mRNA_C-linearis_contig105.957.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 298 bits (764), Expect = 6.480e-100 Identity = 145/176 (82.39%), Postives = 154/176 (87.50%), Query Frame = 1 Query: 1 MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNWSEQERHRGCVPISPVDTTWQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
ML+ NLYQ++GLVNGIRGE VELV A+ APPPK PLYVVVKF GYSGG WS QER+R CVPISPVDTTWQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA T KYT GVF A
Sbjct: 110 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 285
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 298 bits (764), Expect = 1.510e-97 Identity = 145/176 (82.39%), Postives = 154/176 (87.50%), Query Frame = 1 Query: 1 MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNWSEQERHRGCVPISPVDTTWQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
ML+ NLYQ++GLVNGIRGE VELV A+ APPPK PLYVVVKF GYSGG WS QER+R CVPISPVDTTWQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA T KYT GVF A
Sbjct: 284 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 459
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 298 bits (764), Expect = 2.630e-97 Identity = 145/176 (82.39%), Postives = 154/176 (87.50%), Query Frame = 1 Query: 1 MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNWSEQERHRGCVPISPVDTTWQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
ML+ NLYQ++GLVNGIRGE VELV A+ APPPK PLYVVVKF GYSGG WS QER+R CVPISPVDTTWQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA T KYT GVF A
Sbjct: 1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 176
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 275 bits (702), Expect = 3.250e-82 Identity = 132/154 (85.71%), Postives = 140/154 (90.91%), Query Frame = 1 Query: 1 MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNWSEQERHRGCVPISPVDTTWQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEE 462
ML+ NLYQ++GLVNGIRGE VELV A+ APPPK PLYVVVKF GYSGG WS QER+R CVPISPVDTTWQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE
Sbjct: 1415 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 1568
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE) HSP 1 Score: 187 bits (476), Expect = 2.460e-57 Identity = 91/108 (84.26%), Postives = 95/108 (87.96%), Query Frame = 1 Query: 205 WQDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
WQDGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDLI+EPMSFDRIGNLGN+ TMK RLQEE+RL ELA T +YT GVFGA
Sbjct: 2 WQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGELARTTRVRYTDMGVFGA 109
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE) HSP 1 Score: 182 bits (461), Expect = 2.740e-56 Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 1 Query: 208 QDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
+DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA T KYT GVF A
Sbjct: 8 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 114
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE) HSP 1 Score: 182 bits (461), Expect = 1.990e-55 Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 1 Query: 208 QDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
+DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA T KYT GVF A
Sbjct: 6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 112
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE) HSP 1 Score: 181 bits (460), Expect = 2.910e-55 Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 1 Query: 208 QDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
+DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA T KYT GVF A
Sbjct: 72 KDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 178
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE) HSP 1 Score: 182 bits (461), Expect = 6.900e-54 Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 1 Query: 208 QDGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
+DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA T KYT GVF A
Sbjct: 6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 112
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE) HSP 1 Score: 181 bits (459), Expect = 7.030e-51 Identity = 89/106 (83.96%), Postives = 93/106 (87.74%), Query Frame = 1 Query: 211 DGGAQVRTQLPLRLCWAITMHKSQGQTLLKAVIGLGPKEACTGLTFVCLSRAKRTVDLIIEPMSFDRIGNLGNNLTMKARLQEEIRLWELASETSAKYTARGVFGA 528
DGG QVRTQLPLRLCWAITMHKSQGQTL KAVI LGPKEACTGLTFVCLSRAKR VDL++EPMSFDRIGNLGN+ TMKARLQEE+RL ELA T KYT GVF A
Sbjct: 350 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSA 455 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.957.1 >prot_C-linearis_contig105.957.1 ID=prot_C-linearis_contig105.957.1|Name=mRNA_C-linearis_contig105.957.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=178bp MLTNNLYQELGLVNGIRGEFVELVYAEGAPPPKPPLYVVVKFTGYSGGNWback to top mRNA from alignment at C-linearis_contig105:457922..458455- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.957.1 ID=mRNA_C-linearis_contig105.957.1|Name=mRNA_C-linearis_contig105.957.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at C-linearis_contig105:457922..458455- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:457922..458455- >mRNA_C-linearis_contig105.957.1 ID=mRNA_C-linearis_contig105.957.1|Name=mRNA_C-linearis_contig105.957.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at C-linearis_contig105:457922..458455- (Chordaria linearis ClinC8C monoicous)back to top |