGACCTCG
GGGAACTTTCTTTCTTCACGGGGTGTGCGGTAATTCAGGATACAGAAAAA
GGGGTTACCAAGATCAACCAAAAGACGTTTATCGAGACGCTTGCGAAACG
TTTCGATGTGACCACGACTGCCCGTTATCCCGCTTCTGTCGGTGCAAACC
AAGGAGCAAGGCAAGAGGGCGAGCCCGGTGGTACATGGCCCTACAAGGAG
GCCATGGGTTCACTGTTGTGGCTGGTCGTATGGTCGAGACCGGAAATCGC
CAACGCAACGCGAGCTGTTGCTCTGGTATTGCCCGGTTGTACAAGAGGGC
GAAAAGGCGATTAACTCTGGGTGGGTGCTTTCCTTGAAGTCTGACAAGGA
TGGCAGCATTACGAAACCGAAGGGTAGACTGGTAGCGAAGGGATTCATGC
AGCGAGAAGGCGTGAATTACAACCAAACTTTTGCGCCAACACCCGCAGCG
GCTTCAATCAAAATAGTATTGGCAGTTGCCAATCAGATGGGATACAAGAC
ATACCATCTAGACGTCAAACAGGCGTTCACTCAGGCGGATCTCGACTGTA
GGGTCGTGATGAAACTTCCAGGTGGTTGTGGAGAACTATCTGGCAAGTAC
GTAGAACTCAAGAAGGCACTGTATGGCCTTAAGCAGAGCGGTTTGCTGTG
GAATGATTTGCTGGTTGAGAAGTTGGTCAATGTGCATAAAATGGAACAAT
GCAAGACCGACCCTTGTGTTTTTCGTCTGATCCGGGAGGGCAAAGTAGTT
CTAATCCTCACGGTGCACGTGGATGACAAGCTCTTTGTCACGCTCAACCG
AGACTTCACGACTGTTGACCTCGGGGAACTTTCTTTCTTCACGGGGTGTG
CGGTAATTCAGGATACAGAAAAAGGGGTTACCAAGATCAACCAAAAGACG
TTTATCGAGACGCTTGCGAAACGTTTCGATGTGACCACGACTGCCCGTTA
TCCCGCTTCTGTCGGTGCAAACCAAGGAGCAAGGCAAGAGGGCGAGCCCG
GTGGTACATGGCCCTACAAGGAGGCCATGGGTTCACTGTTGTGGCTGGTC
GTATGGTCGAGACCGGAAATCGCCAACGCAACGCGAGCTGTTGCTCTGTA
TACCGACTCGAATTACGCTGAAAAGGCCGACGACAGGCGATCTGTGTCGG
GGGTAGCTGTAACCCTTGGCAATGCTACTGTTAGTTGGATTAGCAGTGCG
CAGAAGATTGTTACACTCTCGACCACCGAGGCCGAGTGTGTGGCACTCGG
GGATGGAGTTAAAGAAACTCTATTCGCTAAGTCTGTAGCGTCATTCCTCG
TACCATCGCTTTCTGAGAAAACGATAACGGCATTCGTAGACAACGAGGGT
GCCATCAACCTAGCATCCAACTCACTTAGTTCAGCGAGGACTAAGCACAT
TGATGTGCGCTTTCACTTCATTCGGGAGTTGGTTGCGTCGGGTACGATTT
GTATACCGACTCGAATTACGCTGAAAAGGCCGACGACAGGCGATCTGTGT
CGGGGGTAGCTGTAACCCTTGGCAATGCTACTGTTAGTTGGATTAGCAGT
GCGCAGAAGATTGTTACACTCTCGACCACCGAGGCCGAGTGTGTGGCACT
CGGGGATGGAGTTAAAGAAACTCTATTCGCTAAGTCTGTAGCGTCATTCC
TCGTACCATCGCTTTCTGAGAAAACGATAACGGCATTCGTAGACAACGAG
GGTGCCATCAACCTAGCATCCAACTCACTTAGTTCAGCGAGGACTAAGCA
CATTGATGTGCGCTTTCACTTCATTCGGGAGTTGGTTGCGTCGGGTACGA
TT
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