mRNA_C-linearis_contig107.1021.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1021.1
Unique NamemRNA_C-linearis_contig107.1021.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig107.1021.1 vs. uniprot
Match: D7FMZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ7_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 8.330e-147
Identity = 209/260 (80.38%), Postives = 232/260 (89.23%), Query Frame = 1 
Query:    1 QVEDFEMDIAVDTEKLEIFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLGSVSSWLPDNSRFIFSGALVPKQIKRLLKMRGLSAVVARDAESVQTMDEALDVERKRLAAKGLSRISQSRERYLLEKGGGDKGENSQGPVANLVSGLRAFVRLEDGHSVDEVAEMVQTIGETCRNISVVGLWAGDIDPDKSLRMLEAVRAKTGISNLRVAMEHFGPTSAQWFKNTSAPRRGPIMWTFNYEL 780
            +VEDFE+D+ VDTEKLE+FGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQL S+SS LPDNSRFIFSGAL+PKQIKR+LKM+GLSAVVARDAESV  M+E++D ERKRLAAKGLSRISQSRERYLLEKGGG+ G N +GPV +LVSGLR FVR+++G SVD+VAE+V TI +TCRNISVVGLW GD+DP+  L MLEAVR K+GISNLRVAMEH GP SA WF      RRGPIMWTFNYEL
Sbjct:    5 EVEDFEIDMEVDTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLLSISSSLPDNSRFIFSGALIPKQIKRILKMKGLSAVVARDAESVVAMEESIDAERKRLAAKGLSRISQSRERYLLEKGGGENGANQRGPVGSLVSGLRTFVRIQEGQSVDDVAEIVNTIEQTCRNISVVGLWGGDMDPETCLNMLEAVRTKSGISNLRVAMEHLGPKSAGWFTGLRGARRGPIMWTFNYEL 264
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BLAST of mRNA_C-linearis_contig107.1021.1 vs. uniprot
Match: A0A836CMK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK3_9STRA)

HSP 1 Score: 185 bits (470), Expect = 4.560e-54
Identity = 101/261 (38.70%), Postives = 160/261 (61.30%), Query Frame = 1 
Query:    1 QVEDFEMDIAVDTEKLEIFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLGSVSSWLPDNSRFIFSGALVPKQIKRLLKMRGLSAVVARDAESVQTMDEALDVERKRLAAKGLSRISQSRERYLLEKGGGDKGENSQGPVANLVSGLRAFVRL--EDGHSVDEVAEMVQTIGETCRNISVVGLWAGDIDPDKSLRMLEAVRAKTGISNLRVAMEHFGPTSAQWFKNTSAPRRGPIMWTFNYE 777
            +VE F++D  +D  +L+   T IT+VK +G VPASS++VYDC+HG+WLL Q+AYDRKI+LF+SRS   +  +++ +PD+++ +F+GA +PK  KRLLK+R L +VV  DA + + + +A+  ER RLAAKGLS++S++RERYL   GG         P   ++  +R F++L  E   +   VA  +  + E C  + V+GLW    +   +  +L+ V+A      L+V + + G   +  +       RG I+WTF +E
Sbjct:   41 EVESFDVDFDID--RLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGGAQLAP----PDTAVLERIRVFLKLPEEGSTTAAAVAATLAEVREGCPGVEVMGLWG---EGRGAYALLQEVKAAVNAPKLKVTLPYRGVEESFKWNQGLGEGRGSIIWTFEFE 292
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BLAST of mRNA_C-linearis_contig107.1021.1 vs. uniprot
Match: A0A6V1VHY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VHY5_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 5.140e-12
Identity = 56/213 (26.29%), Postives = 106/213 (49.77%), Query Frame = 1 
Query:   13 FEMDIAVDTEKLEIFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLGSVSSWLPD--NSRFIFSGALVPKQIKRLLKMRGLSAVVARDAESVQTMDEALDVERKRLAAKGLSRISQSRERYLLEKGGGDKGENSQGPVANLVSGLRAFVRLEDGHSVDEVAEMVQTIGETCRNISVVGLWAGDIDPDKSLRMLE 645
            FEMDI  D + + +F   IT +K   +   ++ +  +C+  EW+ AQ+A DR I  F SRS   L   +   PD  ++  + +G ++ KQ+KRL K   ++ +   + E    + + L  E  R   K  S++S SR++YL  K G  + +      AN +  LR     +D  +  ++ + ++ I + C N++  G+    ++  ++ R ++
Sbjct:   82 FEMDI--DGDAINLFNERITTLK---KALPTARICLECTGLEWIFAQIAQDRGIDAFYSRSATALRKYAETAPDVADATLLLTGKVLEKQVKRLAKFPEVNCIAVSNKEEADILSQGLAAEIARAMKKRRSKVSASRDKYLDAKTGDSRAKGYL-ESANYI--LRISSEQQD-KAGQQLLDDIEAIEKDCENLNFHGVILDSVESIETYRAIK 285
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMZ7_ECTSI8.330e-14780.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMK3_9STRA4.560e-5438.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1VHY5_HETAK5.140e-1226.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:95792..98060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002900.1
Exons6
Model size783
Cds size765
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927404.8082056-UTR-C-linearis_contig107:95791..958091622927404.8082056-UTR-C-linearis_contig107:95791..95809Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 95792..95809 +
1690879681.7442162-UTR-C-linearis_contig107:95791..958091690879681.7442162-UTR-C-linearis_contig107:95791..95809Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 95792..95809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927404.8180282-CDS-C-linearis_contig107:95809..959821622927404.8180282-CDS-C-linearis_contig107:95809..95982Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 95810..95982 +
1690879681.7530162-CDS-C-linearis_contig107:95809..959821690879681.7530162-CDS-C-linearis_contig107:95809..95982Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 95810..95982 +
1622927404.8282404-CDS-C-linearis_contig107:96349..964001622927404.8282404-CDS-C-linearis_contig107:96349..96400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 96350..96400 +
1690879681.7608387-CDS-C-linearis_contig107:96349..964001690879681.7608387-CDS-C-linearis_contig107:96349..96400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 96350..96400 +
1622927404.8409944-CDS-C-linearis_contig107:96588..967121622927404.8409944-CDS-C-linearis_contig107:96588..96712Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 96589..96712 +
1690879681.768779-CDS-C-linearis_contig107:96588..967121690879681.768779-CDS-C-linearis_contig107:96588..96712Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 96589..96712 +
1622927404.854135-CDS-C-linearis_contig107:97023..972291622927404.854135-CDS-C-linearis_contig107:97023..97229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 97024..97229 +
1690879681.7794542-CDS-C-linearis_contig107:97023..972291690879681.7794542-CDS-C-linearis_contig107:97023..97229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 97024..97229 +
1622927404.8645263-CDS-C-linearis_contig107:97563..976721622927404.8645263-CDS-C-linearis_contig107:97563..97672Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 97564..97672 +
1690879681.788754-CDS-C-linearis_contig107:97563..976721690879681.788754-CDS-C-linearis_contig107:97563..97672Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 97564..97672 +
1622927404.8728955-CDS-C-linearis_contig107:97958..980601622927404.8728955-CDS-C-linearis_contig107:97958..98060Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 97959..98060 +
1690879681.8034403-CDS-C-linearis_contig107:97958..980601690879681.8034403-CDS-C-linearis_contig107:97958..98060Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 97959..98060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1021.1prot_C-linearis_contig107.1021.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 95810..98060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1021.1

>prot_C-linearis_contig107.1021.1 ID=prot_C-linearis_contig107.1021.1|Name=mRNA_C-linearis_contig107.1021.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp
MDIAVDTEKLEIFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDR
KIRLFSSRSVRQLGSVSSWLPDNSRFIFSGALVPKQIKRLLKMRGLSAVV
ARDAESVQTMDEALDVERKRLAAKGLSRISQSRERYLLEKGGGDKGENSQ
GPVANLVSGLRAFVRLEDGHSVDEVAEMVQTIGETCRNISVVGLWAGDID
PDKSLRMLEAVRAKTGISNLRVAMEHFGPTSAQWFKNTSAPRRGPIMWTF
NYEL*
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mRNA from alignment at C-linearis_contig107:95792..98060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1021.1 ID=mRNA_C-linearis_contig107.1021.1|Name=mRNA_C-linearis_contig107.1021.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2269bp|location=Sequence derived from alignment at C-linearis_contig107:95792..98060+ (Chordaria linearis ClinC8C monoicous)
CAGGTGGAAGATTTCGAGATGGACATTGCAGTAGATACCGAGAAGCTGGA
GATATTCGGGACTATCATTACCGAGGTAAAGATGGAGGGACGAGTACCGG
CTTCGTCCCACTTGGTGTATGACTGCTCACACGGAGAATGGCTGCTGGCG
CAAATGGCGTACGACCGGAAGATTCGTCTCTTCTCGAGCAGGTACATATG
ACGATACGGCGCACGAATTTATGGAGTCAGGGTGTAGTGTTGCTCATTGC
TCGTTGGGGAATGATCTTCGGCTTTAGTTTCGTGACGATACTGGAGTTCT
GAAATAGGAATCATAACAGCAGTGTGTACTGTCGCCTTCTTTCGTTTAGG
GCACCTCTTGACTCTTTGACCACTGGCCATATGACACTATACTTGCATGC
GGGGAGCTTCGAGTGTACTTCCGAAGTATCCATGTACGCAGTACGGTGGC
GAGTCCCTTCGTTGCAAAAGGTCCGTGCCCGTGAAAATTAATAGCACAAT
TTGCGCTGATGTCCGATATTGAACTCAATTGCTCTACTGAACCCATCATC
GTGCCCAGGTCGGTTCGACAGCTTGGGAGTGTATCGTCGTGGTTGCCGGA
CAACTCACGGTGAGCCGTCGAGAGACGCAGAAGAGCTGCGCGTGGATTCC
ACGGCACTTGTCTTGGGGAAATGTGTCTCTCCCCTCGCTTCATGAAGCTG
AGAGCAGACAGGTATGCTTCTCGGCTCGGGATGATGGTAGGTGCTTGTGC
CCTAACTCATCGAAAGTGCCTTCGTTTATGCTTCCTTTTGTGGGCAGGTT
CATCTTTTCGGGAGCGCTTGTTCCGAAGCAGATCAAACGCCTTTTGAAAA
TGAGAGGGCTGAGCGCGGTTGTGGCTAGAGACGCGGAGAGTGTGCAAACG
ATGGATGAGGCGTTGGATGTGGTACGTGTGCGAGTGGTTGTGTGAGCTGG
TAGTTGTGCCCCGCCTAACTATTCGTTTCACAGTTTAACGGCCATTTTTT
TGTCCCAATACGACATGGACGCACCTCTTAACCATATCGTGTTTTCAAAT
CTACGGTGCCGGGACGCGGTCTATGAACAGCTTTTAGTGAGATTGTATCT
CTGGCTTTTCATGTAAGCCGTGTGCGCCGAAGTTATTCCGCAGCAGTGGG
CGCTGTGGGATACAACTTGCGATAGCCGCTGAAATGCCGAATCTCGTTGT
CGTGTCACTGCTCTGGTTCTCATTCCCGATAGGAGCGCAAACGATTGGCG
GCGAAAGGTCTCTCCAGAATAAGTCAATCTCGGGAACGATACTTGCTTGA
GAAGGGCGGCGGGGACAAGGGAGAAAATTCGCAGGGACCTGTGGCAAATC
TGGTTTCCGGGTTGCGCGCGTTTGTTCGATTAGAGGACGGGCATTCGGTC
GACGAGGTCGCTGAAATGGTCCAAACCATCGGAGAAACGTGAGTGTTAAA
CCAACTGCCAGCCGTGCAGGCTTGGTGTTGCTCTCCTGCACGTGGTTGGG
GTGCAGGTGAACCATTACGCGAGAAAATCACCCTGCGCATTGTCACTCCA
AGCACCATCAGCGACTCGCTGCGTTGCAAAGGAGATTACATCTGCAGCAA
CCATTTGCTTGAACTGTGAAAACGGTAGGGGTGGGCGCTGGCTGTCATTG
CCCCTTGGCTGGCCGCGTTCAAACTCAGCCTACGGCCATTCACCCTGTTG
CTAGGTTGGCATTCCCGCGTAGGTGCCCTTTTGCCTGTGATGGTGACCCG
GCGTCGTTTCGTATATCCACAGGTGCAGGAATATTTCTGTGGTTGGGCTG
TGGGCAGGTGACATTGACCCGGACAAGAGTCTGAGAATGCTCGAGGCCGT
TCGGGCGAAGACCGGCATATCCAATTTGAGGGTGAGATGCCGCTGTACGT
GATTGATCATGCCAATGCATCTATACCCTTTCACGCCACACGTGGGTGCA
CCTTTATAGCAGTCCGGTGCACTAGCCTGTGGCGATAATTGGCAAATGTC
ATACCGCCAGTTCGTGGGCAACCACCTTCTGGACTGTTGGAAGGCTCCTC
ACACACAACAGCCGATCTACGATCAAGCTTTACACACCATAACTACTGCC
AAGCTATTGAAGTAATATTTTCGTTTCCTGTCGGACGTGTTGGTGGCTTG
CGGTATTGTCGAAACAGGTTGCCATGGAGCACTTCGGCCCCACGAGTGCC
CAATGGTTTAAGAACACTTCGGCTCCAAGAAGGGGGCCGATCATGTGGAC
GTTTAACTACGAACTTTAA
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Coding sequence (CDS) from alignment at C-linearis_contig107:95792..98060+

>mRNA_C-linearis_contig107.1021.1 ID=mRNA_C-linearis_contig107.1021.1|Name=mRNA_C-linearis_contig107.1021.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig107:95792..98060+ (Chordaria linearis ClinC8C monoicous)
ATGGACATTGCAGTAGATACCGAGAAGCTGGAGATATTCGGGACTATCAT
TACCGAGGTAAAGATGGAGGGACGAGTACCGGCTTCGTCCCACTTGGTGT
ATGACTGCTCACACGGAGAATGGCTGCTGGCGCAAATGGCGTACGACCGG
AAGATTCGTCTCTTCTCGAGCAGATGGACATTGCAGTAGATACCGAGAAG
CTGGAGATATTCGGGACTATCATTACCGAGGTAAAGATGGAGGGACGAGT
ACCGGCTTCGTCCCACTTGGTGTATGACTGCTCACACGGAGAATGGCTGC
TGGCGCAAATGGCGTACGACCGGAAGATTCGTCTCTTCTCGAGCAGGTCG
GTTCGACAGCTTGGGAGTGTATCGTCGTGGTTGCCGGACAACTCACGGTC
GGTTCGACAGCTTGGGAGTGTATCGTCGTGGTTGCCGGACAACTCACGGT
TCATCTTTTCGGGAGCGCTTGTTCCGAAGCAGATCAAACGCCTTTTGAAA
ATGAGAGGGCTGAGCGCGGTTGTGGCTAGAGACGCGGAGAGTGTGCAAAC
GATGGATGAGGCGTTGGATGTGGTTCATCTTTTCGGGAGCGCTTGTTCCG
AAGCAGATCAAACGCCTTTTGAAAATGAGAGGGCTGAGCGCGGTTGTGGC
TAGAGACGCGGAGAGTGTGCAAACGATGGATGAGGCGTTGGATGTGGAGC
GCAAACGATTGGCGGCGAAAGGTCTCTCCAGAATAAGTCAATCTCGGGAA
CGATACTTGCTTGAGAAGGGCGGCGGGGACAAGGGAGAAAATTCGCAGGG
ACCTGTGGCAAATCTGGTTTCCGGGTTGCGCGCGTTTGTTCGATTAGAGG
ACGGGCATTCGGTCGACGAGGTCGCTGAAATGGTCCAAACCATCGGAGAA
ACGAGCGCAAACGATTGGCGGCGAAAGGTCTCTCCAGAATAAGTCAATCT
CGGGAACGATACTTGCTTGAGAAGGGCGGCGGGGACAAGGGAGAAAATTC
GCAGGGACCTGTGGCAAATCTGGTTTCCGGGTTGCGCGCGTTTGTTCGAT
TAGAGGACGGGCATTCGGTCGACGAGGTCGCTGAAATGGTCCAAACCATC
GGAGAAACGTGCAGGAATATTTCTGTGGTTGGGCTGTGGGCAGGTGACAT
TGACCCGGACAAGAGTCTGAGAATGCTCGAGGCCGTTCGGGCGAAGACCG
GCATATCCAATTTGAGGGTGCAGGAATATTTCTGTGGTTGGGCTGTGGGC
AGGTGACATTGACCCGGACAAGAGTCTGAGAATGCTCGAGGCCGTTCGGG
CGAAGACCGGCATATCCAATTTGAGGGTTGCCATGGAGCACTTCGGCCCC
ACGAGTGCCCAATGGTTTAAGAACACTTCGGCTCCAAGAAGGGGGCCGAT
CATGTGGACGTTTAACTACGAACTTTAAGTTGCCATGGAGCACTTCGGCC
CCACGAGTGCCCAATGGTTTAAGAACACTTCGGCTCCAAGAAGGGGGCCG
ATCATGTGGACGTTTAACTACGAACTTTAA
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