mRNA_C-linearis_contig105.957.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.957.1
Unique NamemRNA_C-linearis_contig105.957.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 6.480e-100
Identity = 145/176 (82.39%), Postives = 154/176 (87.50%), Query Frame = 1 
Query:    1 MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNWSEQERHRGCVPISPVDTTWQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
            ML+ NLYQ++GLVNGIRGE VELV A+ APPPK PLYVVVKF GYSGG WS QER+R CVPISPVDTTWQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA  T  KYT  GVF A
Sbjct:  110 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 285
[Close]
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 1.510e-97
Identity = 145/176 (82.39%), Postives = 154/176 (87.50%), Query Frame = 1 
Query:    1 MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNWSEQERHRGCVPISPVDTTWQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
            ML+ NLYQ++GLVNGIRGE VELV A+ APPPK PLYVVVKF GYSGG WS QER+R CVPISPVDTTWQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA  T  KYT  GVF A
Sbjct:  284 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 459
[Close]
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 2.630e-97
Identity = 145/176 (82.39%), Postives = 154/176 (87.50%), Query Frame = 1 
Query:    1 MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNWSEQERHRGCVPISPVDTTWQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
            ML+ NLYQ++GLVNGIRGE VELV A+ APPPK PLYVVVKF GYSGG WS QER+R CVPISPVDTTWQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA  T  KYT  GVF A
Sbjct:    1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 176
[Close]
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 3.250e-82
Identity = 132/154 (85.71%), Postives = 140/154 (90.91%), Query Frame = 1 
Query:    1 MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNWSEQERHRGCVPISPVDTTWQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEE 462
            ML+ NLYQ++GLVNGIRGE VELV A+ APPPK PLYVVVKF GYSGG WS QER+R CVPISPVDTTWQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE
Sbjct: 1415 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 1568
[Close]
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 2.460e-57
Identity = 91/108 (84.26%), Postives = 95/108 (87.96%), Query Frame = 1 
Query:  205 WQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
            WQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDLI+EPMSFDRIGNLGN+ TMK RLQEE+RL ELA  T  +YT  GVFGA
Sbjct:    2 WQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGELARTTRVRYTDMGVFGA 109
[Close]
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 2.740e-56
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:  208 QDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
            +DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA  T  KYT  GVF A
Sbjct:    8 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 114
[Close]
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.990e-55
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:  208 QDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
            +DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA  T  KYT  GVF A
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 112
[Close]
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 2.910e-55
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:  208 QDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
            +DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA  T  KYT  GVF A
Sbjct:   72 KDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 178
[Close]
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 6.900e-54
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:  208 QDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
            +DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA  T  KYT  GVF A
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 112
[Close]
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 7.030e-51
Identity = 89/106 (83.96%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:  211 DGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
            DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA  T  KYT  GVF A
Sbjct:  350 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 455
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE6.480e-10082.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE1.510e-9782.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE2.630e-9782.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE3.250e-8285.71ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5K214_9PHAE2.460e-5784.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSF1_9PHAE2.740e-5683.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.990e-5583.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE2.910e-5583.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE6.900e-5483.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8Y8_9PHAE7.030e-5183.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:457922..458455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score127.5
Seed ortholog evalue6.3e-27
Seed eggNOG ortholog400682.PAC_15726636
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGs3A1N8@33154,3BR8V@33208,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size534
Cds size534
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927396.7431967-CDS-C-linearis_contig105:457921..4584551622927396.7431967-CDS-C-linearis_contig105:457921..458455Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 457922..458455 -
1690879676.1692119-CDS-C-linearis_contig105:457921..4584551690879676.1692119-CDS-C-linearis_contig105:457921..458455Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 457922..458455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.957.1prot_C-linearis_contig105.957.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 457922..458455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.957.1

>prot_C-linearis_contig105.957.1 ID=prot_C-linearis_contig105.957.1|Name=mRNA_C-linearis_contig105.957.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=178bp
MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNW
SEQERHRGCVPISPVDTTWQDGGAQVRTQLPLRLCWAITMHKSQGQTLLK
AVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKAR
LQEEIRLWELASETSAKYTARGVFGAG*
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mRNA from alignment at C-linearis_contig105:457922..458455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.957.1 ID=mRNA_C-linearis_contig105.957.1|Name=mRNA_C-linearis_contig105.957.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at C-linearis_contig105:457922..458455- (Chordaria linearis ClinC8C monoicous)
ATGCTCACGAACAACCTGTATCAAGAACTAGGACTAGTCAACGGTATTCG
GGGGGAATTCGTGGAGTTGGTGTACGCGGAGGGTGCGCCCCCGCCCAAGC
CTCCGCTCTATGTCGTCGTCAAGTTCACAGGGTACTCGGGGGGTAACTGG
TCCGAGCAGGAGAGGCACAGAGGTTGTGTTCCTATTTCTCCCGTGGACAC
CACTTGGCAGGACGGGGGGGCGCAAGTCAGGACGCAGCTGCCCCTCAGAC
TCTGTTGGGCGATCACAATGCACAAGTCCCAGGGTCAGACCCTTCTCAAG
GCCGTCATAGGCTTAGGGCCCAAAGAAGCCTGCACCGGGCTTACTTTCGT
CTGTCTCAGTAGGGCCAAGAGGACTGTCGACCTCATCATCGAGCCAATGA
GTTTCGACAGGATAGGTAACCTTGGGAACAACCTGACCATGAAGGCTAGG
CTGCAGGAAGAGATTAGGCTGTGGGAGTTGGCGTCTGAGACCTCCGCCAA
ATACACGGCGAGGGGCGTCTTCGGCGCCGGATAG
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Coding sequence (CDS) from alignment at C-linearis_contig105:457922..458455-

>mRNA_C-linearis_contig105.957.1 ID=mRNA_C-linearis_contig105.957.1|Name=mRNA_C-linearis_contig105.957.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at C-linearis_contig105:457922..458455- (Chordaria linearis ClinC8C monoicous)
ATGCTCACGAACAACCTGTATCAAGAACTAGGACTAGTCAACGGTATTCG
GGGGGAATTCGTGGAGTTGGTGTACGCGGAGGGTGCGCCCCCGCCCAAGC
CTCCGCTCTATGTCGTCGTCAAGTTCACAGGGTACTCGGGGGGTAACTGG
TCCGAGCAGGAGAGGCACAGAGGTTGTGTTCCTATTTCTCCCGTGGACAC
CACTTGGCAGGACGGGGGGGCGCAAGTCAGGACGCAGCTGCCCCTCAGAC
TCTGTTGGGCGATCACAATGCACAAGTCCCAGGGTCAGACCCTTCTCAAG
GCCGTCATAGGCTTAGGGCCCAAAGAAGCCTGCACCGGGCTTACTTTCGT
CTGTCTCAGTAGGGCCAAGAGGACTGTCGACCTCATCATCGAGCCAATGA
GTTTCGACAGGATAGGTAACCTTGGGAACAACCTGACCATGAAGGCTAGG
CTGCAGGAAGAGATTAGGCTGTGGGAGTTGGCGTCTGAGACCTCCGCCAA
ATACACGGCGAGGGGCGTCTTCGGCGCCGGATAGATGCTCACGAACAACC
TGTATCAAGAACTAGGACTAGTCAACGGTATTCGGGGGGAATTCGTGGAG
TTGGTGTACGCGGAGGGTGCGCCCCCGCCCAAGCCTCCGCTCTATGTCGT
CGTCAAGTTCACAGGGTACTCGGGGGGTAACTGGTCCGAGCAGGAGAGGC
ACAGAGGTTGTGTTCCTATTTCTCCCGTGGACACCACTTGGCAGGACGGG
GGGGCGCAAGTCAGGACGCAGCTGCCCCTCAGACTCTGTTGGGCGATCAC
AATGCACAAGTCCCAGGGTCAGACCCTTCTCAAGGCCGTCATAGGCTTAG
GGCCCAAAGAAGCCTGCACCGGGCTTACTTTCGTCTGTCTCAGTAGGGCC
AAGAGGACTGTCGACCTCATCATCGAGCCAATGAGTTTCGACAGGATAGG
TAACCTTGGGAACAACCTGACCATGAAGGCTAGGCTGCAGGAAGAGATTA
GGCTGTGGGAGTTGGCGTCTGAGACCTCCGCCAAATACACGGCGAGGGGC
GTCTTCGGCGCCGGATAG
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