prot_C-linearis_contig107.1037.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig107.1037.1
Unique Nameprot_C-linearis_contig107.1037.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length256
Homology
BLAST of mRNA_C-linearis_contig107.1037.1 vs. uniprot
Match: A0A813GDE5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GDE5_POLGL)

HSP 1 Score: 54.7 bits (130), Expect = 3.290e-5
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 0
Query:   99 QLKRPSALLPPHTVLEHVLSSLQNPDYPTEGAGWEKAWLFSALDYEV--SRGPIDFRRDWT--DEDDVQPRYLPRESFVAVMQQALPFLASM---DSFHMAGEPVFDDDDHRVTFQIRVVADETETAVNWAEIG----FRLSKVRDGSHKDCWLMERAII 247
            Q  RPSALLPP  V+EHVL SL +          ++A+ FS L+ E    R P   R++W     D ++P      +F  ++ +   FL      ++ H+A  PV+ +DD RV+F I +  DET    +    G      L +   G+HKDCWL+    +
Sbjct:   97 QQARPSALLPPDRVMEHVLKSLASLHI---AEATQQAFTFSWLEEEKLSDRTPASSRQNWKFPGHDLLEPA-----AFSQMLYEDYSFLLDRPYSNTRHLA-LPVWSEDDRRVSFLIAL--DETWQPGDGPHPGPSLMMTLRRPALGTHKDCWLVHNVAL 245          
BLAST of mRNA_C-linearis_contig107.1037.1 vs. uniprot
Match: A0A2K1JEB7_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JEB7_PHYPA)

HSP 1 Score: 54.3 bits (129), Expect = 4.480e-5
Identity = 66/244 (27.05%), Postives = 105/244 (43.03%), Query Frame = 0
Query:   16 LLC-VSVSLSGTVGFFQHHHHANFQRVKASFKRPACTALKAALEGSGSSSDSVDDPDQEGSDLMSELMMEVNQRESLLRREGVRQLKRPSALLPPHTVLEHVLSSLQNPDYPTEGAGWEKAWLFS--ALDYEV----SRGPIDFRRDWTDEDDVQPRYLPRESFVAVMQQAL--PFLASMDSFHMAGEPVFDDDDHRVTFQIRVVADETETAVNWAEI-GFRLSKVRDGSHKDCWLMERAIITD 249
            ++C VS S    VGF    +         S +R + +    AL  SGS+ +       E   +++E M  V+  + +   EG    ++P+AL+PP TV+   + +L   D+P E +G + A+ F+  A   E+    +RG     R W        RYL  E F  V++  +  P L +   + M    VF     +   Q   V   TE       I  F L KV  G++KDCW++    + D
Sbjct:   30 MICEVSSSERRRVGF----NRGTLVASSRSLRRRSNSHSVVALAASGSNGEMS-----ELDTVLAEFMKHVDSTQQMWPLEG----RKPTALMPPTTVVRVQMDALMRNDWPEEDSGIKTAFAFAMPARVEEILSGKARGSTSSARAWN----AAVRYLTLEEFGNVVRDPMYSPLL-NFSEWEMVSPMVFHGPGDKRGLQAVQVTYHTENGDEMKRIYTFCLEKVLAGAYKDCWMVVGLRVGD 255          
BLAST of mRNA_C-linearis_contig107.1037.1 vs. uniprot
Match: A0A7I4B3J1_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4B3J1_PHYPA)

HSP 1 Score: 53.1 bits (126), Expect = 6.650e-5
Identity = 51/182 (28.02%), Postives = 82/182 (45.05%), Query Frame = 0
Query:   77 LMSELMMEVNQRESLLRREGVRQLKRPSALLPPHTVLEHVLSSLQNPDYPTEGAGWEKAWLFS--ALDYEV----SRGPIDFRRDWTDEDDVQPRYLPRESFVAVMQQAL--PFLASMDSFHMAGEPVFDDDDHRVTFQIRVVADETETAVNWAEI-GFRLSKVRDGSHKDCWLMERAIITD 249
            +++E M  V+  + +   EG    ++P+AL+PP TV+   + +L   D+P E +G + A+ F+  A   E+    +RG     R W        RYL  E F  V++  +  P L +   + M    VF     +   Q   V   TE       I  F L KV  G++KDCW++    + D
Sbjct:   25 VLAEFMKHVDSTQQMWPLEG----RKPTALMPPTTVVRVQMDALMRNDWPEEDSGIKTAFAFAMPARVEEILSGKARGSTSSARAWN----AAVRYLTLEEFGNVVRDPMYSPLL-NFSEWEMVSPMVFHGPGDKRGLQAVQVTYHTENGDEMKRIYTFCLEKVLAGAYKDCWMVVGLRVGD 197          
BLAST of mRNA_C-linearis_contig107.1037.1 vs. uniprot
Match: A0A813IIP7_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IIP7_POLGL)

HSP 1 Score: 54.7 bits (130), Expect = 7.840e-5
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 0
Query:   99 QLKRPSALLPPHTVLEHVLSSLQNPDYPTEGAGWEKAWLFSALDYEV--SRGPIDFRRDWT--DEDDVQPRYLPRESFVAVMQQALPFLASM---DSFHMAGEPVFDDDDHRVTFQIRVVADETETAVNWAEIG----FRLSKVRDGSHKDCWLMERAII 247
            Q  RPSALLPP  V+EHVL SL +          ++A+ FS L+ E    R P   R++W     D ++P      +F  ++ +   FL      ++ H+A  PV+ +DD RV+F I +  DET    +    G      L +   G+HKDCWL+    +
Sbjct:   97 QQARPSALLPPDRVMEHVLKSLASLHI---AEATQQAFTFSWLEEEKLSDRTPASSRQNWKFPGHDLLEPA-----AFSQMLYEDYSFLLDRPYSNTRHLA-LPVWSEDDRRVSFLIAL--DETWQPGDGPHPGPSLMMTLRRPALGTHKDCWLVHNVAL 245          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1037.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A813GDE5_POLGL3.290e-532.50Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A2K1JEB7_PHYPA4.480e-527.05Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A7I4B3J1_PHYPA6.650e-528.02Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
A0A813IIP7_POLGL7.840e-532.50Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35716FAMILY NOT NAMEDcoord: 55..242
NoneNo IPR availablePANTHERPTHR35716:SF4coord: 55..242
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..255
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availableTMHMMTMhelixcoord: 13..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:301857..304899 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1037.1mRNA_C-linearis_contig107.1037.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig107 301070..304920 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig107.1037.1 ID=prot_C-linearis_contig107.1037.1|Name=mRNA_C-linearis_contig107.1037.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=256bp
MPSHGKKRGGRRCFLLLCVSVSLSGTVGFFQHHHHANFQRVKASFKRPAC
TALKAALEGSGSSSDSVDDPDQEGSDLMSELMMEVNQRESLLRREGVRQL
KRPSALLPPHTVLEHVLSSLQNPDYPTEGAGWEKAWLFSALDYEVSRGPI
DFRRDWTDEDDVQPRYLPRESFVAVMQQALPFLASMDSFHMAGEPVFDDD
DHRVTFQIRVVADETETAVNWAEIGFRLSKVRDGSHKDCWLMERAIITDS
GHDPK*
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