mRNA_C-linearis_contig107.1029.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig107.1029.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.750e-18 Identity = 78/238 (32.77%), Postives = 121/238 (50.84%), Query Frame = 2
Query: 1730 LVRAEADPVENTGL--GMIPLEVASSLGHFEIVMELVQWYGIARCGGPSGGLTSLCLASKKKCCATMTVLLDAGVVDDGCVLRLAINQSNVRSVKLLLEHRTFGSVNPLARVLMKPHEMRKYLSFNPLVGDPTQTPLFFCFHPEKVTPTSCKIMRLLLDHGADTSQQNLVVDVRGVGITVRNILQYAHFLLFRRGGEYDHTDAEKLRLYGLRGLYRLLMQEEAVHADSWLWPDGAGAG 2437
L+RA A+P+ ++PL+ A+ G+ ++ EL+Q GI CGG S G +L +A + + A M +L AGVVD G L ++ SVK LL++ P A V +R PL+ ++ C E+ + ++ RLL++ GADT+ + + GV + L+ +L + + D T K RL+ L G+ RLL+Q EAVHA+SWLWP +G G
Sbjct: 153 LLRANANPLITRAPLPTLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHA-KHYGPGAYV-----NVRDRNGTTPLLSS-----IYVCGVDEQ--SSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHIL--QDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDG 375
BLAST of mRNA_C-linearis_contig107.1029.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 1.920e-17 Identity = 76/222 (34.23%), Postives = 110/222 (49.55%), Query Frame = 2
Query: 1766 GLGMIPLEVASSLGHFEIVMELVQWYGIARCGGPSGGLTSLCLASKKKCCATMTVLLDAGVVDDGCVLRLAINQSNVRSVKLLL-EHRTFGSVNPLARVLMKPHEMRKYLSFNPLVGDPTQTPLFFCFHPEKVTPTSCKIMRLLLDHGADTSQQNLVVDVRGVGITVRNILQYAHFLLFRRGGEYDHTDAEKLRLYGLRGLYRLLMQEEAVHADSWLWPDGA 2428
G+ +PL+VA +V EL+Q GI RCGG S G+ +LCLA + + +L AGVVD G L A Q SVK LL +H S + A V +++ ++ PL+ + T C H S +I+RLL+D GADT+ + +G + L LL + + D T E + L+ +RLL+Q EA HA SW+WP G+
Sbjct: 185 GVCFLPLDVAXXXXXSAVVRELLQRLGIERCGGESRGVDALCLAVTGRHVGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGKHSASRSAYV----NKLNRF-GLTPLLENIT------CGH------CSARIVRLLVDAGADTTAAYRLTGKKGQAMAATTHLTAMGCLLLEKKAKGD-TGEEP---HNLQATFRLLLQVEAAHAISWVWPTGS 385
BLAST of mRNA_C-linearis_contig107.1029.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 5.280e-17 Identity = 80/221 (36.20%), Postives = 111/221 (50.23%), Query Frame = 2
Query: 1763 TGLGMIPLEVASSLGHFEIVMELVQWYGIARCGGPSGGLTSLCLASKKKCCATMTVLLDAGVVDDGCVLRLAINQSNVRSVKLLLEHRTFGSVNPLARVLMKPHEMRKYLSFNPLVGDPT-QTPLFFCFHPEKVTPTSCKIMRLLLDHGADTSQQNLVVDVRGVGITVRNI-LQYA-HFLLFRRGGEYDHTDAEKLRLYGLRGLYRLLMQEEAVHADSWLW 2416
+G +PL+VA GH E+V EL G+ CGG SGG+ SL LA+ ++ M +L GVVD G L +A S SVK LL+H+ G + L DP +TPL E +S +I R L+D ADT + ++V G T R+ L +A H L + G + T+ E+LR L+ ++RLL Q +AVHA SWLW
Sbjct: 167 SGATFVPLDVAVQHGHSEVVRELTHQLGVRGCGGVSGGVESLRLATTEQDVDIMGILTVGGVVDTGRALVVAAENSREESVKFLLQHQAGGGAWYVNNTL-----------------DPFGRTPLVCTI--EACGSSSPRIARFLIDAEADT-KSTVLVTKSGQWTTSRDTPLGFATHSLRQNKVGRKNATE-EQLR--SLKAIHRLLSQVDAVHAVSWLW 364
BLAST of mRNA_C-linearis_contig107.1029.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 7.710e-15 Identity = 80/242 (33.06%), Postives = 112/242 (46.28%), Query Frame = 2
Query: 1733 VRAEADPVENTGLGMIPLEVASSLGHFEIVMELVQWYGIARCGGPSGGLTSLCLASKKKCCATMTVLLDAGVVD-DGCVLRLAINQSNVRSVKLLLEHRTFGSVNPLARVLMKPHEMRKYLSFNPLVGDPTQTPLFFCFHPEKVTPTSCKIMRLLLDHGADTSQ--------QNLVVDVRGVGITVRNILQYAHFLLFRRGGEYDHTDAEKLRLYGLRGLYRLLMQEEAVHADSWLWPDGAG 2431
+RA A+P+ + G +PL A GH ++V ELV WYG RC GG+ +L A+ +K +T L DAGVVD +G L AI + V LLL R G++N R + +++ V +TPL F+ + RLLL+ GAD + D +G + Y FRR + + + GL+G+ RLL QEEAVHA SW WP G
Sbjct: 148 LRANANPLLSA-YGSLPLGTAVYNGHLKVVSELVHWYGTDRCTN-DGGVLALATAASRKHVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLR-RQGGNINVSTRAYVNMAHGTLPETYDDFVFQ--ETPLVSTFNLGSFHAP--RFARLLLEAGADATSGVRFPCDSDEGEEDEDFIGTPLELATSY-----FRR---FSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTG 374
BLAST of mRNA_C-linearis_contig107.1029.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 6.520e-12 Identity = 74/235 (31.49%), Postives = 103/235 (43.83%), Query Frame = 2
Query: 1739 AEADPVENTGLGMIPLEVASSLGHFEIVMELVQWYGIARCGGPSGGLTSLCLASKKKCCATMTVLLDAGVVD-DGCVLRLAINQSNVRSVKLLLEHRTFGSVNPLARVLMKPHEMRKYLSFNPLVGDPTQTPLFFCFHPEKVTPTSCKIMRLLLDHGADTSQQNLVVDVRGVGITVRNILQYAHFLLFRRGGEYDHTDAEKLRLYGLRGLYRLLMQEEAVHADSWLWPDGAGAGA 2440
A A+P+ + G +PL +A GH E+V ELV WYG RC GG +L A+ +K + L +AGVVD +G L AI + V LLL R G+ N R + ++ V +TPL F+ + RLLL+ GAD + G + L + + + GL+G+ RLL QEEAVH+ SW WP G A
Sbjct: 571 ANANPLLSA-YGSLPLGMAVYHGHLEVVRELVHWYGTDRCTS-DGGALALATAASRKHVDIVAFLCNAGVVDTEGVALCAAIEGCSEACVYLLLR-RQGGNANTGTRAYVNMDHGTLPETYEEFVFQ--ETPLVSTFNLGSFHAP--RFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYVRRFSTMKVHREMVRGLKGVIRLLQQEEAVHSVSWTWPIDTGRSA 798
BLAST of mRNA_C-linearis_contig107.1029.1 vs. uniprot
Match: A0A6H5KVC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC2_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 7.600e-9 Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 2
Query: 1778 IPLEVASSLGHFEIVMELVQWYGIARCGGPSGGLTSLCLASKKKCCATMTVLLDAGVVDDGCVLRLAINQSNVRSVKLLLE 2020
+PL+ A+ GHF +V+EL+Q +GI CGG SGG+T+L LA+ K M L AGVVD G L A + ++ VK LL+
Sbjct: 204 LPLDTAAQNGHFGVVLELLQRFGIRGCGGASGGVTALQLAAMKSHIDVMIALTTAGVVDTGIALVKATSFDHMDVVKFLLQ 284
BLAST of mRNA_C-linearis_contig107.1029.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 3.850e-5 Identity = 64/218 (29.36%), Postives = 90/218 (41.28%), Query Frame = 2
Query: 1826 ELVQWYGIARCGGPSGGLTSLCLASKKKCCATMTVLLDAGVVD-DGCVLRLAINQSNVRSVKLLLEHRTFGSVNPLARVLMKPHEMRKYLSFNPLVGDPTQTPLFFCFHPEKVTPT-------SCKIMRLLLDHGADTSQ--------QNLVVDVRGVGITVRNILQYAHFLLFRRGGEYDHTDAEKLRLYGLRGLYRLLMQEEAVHADSWLWPDGAG 2431
ELV WYG C GG +L A+ + +T L DAGVVD +G L AI + V LLL + + + R Y++ + G +T F F + T + + RLLL+ GAD + D +G + Y FRR + + + GL+G+ RLL QEEAVH+ SW WP G
Sbjct: 568 ELVYWYGTDGCTS-DGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGRKAST----------DSRAYVNMDH--GSLPETYDEFVFQEPPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSY-----FRR---FSPMRVHREMVRGLKGVIRLLRQEEAVHSVSWTWPIDTG 764 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig107.1029.1 >prot_C-linearis_contig107.1029.1 ID=prot_C-linearis_contig107.1029.1|Name=mRNA_C-linearis_contig107.1029.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=222bp MIPLEVASSLGHFEIVMELVQWYGIARCGGPSGGLTSLCLASKKKCCATMback to top mRNA from alignment at C-linearis_contig107:170503..172942+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig107.1029.1 ID=mRNA_C-linearis_contig107.1029.1|Name=mRNA_C-linearis_contig107.1029.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2440bp|location=Sequence derived from alignment at C-linearis_contig107:170503..172942+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig107:170503..172942+ >mRNA_C-linearis_contig107.1029.1 ID=mRNA_C-linearis_contig107.1029.1|Name=mRNA_C-linearis_contig107.1029.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at C-linearis_contig107:170503..172942+ (Chordaria linearis ClinC8C monoicous)back to top |