mRNA_C-linearis_contig106.980.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.980.1
Unique NamemRNA_C-linearis_contig106.980.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig106.980.1 vs. uniprot
Match: D8LCI9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI9_ECTSI)

HSP 1 Score: 822 bits (2124), Expect = 4.380e-290
Identity = 461/627 (73.52%), Postives = 520/627 (82.93%), Query Frame = 1 
Query:   19 MRLQQKTALQKVGVLVRAGMMEPPKWYAAAKQVPPFQRRPSNGIQALKLPWDTLADDFVNRNPHMVEDPEWLGPRGFQPGAPPISHVFAKRQYALMQNGVKKEEAYNLTHEALGKERAADVAAVQRMVKKASSMSGARPSFVSDNDVYSGLRFWQSMMQETPYEDWDLPAKQGLDVFLRRELIGWSDDQVKLAQSARDGTVTALEAETNRLRVTLFPETKTAEYAFPSDVVHPRNFDDAADGDSDASDISAEF-GDADEGEDISSDDAGATEEGRVVREGSEEWKAARLNCGWEATLRRFEEMTEEAGYELDWSAEDRRKLDNFIVGRCIRRSVLDEAFTWLPDPIADALAKVNASITAPGAAPPXXXXXXXXXXXXKAEEQDNGADDDGSERWVPGPELEAFKGNWMTLARKRTGRTAGGVSAAXXXXXXXXXXXGHGGMARDLTPAANRPTLALQSNLNAVLTQAKRQLLPDLVLEVDEKAGPVSVEERKAKDAAKRKIVMSALEWEQEEMDEQRTAVTRKLRAGMTIEQMDPIAAVRKQRLKKGTWKAERRRLLALEKKMYSDQQAGLDHDDTPEHDAPELIDDVLESEVVRRRADEFYAKEKDRIKREAKLQAAAAATAKAAK 1896
            MRLQQKTALQKV VLV+AGMMEPPKWYAAAKQVPPFQRRPSNGI+ALKLPWDTLA++F +RNPHMVEDPEWLGPRGF+PGAPPISHVFAKRQYALMQNG+ KE+AY  TH  +  ER+ADVAAVQ+MV++ASSM+G RPSFVSD+DVYSGL+FWQSMMQET Y +WDL AK GLD FLRRELIGW DD++KLAQSARDGT  ALEAE NRLRVTLFPETKTAEYA+PSDVV PR+         DA++   E  GD ++ E +  ++A       + R+G+EEW +ARLNC W AT RRFEEMTEE GYELDWS EDRR LDNFIVGRCIRRS+LDEAFTWLPDP+A+ALAKVNASI A   +PPXXXXXXXX       E     DD   ERWV GPELEAF G+WM+LARKRTGRT  GV AAXXXXXXXXXXX   G+ARD+     RP++ALQSNL AVLTQAKRQLLPDLVLEVDEKAGPVS EER+ KDAA++KIVMSALEWE+EE+DEQR AVT KLRAGMT+EQ DPI AVRK+RL KGTWKAERRRLL LEKK+Y ++QAGL+HD+ P    PEL+DDV+ESE +RR+ADEFYAKEK RIK+E KLQA AAA A AAK
Sbjct:    1 MRLQQKTALQKVSVLVKAGMMEPPKWYAAAKQVPPFQRRPSNGIEALKLPWDTLANEFASRNPHMVEDPEWLGPRGFRPGAPPISHVFAKRQYALMQNGLMKEDAYERTHALMKMERSADVAAVQKMVREASSMAGGRPSFVSDDDVYSGLKFWQSMMQETSYSEWDLAAKLGLDAFLRRELIGWDDDRLKLAQSARDGTSAALEAEINRLRVTLFPETKTAEYAYPSDVVRPRD---------DANEDEEELDGDVEDEEGVEGEEA-------LARDGTEEWISARLNCSWSATQRRFEEMTEEVGYELDWSVEDRRSLDNFIVGRCIRRSILDEAFTWLPDPVAEALAKVNASILA---SPPXXXXXXXXEAATAEGEGTGDEDDKDGERWVSGPELEAFTGDWMSLARKRTGRTTTGV-AAXXXXXXXXXXXXRRGVARDVEAVVGRPSMALQSNLRAVLTQAKRQLLPDLVLEVDEKAGPVSAEERRVKDAARQKIVMSALEWEKEEIDEQRKAVTDKLRAGMTVEQADPIEAVRKKRLAKGTWKAERRRLLNLEKKLYYEKQAGLEHDEGPATAIPELVDDVVESESIRRKADEFYAKEKARIKKEIKLQAEAAAIAAAAK 607
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCI9_ECTSI4.380e-29073.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:233508..242350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_002740.1
Exons14
Model size2652
Cds size1893
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.980.1prot_C-linearis_contig106.980.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 233526..241609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927399.6656559-UTR-C-linearis_contig106:233507..2335251622927399.6656559-UTR-C-linearis_contig106:233507..233525Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 233508..233525 +
1690879678.1362848-UTR-C-linearis_contig106:233507..2335251690879678.1362848-UTR-C-linearis_contig106:233507..233525Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 233508..233525 +
1622927399.8426461-UTR-C-linearis_contig106:241609..2423501622927399.8426461-UTR-C-linearis_contig106:241609..242350Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 241610..242350 +
1690879678.3038447-UTR-C-linearis_contig106:241609..2423501690879678.3038447-UTR-C-linearis_contig106:241609..242350Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 241610..242350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927399.6774724-CDS-C-linearis_contig106:233525..2336211622927399.6774724-CDS-C-linearis_contig106:233525..233621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 233526..233621 +
1690879678.1479168-CDS-C-linearis_contig106:233525..2336211690879678.1479168-CDS-C-linearis_contig106:233525..233621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 233526..233621 +
1622927399.6868465-CDS-C-linearis_contig106:234003..2342021622927399.6868465-CDS-C-linearis_contig106:234003..234202Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 234004..234202 +
1690879678.1669347-CDS-C-linearis_contig106:234003..2342021690879678.1669347-CDS-C-linearis_contig106:234003..234202Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 234004..234202 +
1622927399.6985388-CDS-C-linearis_contig106:234579..2347691622927399.6985388-CDS-C-linearis_contig106:234579..234769Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 234580..234769 +
1690879678.1765711-CDS-C-linearis_contig106:234579..2347691690879678.1765711-CDS-C-linearis_contig106:234579..234769Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 234580..234769 +
1622927399.7129664-CDS-C-linearis_contig106:235516..2356341622927399.7129664-CDS-C-linearis_contig106:235516..235634Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 235517..235634 +
1690879678.1843288-CDS-C-linearis_contig106:235516..2356341690879678.1843288-CDS-C-linearis_contig106:235516..235634Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 235517..235634 +
1622927399.7263305-CDS-C-linearis_contig106:235861..2360331622927399.7263305-CDS-C-linearis_contig106:235861..236033Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 235862..236033 +
1690879678.1935885-CDS-C-linearis_contig106:235861..2360331690879678.1935885-CDS-C-linearis_contig106:235861..236033Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 235862..236033 +
1622927399.7393618-CDS-C-linearis_contig106:236456..2365871622927399.7393618-CDS-C-linearis_contig106:236456..236587Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 236457..236587 +
1690879678.206353-CDS-C-linearis_contig106:236456..2365871690879678.206353-CDS-C-linearis_contig106:236456..236587Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 236457..236587 +
1622927399.7592213-CDS-C-linearis_contig106:237086..2372331622927399.7592213-CDS-C-linearis_contig106:237086..237233Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 237087..237233 +
1690879678.2163324-CDS-C-linearis_contig106:237086..2372331690879678.2163324-CDS-C-linearis_contig106:237086..237233Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 237087..237233 +
1622927399.769248-CDS-C-linearis_contig106:237710..2380311622927399.769248-CDS-C-linearis_contig106:237710..238031Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 237711..238031 +
1690879678.2268817-CDS-C-linearis_contig106:237710..2380311690879678.2268817-CDS-C-linearis_contig106:237710..238031Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 237711..238031 +
1622927399.7782397-CDS-C-linearis_contig106:238354..2384231622927399.7782397-CDS-C-linearis_contig106:238354..238423Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 238355..238423 +
1690879678.2390983-CDS-C-linearis_contig106:238354..2384231690879678.2390983-CDS-C-linearis_contig106:238354..238423Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 238355..238423 +
1622927399.7897477-CDS-C-linearis_contig106:239087..2391611622927399.7897477-CDS-C-linearis_contig106:239087..239161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 239088..239161 +
1690879678.2565258-CDS-C-linearis_contig106:239087..2391611690879678.2565258-CDS-C-linearis_contig106:239087..239161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 239088..239161 +
1622927399.802797-CDS-C-linearis_contig106:239643..2396921622927399.802797-CDS-C-linearis_contig106:239643..239692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 239644..239692 +
1690879678.270279-CDS-C-linearis_contig106:239643..2396921690879678.270279-CDS-C-linearis_contig106:239643..239692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 239644..239692 +
1622927399.8116643-CDS-C-linearis_contig106:240106..2402231622927399.8116643-CDS-C-linearis_contig106:240106..240223Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 240107..240223 +
1690879678.2787042-CDS-C-linearis_contig106:240106..2402231690879678.2787042-CDS-C-linearis_contig106:240106..240223Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 240107..240223 +
1622927399.8199062-CDS-C-linearis_contig106:240566..2406721622927399.8199062-CDS-C-linearis_contig106:240566..240672Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 240567..240672 +
1690879678.2868917-CDS-C-linearis_contig106:240566..2406721690879678.2868917-CDS-C-linearis_contig106:240566..240672Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 240567..240672 +
1622927399.8288238-CDS-C-linearis_contig106:241505..2416091622927399.8288238-CDS-C-linearis_contig106:241505..241609Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 241506..241609 +
1690879678.2950807-CDS-C-linearis_contig106:241505..2416091690879678.2950807-CDS-C-linearis_contig106:241505..241609Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 241506..241609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.980.1

>prot_C-linearis_contig106.980.1 ID=prot_C-linearis_contig106.980.1|Name=mRNA_C-linearis_contig106.980.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=631bp
MRLQQKTALQKVGVLVRAGMMEPPKWYAAAKQVPPFQRRPSNGIQALKLP
WDTLADDFVNRNPHMVEDPEWLGPRGFQPGAPPISHVFAKRQYALMQNGV
KKEEAYNLTHEALGKERAADVAAVQRMVKKASSMSGARPSFVSDNDVYSG
LRFWQSMMQETPYEDWDLPAKQGLDVFLRRELIGWSDDQVKLAQSARDGT
VTALEAETNRLRVTLFPETKTAEYAFPSDVVHPRNFDDAADGDSDASDIS
AEFGDADEGEDISSDDAGATEEGRVVREGSEEWKAARLNCGWEATLRRFE
EMTEEAGYELDWSAEDRRKLDNFIVGRCIRRSVLDEAFTWLPDPIADALA
KVNASITAPGAAPPASGGATAAAGDAKAEEQDNGADDDGSERWVPGPELE
AFKGNWMTLARKRTGRTAGGVSAAAAAAKAKAKGGGHGGMARDLTPAANR
PTLALQSNLNAVLTQAKRQLLPDLVLEVDEKAGPVSVEERKAKDAAKRKI
VMSALEWEQEEMDEQRTAVTRKLRAGMTIEQMDPIAAVRKQRLKKGTWKA
ERRRLLALEKKMYSDQQAGLDHDDTPEHDAPELIDDVLESEVVRRRADEF
YAKEKDRIKREAKLQAAAAATAKAAKEAKA*
back to top

mRNA from alignment at C-linearis_contig106:233508..242350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.980.1 ID=mRNA_C-linearis_contig106.980.1|Name=mRNA_C-linearis_contig106.980.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8843bp|location=Sequence derived from alignment at C-linearis_contig106:233508..242350+ (Chordaria linearis ClinC8C monoicous)
AGAGATAGGGCAGGCACGATGCGCCTCCAGCAGAAGACCGCCCTGCAGAA
GGTAGGGGTGCTGGTGCGGGCGGGAATGATGGAGCCGCCCAAGTGGTACG
CCGCGGCGAAGCAGGTGCGAAACATGCGTCCAGGGTCAGGTCGGCGTGAG
TTTTCCGACGTGGCTGACGCCACGCGCAGCCGCAGACAGTGGCTGCGGCC
GCAACGTGTGGACTTCTTGTGGGCCGAAGAGCACACGAGCATCTGTCCCG
GCACCCGCCTCTCCCGCACCCCCATCTCCGCTCCCTGTCTTTTTAGCACC
GCCGGTACAGCGGCAGTAACAACACCGCGTTACCTCTCTATCATCGAGCT
ACCGTACACCTTTGTTGCTCTCGCCGAACGTCACAGAATACCGCGCGCAT
CGCACGACGCTTAAGCGGGCGCATACCACGCCCGCTCGGTTGGAACAGCA
CCCACAACCTCTTTCCTCCGCCTATTCGCCCCCCATTGTCCCGCAGGTAC
CTCCATTCCAACGGCGCCCGTCCAACGGCATCCAGGCGCTCAAGCTGCCG
TGGGACACCCTGGCCGACGACTTCGTCAACCGGAACCCCCACATGGTGGA
AGACCCCGAGTGGCTGGGCCCCCGGGGATTCCAGCCCGGAGCCCCTCCCA
TCAGCCACGTGTTCGCCAAGCGCCAGTACGCCTTGATGCAGAACGGTGCG
CCATGCTTGCGGGAAAAAGGGGGGGGGTGATCCTCGGGTCCGTAGCGGGT
GCTAAGCATGGGGGTAGTGTTTTTGGGCGAGGTTGTCCCTGGGGGGGATG
GGAGATGGAGGGAGTGGTCGATGATCGTGTTGGGTGCATGATGAGTCGGT
GTCTATTCCGTGTGTATTACTGCAGCGGTAGACCAGGGCCAGCTGCAGAG
CAGCGCAGTTTTTTTTGCATGAGTAGCACAGAAACCCACGGGGTGCACAC
ACACGCACACACAAATCGCGTGTGTGTTGTGTGTCGTGTGCCGGCCGCTT
TGGACGGCGATGACTAAACCCCGCCGCAAAAACGAAAACCAAGAAACACA
CTATCCCCCAATCCCACTCCAGGGGTCAAGAAGGAGGAGGCGTACAACCT
TACGCACGAAGCTTTGGGGAAGGAGCGCGCGGCGGACGTGGCGGCGGTGC
AGAGGATGGTGAAGAAGGCCTCCTCCATGTCCGGCGCCCGGCCCAGCTTC
GTGTCCGACAACGACGTGTACAGCGGCCTCAGGTTCTGGCAGAGCATGAT
GCAGGAGACCCCGTGAGTTGGCATCGACGTTGTTGCTGTTGTTATTGTTG
TTGTTGGCGCTGTCGTGGGCGCTGCTGGTGCTACCGCTGTTGTTGTTGTG
GCTGTTGTTGCGACTGGTGATCGCAGGGGCGGCGGCGGTGTGTTTTTTGT
CGTGCCCGTTTGATCGGTCAGCTTTGCATACATGTGGCATAGATGCATAC
GATTTATGTCATGTTTTCCGTCCACAGCTGCCTGATTTTTCGTGGAAATG
AGCTTGGTGCGAGCGGGTGGTCCGATGCCCTTTGCTACTTTGGTCAGAAA
CAAGCAGGCATCCCACAGACGCGATTCAACCAGCCCACCGTATGCCACGA
GAGTGCAACGGTGGTGGCCTCTGGTTCTCGCTTGTGCCTTCGCCCGGATT
TTTCGATGCCAATCGGTCTGGCTTTTTGGTTGTCTCTCGAAAATCGACAG
TTTGTGGTGATGTTTGTTTGCTGGGCACTCGGGGGTTTGGGGGTTATATA
TTTTTCTATCTTTCTTTCTGTCTTTCTTTCTGTCTGTCCCTCTCTCTCTC
TCTCTCTCTCTCTCGCTCTCTTTTAGCATCTAGACTACTTGTATGTTGAT
GGGTGTTATATCGGCACCTCGGCTTCCCTGTTGTTGTTGTTGTTGTTGTT
TATCTCCTCGCGTTCTTCCCGTGAACTCAACATAATTTCTTCACTCTTCC
GTCATTTGTTGCGCGTGTTGTGCTTGTGGCTTTTCTCTCGTCCCGTGTTG
TACGGTCAGGTACGAAGATTGGGACCTGCCGGCGAAGCAAGGGCTCGACG
TGTTCCTCCGCCGCGAGCTGATTGGCTGGAGCGACGACCAAGTCAAGCTC
GCGCAGAGCGCCAGGGATGGCACCGTGGTAAGCCTTGAGGGTGGGGGACA
GAAAGGAGTTTTTTTTTTTCTTGCGCGTGGCGTGCCTGTTCTTGGTGTTT
TTTTGTTCTTGTTTTTTTTCCACACAACGACGGCGATATTTTCTCTTCGT
GGCGATTGCCACGCACACACGACCCACACATGTAGTTCCCAACCCCAGTG
AAACGAATCCAAACAACCCCAATCCCAACACAAACCAACCCAATCCCCCA
CCAGACGGCGTTGGAGGCGGAGACAAACCGGCTGCGGGTGACCCTGTTCC
CCGAGACCAAGACGGCCGAGTACGCCTTCCCCTCAGACGTCGTGCACCCC
CGAAATTTTGATGACGCGGCCGACGGCGACAGCGATGCCAGCGACATCAG
CGCCGAGTTCGGCGATGCTGACGAAGGTGTGTGATCGGCCAACATGAGTG
CCTCATATGTGTCTAGTGACACCCTCTGGCATTCTGTCAACTCCGGAGTA
TGTACATTGTTTTCATCATCGATGTCTTGCATTTCGGGGCGTATATTTAA
ATTACCGGGGGGGTGGACACTCCACCAGGGCTCGCGTCCTCGGGAACGCA
CGACACACAAACGGCCGCCTGTTGTAGACGATCCCCATAAACCGCAAAGG
AGCTCTAGGAGAAGGGCGGCGTTCACACGACAAACGTATGCATAGGCAGA
GAACAGATGAAGGCGTCCTCTGCTCGAGCCCGTCAACCAACTCCACGCCA
AGACAAAGTATGTTTTGCACAGGCATGTTTTGTGCTACAAGTAACGTATA
TGCATGATACCAAACTACTTTATTTGTGACGTGATGAAACGAACAGCAGG
CGAGGACATCTCTAGTGACGACGCTGGTGCCACGGAGGAGGGGAGGGTGG
TGAGGGAGGGCAGCGAGGAGTGGAAGGCCGCGCGGCTCAACTGCGGCTGG
GAGGCCACCCTGCGACGCTTCGAGGAGATGGTGAGTGCGGGGTGGGGAAG
TTTTTGTGCGTGCGTGCGTGCGTGCGTGCTTGCGTTTTGGCGGGTTTCTT
GCTGTTGGGTGTATGGGTTGTTGGGTCAACGTTGTACGTTGCTGTTTTCG
TGCCATTTGATGTATGTATCAGCGCAGTGCAACCCCACCCGCTTTGCAAG
CATGCGTTTTAGTGCACACCCCCAACATATCCAGTTCACACCTGCGGGGC
CTCTTTTCCCCGCTTGCATCATAGACGGTGCAGTTGATGTGGCCAATACA
CATTTACGCATGACCGAATCCAACTCTCTGCCCACCTGTTGAGCTCATGC
TTTTTGTCTGGATCGTTGACGACGATGCGTTTCGATGTCGCAACAAACAA
CCGAATCACCGAATTCGCCTCCCCACCCACCACCCCATCCCGTCTGTCTA
AAAGAGACGGACCGCCCACTCGTTTTATGCTCGTTTGTGCTTCTGATGCC
GTGTGACATGATGTGGTATGATCTTGAAGACGGAAGAGGCCGGGTACGAG
CTGGACTGGTCCGCTGAGGACCGGCGCAAGCTGGACAACTTCATCGTGGG
CCGCTGCATCCGCCGCTCGGTGCTGGACGAGGCCTTCACCTGGCTCCCAG
ACCCCATCGCGGATGCCCTGGCCAAGGTGAGCACCGCACCGACCCCCACA
CACGGACGGACGGACAGACAGACAGACAAGACGCGGTCACGCGGTCGCAT
GCATGCCTGTGTGACGGTGAGGTCCGATCCCGCGCGAGAGTGACGGAGCC
GCTCGCAGCGAGATTCGGGCTGTTGAGGCGTGGTTACCCGTGCTTTTGTG
TAGGCACGCTCCCCTGCCTCTGCGGAAAGTATGTACCTGGTACGGAGGAA
ACGTGACAACGACCCCCCGCCGCGCTGTCCGTTGGCGTTTCGTTCCTGCA
AGGGGCTCGAAAGACAGTCCACGTTTTCCCCTCCTCCTTATGTTTCTGTG
TTTGCCTATCATGCGGTATGTACTTGTTGCACGTATGATAACGTAGCCGC
GACCCTCCTTTTGCTCTGCCCGTCTCGCTCGGCTCATCGCCTGACGATGT
GGTGTATACCGCTTGCCTTGCTTTGCTGTGCTGTGCGTGCGTACCTGACG
CAGGTGAACGCCAGCATAACGGCACCCGGGGCCGCTCCGCCGGCTTCCGG
GGGAGCTACCGCCGCCGCGGGGGATGCCAAGGCCGAAGAACAAGACAACG
GCGCCGACGATGATGGCTCTGAGCGCTGGGTGCCCGGCCCGGAGCTGGAG
GCCTTCAAGGGGAACTGGATGACGCTGGCGCGAAAGAGGACGGGCAGGAC
CGCGGGCGGGGTGTCTGCTGCTGCTGCTGCTGCCAAGGCCAAGGCCAAGG
GAGGCGGCCACGGGGGGATGGCGAGGGATCTTACCCCCGCGGCCAACCGG
CCGACCCTCGCCCTGCAGTCGAACGTGAGAGAGAGAGGGGAGGGGAGGCA
GAGGGAAAGAGGAAAGAGAGAGCGAGAGAGAGGCAGGCAGGCAGGGACGG
AGGGAGGGAGTACGTCGTGCGCTTATCCCAACTACTGCAGAGGCTGCCAT
TGAGGCGATGAGCTGAGACAATAGGCGCACGTGTTGATTCGGTTGCCCCA
AAGTGTGTCGGTGCGCCCAAGGCCCTTCTATCGACTCCTTGCGCGCGTCT
CCTGTCAGTCGATCAGTCACTCTTTTCGCCCGTTTGCCCCCCCTGCCCTG
CGTGTTGTGATGCCCCCCCCCCCCGTCTCGGTGGTCCGCAATTCCAGCTG
AACGCGGTGTTGACGCAGGCCAAGAGGCAGCTGCTGCCCGATCTCGTGCT
GGAGGTCGACGAGAAGGTGAACGATCCAAGGGTTTCCGCCCAGCCCCGTC
CTCTCGCGTGTTAGCTTTTTTCGCCCTGAAGAAACACGATGTTGGGCAAA
ACAAAAGTCCCCGATTGTTTGCACGGCGTTCGCATCTGTTCGTGGGCCAC
GAAGATTTGTAGTGCTTGTTTTGTGGGTGACACATGCGTGCACACGTCCT
TTGAGGCACTGCTGTATGCTAGGGCACCTTTTCCTTTCTAGCTATTCCGT
ATTTGAGATGCGCGTGTTGATTTGGGCAGGGTGTCATGTGTCATTTTATG
TGCTCCGCGTGTGCACTGGTATGTTCGCCACGCAGGCCGTCATTTTATTT
GTTCCGCGTGCGCACTGGTGTATTCGCCACGCAGGCCGTCATTTTGTTCG
GTCCGCGTGCGCACTGGTATGTTCACCACGCCGGGCGTCATTTTGTTTGT
TCCGCGTGCGCACTGGTATGTTCACGCAGGGCGTCTTTTTTTGTTTGTTC
CGCGTGTGCACTGGTATGTTCACCACGCAGGGCGTCTTTTTTTGTTTGTT
CCGCGTGTGCGCTGGTATGTTCACCACGCAGGGCGTCTTTTTTTATTTGT
TCCGCGTGCGCACTAACCGGTGTATTCGCCACACTCGTTTGAACAACAAC
CATTTTTTTTTTCGTCCTTCACTCGCCCAGGCGGGGCCGGTTAGCGTGGA
GGAGAGGAAGGCGAAGGATGCCGCCAAGAGGAAGATCGTCATGTCCGCGC
TAGAGTGAGTGCCGCGGTGCACTTTTTGCCTCGATTCGCGGGTTCAAAGT
CCTTCCTTCGTGTCGCCCGCCGACTTTTTGGTTTTCTCCACCTTTCGCGG
TCGCGGTCAGAAGCTAAGGCCTGCGCTTTTCCGGCGGCGTTGCTCATCAT
CACAAATGCGTGTGTGGTTTGGGGTGGCAGTCACGGGCCGGCGGAGTTGG
GTTTGCGAGGCCCACGTACAGAAAACAGCCGCGCCGCGCGTAGCCGCATG
TTCCGCGAAAATAAAATGGGGCCTGGTACAACATCTATCGGAGCTTTGAC
CAACTTGGAGAGTTACGCAGCTGCACAGAATTGGGCTTGGAGTGAAACGA
TTTGGGCCCTCGGGAAGCGAGAGGCGAAGGTAGCTGCCTGGCTTTGTGTG
TGTGCGGTGTCGCCATCCTTTTCTCCTTCACCTCGCTCATACCCATGTAA
GAGCTCTGCGTTCTTCTTCGTCTTGTGCGGCTCCAGGTGGGAGCAGGAGG
AAATGGACGAGCAGCGAACGGCGGTGACTCGGAAGGTAGGCGTAGAGAAA
CGTTTTTTCCGCTGTCTTTGTCGTGCTTTTCGCTTGTAGCCGACCACCCG
TGCGTCGTGGTCGAGTTTGGTGTGTCTCACAAGCACGTGCTGGGTTCATT
GTTTCATGGATAATTTATAGGCCAGATCTGGCGCGCATCAGCTTCGTTCC
CCGTAGAACTGGATTTGCTGTGTGGCGGAATGAATGGTTGCGCGCACGGG
TACTCTCTCTCTCTCTCTCTCTCTTGAGGCCTAAGTTACGTACTCCGAGA
TGCCTGTGTTGTGCCCCTTCCCTTTTCTGTACGGAGCAAAGTGAAACGCC
GGTGGGAGCCAATGCCAACCTGAAACCGAAAAGAACCGCCGCAAGCATCC
TCTTGTCCGTGCCCCCCTGTTTTGGTTCCCGTCTTGGGGTCGTTTTCAGC
TGAGGGCAGGGATGACCATCGAGCAGATGGACCCCATCGCCGCCGTGCGC
AAGCAGCGTCTGAAAAAGGGGACGTGGAAGGCCGAGCGCCGCCGCCTCTT
GGCGCTCGAGAAGAAGGTGGGTGTGGTTGGCATCTTTGTGCGCTGTGCTA
CTACTACTGCTGTGCTTTCGAGTTGTACTTCGGGAGCGGGTTTTTCCACG
CCTGACTTTGGTCGCCCGCCTCTCTCTCGTTCCTCCACAGGGGTTTTGAA
TCTCTGCGTGTCGTTTTGGTTGTGAGGCACTCTCTCCCGTGCGTGCTGCG
AAAGCGAAGCCCCCACCGCCCAGCTCTCTTGCCCCGGACAACGGGCTCGC
TCCATCGTATCATGTCACCAATGCGTGGTGTTGGCCATTCTAAAACGCGA
GCTGACGGTTGCGTCCGTTTCTGCGCTCGGCGACCCCCCCCCCCCCCCGC
GCCCGGCAGATGTACAGCGACCAGCAGGCGGGCCTCGACCATGATGACAC
GCCAGAGCACGACGCGCCCGAGCTGATCGACGACGTTTTGGAGAGCGAGG
TTGTCAGGAGAAGAGGTGGGCCTACGGTTGAGACGTCTACACTGCATTAT
TTATATGGAAATAAGAACGTACGTACGTACGTACGCACGTACGTACATAG
CGTGCGGTGCCCGGCCGGCATTGTGCTTTGCGATTTTTAGAGATTTTCTT
CAAAACGTTAGCGGTATACGCTCGACCTGTGAATAGCTCGTTCGGGGGGG
ACTCTCGCACACGCACTGGCCGTCCCAGCCTAGGTGCGCACAGTCCGCCA
TCCGTATCGTTCGCTCCGTGTGAAAGTGGTTATTTGTTGTGAGTGTATCT
CCCGTATGGCCCGTGGAAAGTGTAAACCACGGGCATTCTATTGCCCAATA
CTTGTAAGAGGTTGAGGGATATAATTAGAGGGTGGAAAGTGTAACCACGG
GTATTTCATTGCCCAATAAGAGTTGAGGGATACAGAGTTAGAGCGTTGGC
AAGGTGAATGTTCAGTAGATAGAGATGCAGGTTAAGGTTTGCACAACAGT
TCAAGCACGTTTAGCTTCGTGAGACGTTCCAAAGCAACTGCTGTTACTGT
TTTGCCTCTCGGTCGCAGCGTCTAGATGAGGTGTCGCCGCGAAAGAGGCG
AATGCGAAGTGAACATCGCGGGGCGTAGCGTGCAGGATAGGATTTGTGCC
TTAACGGGTGGAATTGTGGCGCACGAACCTTGCCACGATCAGACACGGGA
GATCACCCGTGCACGGTGATGTGCGAAAGAGAGAAAATGCCGTGGGACGT
GCGCGCAAAGCCCTGTTTGCCCGCCCGCGCTCCCCCCGATAATTGAGCCT
CGTTCCACCCTCCCCCTCCCTTGTTTCTTTCGGCTTTGAAACCTCTAGCT
GACGAGTTCTACGCCAAGGAAAAAGACCGCATCAAGAGAGAGGCCAAGCT
GCAGGCCGCCGCGGCCGCCACCGCCAAGGCTGCGAAAGAGGCCAAGGCTT
AAGTCAGAAAGCGTTGGCTGTTACGCGGGCCCCTTCGAAGAGATGGTCGC
GGTTCGCCGTCGTGGCGTGAAAAGGCCCGATAGTCCGGCTCGCCTCACCT
CGTCGGGCGAGAGGGGTTGAACCCTTCCCTGTGTAGCACCGGGCCGAGGG
TGCGCCGATAGAGCAGGCAGAAGCGGACAGCCTTGGTAGGGCAACCTTCG
CTTGTTTTGGGGTCGCTTTGAAGGTAGATGTCGTTGCGCGCCGCTTTGAC
CCCCTCGACCCCCCGCGTAGAGTGTCGGGTGTCGGGTCGGCAGGGCGCCT
TTCCGGCTGGAGACCTCTCGCCGATGTCGCCGAAAAAGGGTTAGGCACGC
CGCCCAGCGTGTCCGATGTGTTTTCTCTCCATGCCGTGGTGACAAGCAGA
CGTATCGCGCTCAGATTGAGGGTCGCCAATTTCTCAAGTTTTTGTTTTAT
TTACTACGGGGGATAATCAGTGGCACGGGTTGTCAATTCACACGGGGCTG
CCCTCGAGGCCGAGCTTTGAATTGGCGCAGGCAAGGCACCTCAATCTGCC
ACGCCGCCAAGGTGCTGTGCAAGAGGTCTCACGGCCGGCGTTTTCGTTCT
CTCCTAAGACACGCTTTGGCGAGTCAACCGGCAGCTCGCGCTCTATGTTA
GGAGCTTGAGAGATGCGGGGAGACAGCTGTACTTTGTTTAGGAAGGGTTT
TTGGTGTTGTCTCCCTGCCCAACCACACTATCAATGCCCTGAA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig106:233508..242350+

>mRNA_C-linearis_contig106.980.1 ID=mRNA_C-linearis_contig106.980.1|Name=mRNA_C-linearis_contig106.980.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3786bp|location=Sequence derived from alignment at C-linearis_contig106:233508..242350+ (Chordaria linearis ClinC8C monoicous)
ATGCGCCTCCAGCAGAAGACCGCCCTGCAGAAGGTAGGGGTGCTGGTGCG
GGCGGGAATGATGGAGCCGCCCAAGTGGTACGCCGCGGCGAAGCAGATGC
GCCTCCAGCAGAAGACCGCCCTGCAGAAGGTAGGGGTGCTGGTGCGGGCG
GGAATGATGGAGCCGCCCAAGTGGTACGCCGCGGCGAAGCAGGTACCTCC
ATTCCAACGGCGCCCGTCCAACGGCATCCAGGCGCTCAAGCTGCCGTGGG
ACACCCTGGCCGACGACTTCGTCAACCGGAACCCCCACATGGTGGAAGAC
CCCGAGTGGCTGGGCCCCCGGGGATTCCAGCCCGGAGCCCCTCCCATCAG
CCACGTGTTCGCCAAGCGCCAGTACGCCTTGATGCAGAACGGTACCTCCA
TTCCAACGGCGCCCGTCCAACGGCATCCAGGCGCTCAAGCTGCCGTGGGA
CACCCTGGCCGACGACTTCGTCAACCGGAACCCCCACATGGTGGAAGACC
CCGAGTGGCTGGGCCCCCGGGGATTCCAGCCCGGAGCCCCTCCCATCAGC
CACGTGTTCGCCAAGCGCCAGTACGCCTTGATGCAGAACGGGGTCAAGAA
GGAGGAGGCGTACAACCTTACGCACGAAGCTTTGGGGAAGGAGCGCGCGG
CGGACGTGGCGGCGGTGCAGAGGATGGTGAAGAAGGCCTCCTCCATGTCC
GGCGCCCGGCCCAGCTTCGTGTCCGACAACGACGTGTACAGCGGCCTCAG
GTTCTGGCAGAGCATGATGCAGGAGACCCCGGGTCAAGAAGGAGGAGGCG
TACAACCTTACGCACGAAGCTTTGGGGAAGGAGCGCGCGGCGGACGTGGC
GGCGGTGCAGAGGATGGTGAAGAAGGCCTCCTCCATGTCCGGCGCCCGGC
CCAGCTTCGTGTCCGACAACGACGTGTACAGCGGCCTCAGGTTCTGGCAG
AGCATGATGCAGGAGACCCCGTACGAAGATTGGGACCTGCCGGCGAAGCA
AGGGCTCGACGTGTTCCTCCGCCGCGAGCTGATTGGCTGGAGCGACGACC
AAGTCAAGCTCGCGCAGAGCGCCAGGGATGGCACCGTGGTACGAAGATTG
GGACCTGCCGGCGAAGCAAGGGCTCGACGTGTTCCTCCGCCGCGAGCTGA
TTGGCTGGAGCGACGACCAAGTCAAGCTCGCGCAGAGCGCCAGGGATGGC
ACCGTGACGGCGTTGGAGGCGGAGACAAACCGGCTGCGGGTGACCCTGTT
CCCCGAGACCAAGACGGCCGAGTACGCCTTCCCCTCAGACGTCGTGCACC
CCCGAAATTTTGATGACGCGGCCGACGGCGACAGCGATGCCAGCGACATC
AGCGCCGAGTTCGGCGATGCTGACGAAGACGGCGTTGGAGGCGGAGACAA
ACCGGCTGCGGGTGACCCTGTTCCCCGAGACCAAGACGGCCGAGTACGCC
TTCCCCTCAGACGTCGTGCACCCCCGAAATTTTGATGACGCGGCCGACGG
CGACAGCGATGCCAGCGACATCAGCGCCGAGTTCGGCGATGCTGACGAAG
GCGAGGACATCTCTAGTGACGACGCTGGTGCCACGGAGGAGGGGAGGGTG
GTGAGGGAGGGCAGCGAGGAGTGGAAGGCCGCGCGGCTCAACTGCGGCTG
GGAGGCCACCCTGCGACGCTTCGAGGAGATGGCGAGGACATCTCTAGTGA
CGACGCTGGTGCCACGGAGGAGGGGAGGGTGGTGAGGGAGGGCAGCGAGG
AGTGGAAGGCCGCGCGGCTCAACTGCGGCTGGGAGGCCACCCTGCGACGC
TTCGAGGAGATGACGGAAGAGGCCGGGTACGAGCTGGACTGGTCCGCTGA
GGACCGGCGCAAGCTGGACAACTTCATCGTGGGCCGCTGCATCCGCCGCT
CGGTGCTGGACGAGGCCTTCACCTGGCTCCCAGACCCCATCGCGGATGCC
CTGGCCAAGACGGAAGAGGCCGGGTACGAGCTGGACTGGTCCGCTGAGGA
CCGGCGCAAGCTGGACAACTTCATCGTGGGCCGCTGCATCCGCCGCTCGG
TGCTGGACGAGGCCTTCACCTGGCTCCCAGACCCCATCGCGGATGCCCTG
GCCAAGGTGAACGCCAGCATAACGGCACCCGGGGCCGCTCCGCCGGCTTC
CGGGGGAGCTACCGCCGCCGCGGGGGATGCCAAGGCCGAAGAACAAGACA
ACGGCGCCGACGATGATGGCTCTGAGCGCTGGGTGCCCGGCCCGGAGCTG
GAGGCCTTCAAGGGGAACTGGATGACGCTGGCGCGAAAGAGGACGGGCAG
GACCGCGGGCGGGGTGTCTGCTGCTGCTGCTGCTGCCAAGGCCAAGGCCA
AGGGAGGCGGCCACGGGGGGATGGCGAGGGATCTTACCCCCGCGGCCAAC
CGGCCGACCCTCGCCCTGCAGTCGAACGTGAACGCCAGCATAACGGCACC
CGGGGCCGCTCCGCCGGCTTCCGGGGGAGCTACCGCCGCCGCGGGGGATG
CCAAGGCCGAAGAACAAGACAACGGCGCCGACGATGATGGCTCTGAGCGC
TGGGTGCCCGGCCCGGAGCTGGAGGCCTTCAAGGGGAACTGGATGACGCT
GGCGCGAAAGAGGACGGGCAGGACCGCGGGCGGGGTGTCTGCTGCTGCTG
CTGCTGCCAAGGCCAAGGCCAAGGGAGGCGGCCACGGGGGGATGGCGAGG
GATCTTACCCCCGCGGCCAACCGGCCGACCCTCGCCCTGCAGTCGAACCT
GAACGCGGTGTTGACGCAGGCCAAGAGGCAGCTGCTGCCCGATCTCGTGC
TGGAGGTCGACGAGAAGCTGAACGCGGTGTTGACGCAGGCCAAGAGGCAG
CTGCTGCCCGATCTCGTGCTGGAGGTCGACGAGAAGGCGGGGCCGGTTAG
CGTGGAGGAGAGGAAGGCGAAGGATGCCGCCAAGAGGAAGATCGTCATGT
CCGCGCTAGAGCGGGGCCGGTTAGCGTGGAGGAGAGGAAGGCGAAGGATG
CCGCCAAGAGGAAGATCGTCATGTCCGCGCTAGAGTGGGAGCAGGAGGAA
ATGGACGAGCAGCGAACGGCGGTGACTCGGAAGGTGGGAGCAGGAGGAAA
TGGACGAGCAGCGAACGGCGGTGACTCGGAAGCTGAGGGCAGGGATGACC
ATCGAGCAGATGGACCCCATCGCCGCCGTGCGCAAGCAGCGTCTGAAAAA
GGGGACGTGGAAGGCCGAGCGCCGCCGCCTCTTGGCGCTCGAGAAGAAGC
TGAGGGCAGGGATGACCATCGAGCAGATGGACCCCATCGCCGCCGTGCGC
AAGCAGCGTCTGAAAAAGGGGACGTGGAAGGCCGAGCGCCGCCGCCTCTT
GGCGCTCGAGAAGAAGATGTACAGCGACCAGCAGGCGGGCCTCGACCATG
ATGACACGCCAGAGCACGACGCGCCCGAGCTGATCGACGACGTTTTGGAG
AGCGAGGTTGTCAGGAGAAGAGATGTACAGCGACCAGCAGGCGGGCCTCG
ACCATGATGACACGCCAGAGCACGACGCGCCCGAGCTGATCGACGACGTT
TTGGAGAGCGAGGTTGTCAGGAGAAGAGCTGACGAGTTCTACGCCAAGGA
AAAAGACCGCATCAAGAGAGAGGCCAAGCTGCAGGCCGCCGCGGCCGCCA
CCGCCAAGGCTGCGAAAGAGGCCAAGGCTTAACTGACGAGTTCTACGCCA
AGGAAAAAGACCGCATCAAGAGAGAGGCCAAGCTGCAGGCCGCCGCGGCC
GCCACCGCCAAGGCTGCGAAAGAGGCCAAGGCTTAA
back to top