mRNA_C-linearis_contig106.1004.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.1004.1
Unique NamemRNA_C-linearis_contig106.1004.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig106.1004.1 vs. uniprot
Match: A0A6H5KLZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ5_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.210e-13
Identity = 54/124 (43.55%), Postives = 68/124 (54.84%), Query Frame = 2 
Query:  347 KRRFGADAALSRCSPLATAMVTGSTRTRGDNVAGRP----RPQTAEEKHRAEGVGMVENDPVLKEEINQKLGVSDEGRVDAVHAENTRAMATSLAALELNCKSNIGRVAYNNRIGGCSWGRGAH 706
            + R  AD  ++   P+  A+ +G    RG   A RP    R  T  EK RA+ + MV  DPV +EE+   LGV     V AVHAENTR MA SLAAL+   +SNIGRVAY   +   + G G H
Sbjct:   35 RTRVNADLEVAASDPVQAAITSGP---RGGEAAPRPAKAPRKPTRVEKRRADVLEMVRKDPVSEEEMRTMLGVQGLEGVAAVHAENTRTMAASLAALKGKSQSNIGRVAYTTVLAAVA-GAGEH 154
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BLAST of mRNA_C-linearis_contig106.1004.1 vs. uniprot
Match: A0A6H5K614_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K614_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.640e-11
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 2 
Query:  473 EKHRAEGVGMVENDPVLKEEINQKLGVSDEGRVDAVHAENTRAMATSLAALELNCKSNIGRVAYNNRIGGCSWGRGAH 706
            EK RA+ + MV  DPVL+EE+   LGV     V A HAENTRAMA SLAAL+   +SNIGRVAY   +   + G G H
Sbjct:   22 EKRRADVLEMVRKDPVLEEEMRTVLGVQGLEGVAAAHAENTRAMAASLAALKGKSQSNIGRVAYTTVLAAVA-GAGEH 98
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BLAST of mRNA_C-linearis_contig106.1004.1 vs. uniprot
Match: A0A6H5J5R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5R2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 9.230e-10
Identity = 38/69 (55.07%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:  500 MVENDPVLKEEINQKLGVSDEGRVDAVHAENTRAMATSLAALELNCKSNIGRVAYNNRIGGCSWGRGAH 706
            MV  DPVL+EE+   LGV     V A HAENTRAMA SLAAL+   +SNIGRVAY   +   + G G H
Sbjct:    1 MVRKDPVLEEEMRTMLGVQGLEGVAAAHAENTRAMAASLAALKGKSQSNIGRVAYTTVLAAVA-GAGEH 68
[Close]
BLAST of mRNA_C-linearis_contig106.1004.1 vs. uniprot
Match: A0A6H5L5A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.080e-5
Identity = 32/95 (33.68%), Postives = 52/95 (54.74%), Query Frame = 2 
Query:  455 RPQTAEEKHRAEGVGMVENDPVLKEEINQKL--GVSDEG--RVDAVHAENTRAMATSLAALELNCKSNIGRVAYNNRIGGCSWGRGAHMLPRESV 727
            R +   EK R+  + +++NDP+L E++   L  G +++   +V A+ A NTRA+  SL AL+ +C S+IG   Y   +   + G GAH      V
Sbjct:   14 REEAVAEKRRSSAMDLMQNDPMLMEQVRAMLDAGAAEQAAAKVAAIDAANTRALRASLQALKQHCNSSIGWTTYQTALAVAA-GAGAHTCTDTDV 107
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KLZ5_9PHAE4.210e-1343.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K614_9PHAE6.640e-1153.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5R2_9PHAE9.230e-1055.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5A0_9PHAE3.080e-533.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:430331..431259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size743
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.1004.1prot_C-linearis_contig106.1004.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 430344..430856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.356353-UTR-C-linearis_contig106:430330..4303431622927402.356353-UTR-C-linearis_contig106:430330..430343Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 430331..430343 -
1690879680.278286-UTR-C-linearis_contig106:430330..4303431690879680.278286-UTR-C-linearis_contig106:430330..430343Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 430331..430343 -
1622927402.4346673-UTR-C-linearis_contig106:430856..4312591622927402.4346673-UTR-C-linearis_contig106:430856..431259Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 430857..431259 -
1690879680.305148-UTR-C-linearis_contig106:430856..4312591690879680.305148-UTR-C-linearis_contig106:430856..431259Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 430857..431259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.4126682-CDS-C-linearis_contig106:430343..4306071622927402.4126682-CDS-C-linearis_contig106:430343..430607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 430344..430607 -
1690879680.2870266-CDS-C-linearis_contig106:430343..4306071690879680.2870266-CDS-C-linearis_contig106:430343..430607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 430344..430607 -
1622927402.4250386-CDS-C-linearis_contig106:430793..4308561622927402.4250386-CDS-C-linearis_contig106:430793..430856Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 430794..430856 -
1690879680.2947927-CDS-C-linearis_contig106:430793..4308561690879680.2947927-CDS-C-linearis_contig106:430793..430856Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 430794..430856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.1004.1

>prot_C-linearis_contig106.1004.1 ID=prot_C-linearis_contig106.1004.1|Name=mRNA_C-linearis_contig106.1004.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
MVTGSTRTRGDNVAGRPRPQTAEEKHRAEGVGMVENDPVLKEEINQKLGV
SDEGRVDAVHAENTRAMATSLAALELNCKSNIGRVAYNNRIGGCSWGRGA
HMLPRESV*
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mRNA from alignment at C-linearis_contig106:430331..431259-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.1004.1 ID=mRNA_C-linearis_contig106.1004.1|Name=mRNA_C-linearis_contig106.1004.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=929bp|location=Sequence derived from alignment at C-linearis_contig106:430331..431259- (Chordaria linearis ClinC8C monoicous)
GGACACAACTTCCGTGGTAGCCCGACACAAACTCCAAGAGTTACGGCCCC
GTTGACTTAGCCTGGTGGGGGCCATGCCGTCGCTGGACCCCAAAATCTCA
GTATGTGGGAAAGAAAGAGTGGTGAAACACACGTGGACAAAGCACCCCCA
CGGGTACACTTTGATCTCGGTGCTGTTGAAAGCGGGCTCCAAACAGCAAG
CTGGGATTGAGCACTGTGGTTGTTAGGGATGAGTCGAGGGTGGAGGAAGT
TGGAAAAGAGCATGTTGATACCCTCAAGAGCCGAGCAGAACGACGAACCA
GCAGCACATCACCAGCAGCAGCGGCGGCAGCAGCGGCCACTCCGCCAAAA
GGAGGTTCGGCGCAGACGCAGCGCTCTCACGCTGCTCGCCTCTGGCAACG
GCGATGGTGACCGGGTCCACAAGGACACGTGGGGATAATGTGGCAGGACG
ACCACGACCGCAAACGGTGAGTTCACGTGTCAAGTGCAGCACAAATAAAG
CGTCTGCTGTAGGCGGGGTGTCGTCACTGGTGGGGTGTGCCGCGCGGGCT
ACCGGCCTCTGTTACATGTACACACCGTTTGCACTCCGCGCGACATTACT
CATTTTGGCATGCTTTCTCACTTCTCTGCGAACAATATTGCTGCTGCAAC
AGGCGGAAGAAAAGCACCGCGCTGAGGGAGTAGGGATGGTGGAGAACGAC
CCAGTGTTGAAGGAGGAGATCAACCAAAAGCTAGGGGTGTCAGACGAGGG
GCGCGTAGATGCAGTCCATGCGGAGAATACTCGCGCAATGGCTACTTCTT
TGGCGGCGTTGGAGCTGAACTGCAAGAGCAACATCGGCCGCGTCGCGTAC
AACAACCGTATTGGCGGCTGCAGCTGGGGCAGGGGAGCACACATGCTCCC
CAGAGAATCCGTGTGACCCCGCTCACCGC
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Coding sequence (CDS) from alignment at C-linearis_contig106:430331..431259-

>mRNA_C-linearis_contig106.1004.1 ID=mRNA_C-linearis_contig106.1004.1|Name=mRNA_C-linearis_contig106.1004.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig106:430331..431259- (Chordaria linearis ClinC8C monoicous)
ATGGTGACCGGGTCCACAAGGACACGTGGGGATAATGTGGCAGGACGACC
ACGACCGCAAACGATGGTGACCGGGTCCACAAGGACACGTGGGGATAATG
TGGCAGGACGACCACGACCGCAAACGGCGGAAGAAAAGCACCGCGCTGAG
GGAGTAGGGATGGTGGAGAACGACCCAGTGTTGAAGGAGGAGATCAACCA
AAAGCTAGGGGTGTCAGACGAGGGGCGCGTAGATGCAGTCCATGCGGAGA
ATACTCGCGCAATGGCTACTTCTTTGGCGGCGTTGGAGCTGAACTGCAAG
AGCAACATCGGCCGCGTCGCGTACAACAACCGTATTGGCGGCTGCAGCTG
GGGCAGGGGAGCACACATGCTCCCCAGAGAATCCGTGTGAGCGGAAGAAA
AGCACCGCGCTGAGGGAGTAGGGATGGTGGAGAACGACCCAGTGTTGAAG
GAGGAGATCAACCAAAAGCTAGGGGTGTCAGACGAGGGGCGCGTAGATGC
AGTCCATGCGGAGAATACTCGCGCAATGGCTACTTCTTTGGCGGCGTTGG
AGCTGAACTGCAAGAGCAACATCGGCCGCGTCGCGTACAACAACCGTATT
GGCGGCTGCAGCTGGGGCAGGGGAGCACACATGCTCCCCAGAGAATCCGT
GTGA
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