mRNA_C-linearis_contig107.1037.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1037.1
Unique NamemRNA_C-linearis_contig107.1037.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:301070..304920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002650.1
Exons6
Model size1576
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1037.1prot_C-linearis_contig107.1037.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 301857..304899 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927408.065138-UTR-C-linearis_contig107:301069..3018561622927408.065138-UTR-C-linearis_contig107:301069..301856Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 301070..301856 -
1690879683.887585-UTR-C-linearis_contig107:301069..3018561690879683.887585-UTR-C-linearis_contig107:301069..301856Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 301070..301856 -
1622927408.139142-UTR-C-linearis_contig107:304899..3049201622927408.139142-UTR-C-linearis_contig107:304899..304920Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 304900..304920 -
1690879683.956796-UTR-C-linearis_contig107:304899..3049201690879683.956796-UTR-C-linearis_contig107:304899..304920Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 304900..304920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927408.0793102-CDS-C-linearis_contig107:301856..3020031622927408.0793102-CDS-C-linearis_contig107:301856..302003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 301857..302003 -
1690879683.898252-CDS-C-linearis_contig107:301856..3020031690879683.898252-CDS-C-linearis_contig107:301856..302003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 301857..302003 -
1622927408.0915718-CDS-C-linearis_contig107:302312..3024391622927408.0915718-CDS-C-linearis_contig107:302312..302439Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 302313..302439 -
1690879683.9072602-CDS-C-linearis_contig107:302312..3024391690879683.9072602-CDS-C-linearis_contig107:302312..302439Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 302313..302439 -
1622927408.101793-CDS-C-linearis_contig107:302763..3028551622927408.101793-CDS-C-linearis_contig107:302763..302855Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 302764..302855 -
1690879683.9171019-CDS-C-linearis_contig107:302763..3028551690879683.9171019-CDS-C-linearis_contig107:302763..302855Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 302764..302855 -
1622927408.110883-CDS-C-linearis_contig107:303274..3034241622927408.110883-CDS-C-linearis_contig107:303274..303424Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 303275..303424 -
1690879683.9282773-CDS-C-linearis_contig107:303274..3034241690879683.9282773-CDS-C-linearis_contig107:303274..303424Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 303275..303424 -
1622927408.1203694-CDS-C-linearis_contig107:304478..3045681622927408.1203694-CDS-C-linearis_contig107:304478..304568Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 304479..304568 -
1690879683.937804-CDS-C-linearis_contig107:304478..3045681690879683.937804-CDS-C-linearis_contig107:304478..304568Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 304479..304568 -
1622927408.1299713-CDS-C-linearis_contig107:304737..3048991622927408.1299713-CDS-C-linearis_contig107:304737..304899Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 304738..304899 -
1690879683.947403-CDS-C-linearis_contig107:304737..3048991690879683.947403-CDS-C-linearis_contig107:304737..304899Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 304738..304899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1037.1

>prot_C-linearis_contig107.1037.1 ID=prot_C-linearis_contig107.1037.1|Name=mRNA_C-linearis_contig107.1037.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=256bp
MPSHGKKRGGRRCFLLLCVSVSLSGTVGFFQHHHHANFQRVKASFKRPAC
TALKAALEGSGSSSDSVDDPDQEGSDLMSELMMEVNQRESLLRREGVRQL
KRPSALLPPHTVLEHVLSSLQNPDYPTEGAGWEKAWLFSALDYEVSRGPI
DFRRDWTDEDDVQPRYLPRESFVAVMQQALPFLASMDSFHMAGEPVFDDD
DHRVTFQIRVVADETETAVNWAEIGFRLSKVRDGSHKDCWLMERAIITDS
GHDPK*
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mRNA from alignment at C-linearis_contig107:301070..304920-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1037.1 ID=mRNA_C-linearis_contig107.1037.1|Name=mRNA_C-linearis_contig107.1037.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3851bp|location=Sequence derived from alignment at C-linearis_contig107:301070..304920- (Chordaria linearis ClinC8C monoicous)
CTCGTACACACGCCAAAGAAAATGCCGAGTCATGGGAAGAAGCGTGGAGG
AAGGCGTTGTTTTCTGCTGCTCTGTGTGTCAGTGAGTCTTAGCGGGACGG
TGGGATTCTTTCAACACCACCATCATGCAAATTTCCAGAGGGTCAAAGCA
TCATTCAAAAGACCAGCATGCACAGCCTTGAAGGTGAGACATGAAGGCAT
CTCCACTCCTGGGGACAGCAGTACACGAGGATGTAGAGGGTGCACGCTTG
CCCCTCGCCACTTCATAGATACCGCACGGTGTGCACCAAGTTATGGCATT
TGTGCATCGTTCGGAGACCTTTACATCCTCTTGTTGCTTGCAACTTGATC
AGGCCGCCTTGGAAGGCAGCGGCAGCAGCAGCGATAGCGTGGACGATCCC
GACCAAGAAGGGTCAGATTTGATGTCGGAGCTCATGATGGAGGTAAGGCA
TGGCGTCCATTGCTACTGCTGTAAACTATGCTGCAATAGAGAATGTCTCG
TGTTGGACAGCGGATGTGAGGCACATGATGACCCGACCACCCTTGCTTCC
GCCCGTGTCTTTCCACGCGTGCTGCGGACGGGAACGTGGGTACAGCAGTA
GCATGCTGATGCTGAAATCGACTTCGAAAAGACGGCAGTGACACGAGGGC
AGTATCAAACTGCTCTGCTCTGTTGCTTGTACACACGCTCACACACGCAT
TGAGTACAGGTCGATGCAAATACATGCACATACTGCATATATGACCGCCT
GCATTCCGTCTCCGCCGCGGGTTTGTTGGGACGGTCTATTGAGCAGCACT
CCAGACAGCAGTGCGCAGTGCAGTAGGTCGACTTCGGGGATTTCTGTCTG
TGACGCTCGGATTTGTTGCAGACAGGATTTTTCTTGACGGGTCAACTTAT
TGCTGTGTAGTTCGATTGGGCGTTCTCTATATTGATTCGTGGCGCAGGTT
GCCTCACCCTCGTGTGTTTTTGTGGTTTTATTTTGGTTTTCTGCTAGCTA
CGTTATTATTCGTGGTGCAGGTTGCCTCACCCTTATGTGGTTTTTTTGGT
TTTCTTTTTGGCTTTCTGCTAGCCATGTTATATTGTTTGCGTACTGATGG
TAGGCTCCTTGCACTCTGTGACCACGGGGATTGGCCGTGTCTGTTGGATC
AGTACGGACAAAGGGAGTACTGGGTGGAGAGACCGGGATGGTTCAAAATG
TGAAGACAACAACAACAACAACATTCTACAGCAGATAGATGTGCCACCGT
AACCACGGGCGTAGGGCTCCGAAGCAGTTATTCCAGCTGCTCGAAACTGA
AATGCGGCACTGCTGGTATTGCCTCGCCGTGTCGCGGCTTTTCTCTAGTT
GTTGCTCTCTGTGTCATACTTTGAAGTGCGAACAAACTGTAGAACTTGTT
ATCGATACCCTCTCGGATTAGGCATGTAAAACGACGCGGACATCGTTGCC
GACTTGTACAAATTACCCCCCCGGACATCATGTCTCTCACGACAAGGTGA
ATCAACGGGAGAGTTTGCTGCGAAGAGAAGGGGTTCGTCAGCTCAAGCGG
CCGTCTGCTCTCCTTCCTCCGCACACGGTGCTCGAACATGTGTTAAGCTC
ACTTCAAAATCCCGACTATCCTACAGAGGGCGCCGGATGGGAGAAGGTGA
TTGTGGTGTGCGTGTTCTTTTCTTCAGTACCTAGAGTATTTTGCCATCTA
GAACCGCGCGCGCATTGCCACTTCGTTGCACTTTCGGTAGCCCCACACCG
TACAGTGGCGGGCAGATATTGATTGTTTCGCATCTTCGCAGGTCTCACAT
TTATTTAGGTGTGAACACAGCAATAGACCACGGCATCTTCGTACTGTAGT
AGCACTGCTACGCTGTAGAAACGTATGGTTGGTTGTGGGTTCGACCTCCC
AAAACAACATGGAGTGGCGCTCACTCGTGGTAAAGAGCTGCGGGCCTTTT
CCTTGGACGAAATCTACGTTCGCTTTGTGCCTTGAGGCGTTGGATGCGCA
GCGGGCTTGTCGCTCCAAGTGTGTACCTTGCGTCTCGAACACGAATAATC
AACAATATGCGACAGGCTTGGCTGTTCAGTGCACTGGACTACGAGGTTAG
CCGTGGGCCTATCGATTTTCGCCGCGATTGGACGGACGAAGACGACGTAC
AACCGAGGTGAGTAAAGCCGACTGATTGGATGTAGAAGTATCGCACGCCA
CTCCACACCTGTCTAAGAAAGCTTGTGGTGCTCAGCTGCCTTTCGTCGAT
CGATGCTCTCGTCTAGTTTCGTGTTTGTGCAACCCGGTTCAGCATGCTCG
TTCGAGTTTTAAAGCTCGTGCTTAAAAGAGACTGGACTGCTCTGTTCGCG
ACAATGGATGAGGACCCCCCCTGCCCCCCCGCCTGTAGGAAGTTCATGAA
ATGGGCTGCTGTTGAGCCTACAGGACGTGGGCCTTGCGGTGCGAATCAAA
CCTGTTCATTGATTTGGTGGCCGGTCCTCAGGTATCTACCTCGAGAGTCT
TTCGTGGCTGTGATGCAGCAGGCTCTTCCGTTCCTCGCTTCGATGGACTC
GTTTCACATGGCTGGAGAGCCAGTTTTCGATGACGATGATCATCGAGTCA
CCTTCCAGGTGAGTCTTGCTGCTGTAGTCTAATTCAGAGTTGCCCGGGGT
GAAGAGACAACCATTGCACATTTGGGGGAAGAAATCTGCGGTTTGGCGGC
GACACCTGCGCGCAGAGAGTACGCACGAGGGTAGTCTTATCGGTGGCTGA
AAGGTTTGTACGAAGTAAACCGTACATATGGGTTTGTTTGTGCAGCTTCT
TTCACGCTACATATCCGCCGGGGTGTGTGAACAAGGTAGTCCCAAGTATT
CCAATTCACTACTGCTTCGTCGAACCAAACCTCAAACCTGTTTCACCCAT
TCCTGCATGTGGCACAGATACGCGTAGTGGCTGACGAGACGGAGACGGCG
GTGAACTGGGCCGAAATTGGCTTCCGGTTATCCAAAGTCAGAGACGGTAG
CCACAAGGACTGTTGGCTTATGGAAAGAGCCATCATCACGGATTCTGGCC
ACGACCCGAAATGATATATCCTGTTTTGGTTGGGCCTGGGATGCTGCTTG
GTTGTAGAGGCTGCGATTTTACCGCAATTAAAAAAATCGCGGCTCGTCCA
TTTGTACGACGAATTGGCGGGCGAATCGTGTTTTATGTTTTGATAGACTC
ACGCAGCCGTCGGTCGGAAGTTGGTTTTTAGTAAACCGCTGACAAAGGGC
CGCCAACGATCTCTCAGAAAATGCTGGGGACGGGGGGTCAAGTCGTTATT
GTTGAGCAATACGACAATAATGCCCATTTGGCTGTGCTGCAACGTGCTAC
CAGTTCATCGTAAGTACACCATGTCCCTCTCCTCTTAGTGGCTGGAGTTT
GTCCCATCCCCGGAGAGGGCAGTAAAGGTAAGTCTCGCCCGCTGCAACAG
AGAGATTTGCATCTACGATGAAAAATAATCTTCGTTCGCAGTTACCCATA
TCCTGGTCAAAGGGCTGATGGCCCGCCCGAAAAGCGCATGTAGAAGCACA
TGTGGTGAAGCTGTATTGCTTTATCACATGCGTACTGCCGCCTGCAGTGA
TTGTTCGCATGCGTTTCTTCAGCGCAGGTGCTTCATGAACGCGCCAGAGA
GCACGCACTCACGTCCACCGGCATCCGCACCCAGTGCCTTGCCGGACGCT
CCGGTTGTCATTGTGGATTGCTCTTCAAACTGGGCATTGTTCGGCGCGAG
GTTGTGTTGCGGCCACCGAGTTTAGGGGCACACGCATTCGTTACTGTGCT
GTCCTGGGGTATGCGTGTATGAGTCCAGTCTGCGTTGGGGTCAGCGTTGG
C
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Coding sequence (CDS) from alignment at C-linearis_contig107:301070..304920-

>mRNA_C-linearis_contig107.1037.1 ID=mRNA_C-linearis_contig107.1037.1|Name=mRNA_C-linearis_contig107.1037.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1536bp|location=Sequence derived from alignment at C-linearis_contig107:301070..304920- (Chordaria linearis ClinC8C monoicous)
ATGCCGAGTCATGGGAAGAAGCGTGGAGGAAGGCGTTGTTTTCTGCTGCT
CTGTGTGTCAGTGAGTCTTAGCGGGACGGTGGGATTCTTTCAACACCACC
ATCATGCAAATTTCCAGAGGGTCAAAGCATCATTCAAAAGACCAGCATGC
ACAGCCTTGAAGATGCCGAGTCATGGGAAGAAGCGTGGAGGAAGGCGTTG
TTTTCTGCTGCTCTGTGTGTCAGTGAGTCTTAGCGGGACGGTGGGATTCT
TTCAACACCACCATCATGCAAATTTCCAGAGGGTCAAAGCATCATTCAAA
AGACCAGCATGCACAGCCTTGAAGGCCGCCTTGGAAGGCAGCGGCAGCAG
CAGCGATAGCGTGGACGATCCCGACCAAGAAGGGTCAGATTTGATGTCGG
AGCTCATGATGGAGGCCGCCTTGGAAGGCAGCGGCAGCAGCAGCGATAGC
GTGGACGATCCCGACCAAGAAGGGTCAGATTTGATGTCGGAGCTCATGAT
GGAGGTGAATCAACGGGAGAGTTTGCTGCGAAGAGAAGGGGTTCGTCAGC
TCAAGCGGCCGTCTGCTCTCCTTCCTCCGCACACGGTGCTCGAACATGTG
TTAAGCTCACTTCAAAATCCCGACTATCCTACAGAGGGCGCCGGATGGGA
GAAGGTGAATCAACGGGAGAGTTTGCTGCGAAGAGAAGGGGTTCGTCAGC
TCAAGCGGCCGTCTGCTCTCCTTCCTCCGCACACGGTGCTCGAACATGTG
TTAAGCTCACTTCAAAATCCCGACTATCCTACAGAGGGCGCCGGATGGGA
GAAGGCTTGGCTGTTCAGTGCACTGGACTACGAGGTTAGCCGTGGGCCTA
TCGATTTTCGCCGCGATTGGACGGACGAAGACGACGTACAACCGAGGCTT
GGCTGTTCAGTGCACTGGACTACGAGGTTAGCCGTGGGCCTATCGATTTT
CGCCGCGATTGGACGGACGAAGACGACGTACAACCGAGGTATCTACCTCG
AGAGTCTTTCGTGGCTGTGATGCAGCAGGCTCTTCCGTTCCTCGCTTCGA
TGGACTCGTTTCACATGGCTGGAGAGCCAGTTTTCGATGACGATGATCAT
CGAGTCACCTTCCAGGTATCTACCTCGAGAGTCTTTCGTGGCTGTGATGC
AGCAGGCTCTTCCGTTCCTCGCTTCGATGGACTCGTTTCACATGGCTGGA
GAGCCAGTTTTCGATGACGATGATCATCGAGTCACCTTCCAGATACGCGT
AGTGGCTGACGAGACGGAGACGGCGGTGAACTGGGCCGAAATTGGCTTCC
GGTTATCCAAAGTCAGAGACGGTAGCCACAAGGACTGTTGGCTTATGGAA
AGAGCCATCATCACGGATTCTGGCCACGACCCGAAATGAATACGCGTAGT
GGCTGACGAGACGGAGACGGCGGTGAACTGGGCCGAAATTGGCTTCCGGT
TATCCAAAGTCAGAGACGGTAGCCACAAGGACTGTTGGCTTATGGAAAGA
GCCATCATCACGGATTCTGGCCACGACCCGAAATGA
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