mRNA_C-linearis_contig105.946.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.946.1
Unique NamemRNA_C-linearis_contig105.946.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 4.110e-81
Identity = 168/303 (55.45%), Postives = 204/303 (67.33%), Query Frame = 1 
Query:    1 QVCIAGALAKGDDDEGPCPKCKEPVKLDDLSPIGRGSGGDGST---------------------------------QTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVSGGGSAGS----SSTAQHGIPGSLARDVAKHLKVEEYNSLFGVDHTAGVP---DKKPS*TRRRP 789
            Q CI+  L K  DDEGPCP+CK  V+L DL+ +G GS   G                                    + ++    G++METKLKALVEKL+ IH KD +SKSLVFSQ+N SLEWLK  LPK+GF+FRTLTG MSR QRTA+L AFA DPPTTVFLLSVR+GAVGINLTQAN++FLLEPLLNLALEKQAIGRV+RLGQTRPVTV     TKL+L DS+ETRILA+Q++Q + G ++ +    SS++  G+ G++ARD AK LK+ EYN+LFGV   AG     D KP  T   P
Sbjct: 1009 QACISSVLTKSKDDEGPCPRCKTAVRLTDLTSVGGGSVATGXXXXXXXXKPEYXXXXXXXXXXXXXXXXXXXPXXXHSHSSSPGAGVVMETKLKALVEKLAGIHAKDPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV-----TKLVLKDSIETRILALQKKQATEGSASAAVGAPSSSSSDGVAGNIARDNAKDLKIGEYNALFGVSEGAGDSFGGDSKPHTTSSYP 1306
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BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 2.670e-78
Identity = 156/281 (55.52%), Postives = 193/281 (68.68%), Query Frame = 1 
Query:    1 QVCIAGALAKGDDDEGPCPKCKEPVKLDDLSPIG------------------------------------RGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVSGGGSAGSSSTAQHGIPGSLARDVAKHLKVEEYNSLFGV 735
            Q CI+  L K +DD+GPCPKCK+ V+LDDL+ +G                                                 +    G++METKLKALVE L+ IH KD +SKSLVFSQ+N SLEWLK  LPK+GF+FRTLTG MSR QRTA+L AFA DPPTTVFLLSVR+GAVGINLTQAN++FLLEPLLNLALEKQA+GRV+RLGQTRPVTV     TKL+L DS+ETRILA+Q++Q + G ++ +     +GI G++ARD AK+LK++EYN+LFGV
Sbjct: 1042 QACISSVLTKKEDDQGPCPKCKKTVRLDDLTHVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPGTGVVMETKLKALVEMLAGIHAKDPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGSMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAVGRVYRLGQTRPVTV-----TKLVLKDSIETRILALQKKQATEGSASAAVGAGSNGIAGNIARDNAKNLKIDEYNALFGV 1317
[Close]
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: D7G0T7_ECTSI (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T7_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.900e-72
Identity = 148/249 (59.44%), Postives = 166/249 (66.67%), Query Frame = 1 
Query:    1 QVCIAGALAKGDDD-EGPCPKCKEPVKLDDLSPIGRGSGGDGSTQTGT-ADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVSGGGSAGSSS-TAQHGIPGSLARDVAKHLKVEEYNSLFGVD 738
            + CIAGALAKGDDD EGPCPKCK+ V L DL+PIG G G  GS+  G  +D  PG++METKLKALVEKL+DI                                                  AFANDPPTTVFLLSVRAGAVGINLTQANH+FLLEP+LNLALEKQAIGRVHRLGQTRPVTV     TKL+LADSVETRILAM++ Q  GGGSAGSS   AQ G  GSLAR+ A+HLKV EY+  FG++
Sbjct:   28 EACIAGALAKGDDDDEGPCPKCKKTVTLGDLTPIGGGGGDFGSSAGGNGSDNRPGVMMETKLKALVEKLADIQAN-----------------------------------------------AFANDPPTTVFLLSVRAGAVGINLTQANHVFLLEPMLNLALEKQAIGRVHRLGQTRPVTV-----TKLVLADSVETRILAMRKMQARGGGSAGSSLFNAQGGPAGSLAREDARHLKVGEYDEFFGLN 224
[Close]
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A835YWG4_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG4_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.120e-53
Identity = 129/283 (45.58%), Postives = 171/283 (60.42%), Query Frame = 1 
Query:    4 VCIAGALAKGDDDEGPCPKCKEPVKLDDLSPIGRGSG--------GDGSTQTGTADQSP------------------------------GILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVSGGGSAGSSSTAQHGIPGSLARDVAKHLKVEEYNSLFGVD 738
            +CI   + K  D +G CPKCK+ V L+ +  +G G+         G  +T  G A   P                              G++ME+KLK LV  L+ I  KDA++K+LVFSQ+  +L +L+  LP+ GFEFRTLTG MSR+QRT +L+ F +DPPTT+FLLSVR+GA GINLT A+H+F+LEP LNLALE QAIGRVHRLGQTR V      V KL +  SVE+RI+AMQ  + S   + GS         GS+++D AK L++++YN LF VD
Sbjct: 1247 LCITAHVTKKAD-KGTCPKCKKVVSLESIQLVGAGAXXXXXXXXEGSAATAGGGAPMGPNAGGVQGXXXXXXXXXXXXXXXXXDAPQQGGVVMESKLKVLVGMLAAIRGKDANAKALVFSQFTSTLRYLQRELPRHGFEFRTLTGDMSRRQRTKALEDFRSDPPTTIFLLSVRSGACGINLTAASHVFMLEPCLNLALEAQAIGRVHRLGQTRAV-----HVVKLYMEASVESRIIAMQTAK-SDRAAQGSDEDRPATAAGSISKDGAKELRIKDYNDLFAVD 1522
[Close]
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S0GC86_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GC86_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.120e-47
Identity = 95/193 (49.22%), Postives = 128/193 (66.32%), Query Frame = 1 
Query:   43 EGPCPKCKEPVKLDDLSPIGRGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVS 621
            +GPCP C+ PVK+  L  +   S     T     +     L  +K   LV +L  I   + +SKSLVFSQ+  +L+W++  LPK+GF FRTL+G MS  +R  +L+ F +DPPTTVFLLS+R+GAVGINLTQAN +F++EP LN ALE QAIGRVHRLGQ RPV      V +L++ DS++TR++   ER+ S
Sbjct:    1 DGPCPVCRAPVKVSTLKRVLMSS-----TAAKEKNNEDTFLFRSKYLGLVTELEKIRDTEPNSKSLVFSQFTSTLKWMQEELPKRGFSFRTLSGDMSMPKRAQALREFQSDPPTTVFLLSMRSGAVGINLTQANRVFIMEPALNPALEAQAIGRVHRLGQNRPV-----EVIRLIIEDSIDTRLMKYLERKYS 183
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BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S2CG02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG02_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.070e-47
Identity = 91/154 (59.09%), Postives = 117/154 (75.97%), Query Frame = 1 
Query:  160 ILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVS 621
            ++METKLKAL+ +L+ +  KDA+SK L+FSQ+  +L WL+  LP  G  FRTLTG+M++KQR  +L+ F  DPPTTVFLLSVRAGAVGINLTQANH+F+LEP+LN ALE QA+GRVHR+GQ R V V     TK ++ +SVE R+L +   Q S
Sbjct:    5 VVMETKLKALMAELTKVRCKDATSKCLIFSQFQATLTWLQQMLPAHGCSFRTLTGKMTQKQRARALRDFQEDPPTTVFLLSVRAGAVGINLTQANHVFILEPILNPALELQAVGRVHRMGQQRHVYV-----TKFVMQNSVEERMLNLLNLQTS 153
[Close]
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S4MXR8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXR8_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.420e-46
Identity = 114/274 (41.61%), Postives = 163/274 (59.49%), Query Frame = 1 
Query:    7 CIAGALAKGDDDEGPCPKCKEPVKLDDL--SPIGRGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQV-------------SGGGSAGS-------SSTAQHGIPG--------SLARDVAKHLKVEEYNSLFGVD 738
            CI G L+  DD  GPCP C+  VK+  L  + +      DG  +   A   PG+  ++KL  L+ +L  I + +  +KSLVFSQ+N +++W+K  LPK GF+FRTL G M+ K R  +L+ F +DPPTT+FLLS+RAGAVGINLTQAN +FL+EP +N ALE QAIGRVHRLGQ +PV      + +L++ DS+E+R++ + E++              S GG  G+       S  A    PG        S+ +D A  + V+E++ LFG +
Sbjct: 1262 CIEGILSAEDDSTGPCPICRSEVKMSKLRRAILPEPEEEDGGKKGKKAKAKPGVAFKSKLNVLLRELERIRSDEPDAKSLVFSQFNSTIKWMKAELPKHGFQFRTLDGSMNMKDRAKALREFQSDPPTTIFLLSMRAGAVGINLTQANRVFLMEPAMNPALEAQAIGRVHRLGQLKPV-----EIIRLVICDSLESRMVKLLEKKYGKKHVGEDGDKNDSSGGEEGNDDEDGAASEAAVKPAPGQGSDTAVGSITKDKAA-VTVDEFDLLFGCE 1529
[Close]
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S2UI45_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI45_9STRA)

HSP 1 Score: 176 bits (445), Expect = 6.220e-46
Identity = 91/201 (45.27%), Postives = 129/201 (64.18%), Query Frame = 1 
Query:    7 CIAGALAKGDDDEGPCPKCKEPVKLDDLSPIGRGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQE 609
            CI G +   DD  G CP+C + V +  L       G   +      D  PGI+ ++K + L+ +L+ I  ++  +KSLVFSQ+  +L W++  LPK GF+FRTL+G M   +R  +L+ F NDPPTT+FLLS+RAGA GINLTQAN +FL+EP +N ALE QAIGRV+RLGQ + V      + ++L+ +SVETR+  + E
Sbjct:   21 CIEGVIYSKDDRSGNCPQCNQTVTIKTLQKAAMPDGNVSTPVVAAGD--PGIVFKSKFRRLLTELTRIRDEEPEAKSLVFSQFRSTLSWMQEELPKHGFQFRTLSGDMPMSKRACALRDFQNDPPTTIFLLSIRAGACGINLTQANRVFLMEPAMNPALEAQAIGRVYRLGQRKNV-----EIVRMLMTNSVETRLTKLIE 214
[Close]
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S2JRT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRT6_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.050e-42
Identity = 90/197 (45.69%), Postives = 128/197 (64.97%), Query Frame = 1 
Query:    7 CIAGALAKGDDDEGPCPKCKEPVKLDDLSPIGRGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRIL 597
            CI G +   D   GPCP C+  + L+ L  +       G  +    D SP  + ++K + L+ +L  I  +D  +KSL+FSQ+  +L+WL+  L K GF+FRTL+G M+ K R  +L+ F  DPPTTVFLLS+RAGAVGINLTQAN +F+LEP +N ALE QA+GRVHRLGQT+ V      + +L++ +S+E R++
Sbjct:  459 CIEGVITAMDSSTGPCPICRREINLEMLRQVTFADNEVGDEENEGRDDSPDFVFKSKFEVLLRELRLIRVEDPEAKSLIFSQFKTTLKWLQTELVKHGFQFRTLSGDMTMKARAKALRDFQADPPTTVFLLSMRAGAVGINLTQANRVFILEPAINPALETQAVGRVHRLGQTKSV-----EIVRLVVKESIEERMI 650
[Close]
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A1E7F8K5_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F8K5_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.400e-40
Identity = 84/146 (57.53%), Postives = 108/146 (73.97%), Query Frame = 1 
Query:  160 ILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRIL 597
                +K + L+++L  I   D SSKSLVFSQ+N +LE+L+  LPK GF+FRTL+G MS KQR  +L+ F NDPPTTVFLLS+RAGAVGINLTQAN +FL+EP  N ALE QAIGRVHRLGQ R V     ++ +L++ +S E R++
Sbjct:   64 FTFRSKFRFLLQELEIIRDNDVSSKSLVFSQFNSTLEYLQTELPKHGFQFRTLSGSMSMKQRAKALRDFQNDPPTTVFLLSMRAGAVGINLTQANRVFLMEPSFNPALEAQAIGRVHRLGQKREV-----NILRLVIKNSFEDRMM 204
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S9_ECTSI4.110e-8155.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW09_9PHAE2.670e-7855.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T7_ECTSI1.900e-7259.44Helicase C-terminal domain-containing protein n=1 ... [more]
A0A835YWG4_9STRA1.120e-5345.58SNF2 family N-terminal domain-containing protein n... [more]
A0A7S0GC86_9STRA1.120e-4749.22Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2CG02_9STRA2.070e-4759.09Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4MXR8_9STRA1.420e-4641.61Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2UI45_9STRA6.220e-4645.27Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2JRT6_9STRA1.050e-4245.69Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1E7F8K5_9STRA5.400e-4057.53p-loop containing nucleoside triphosphate hydrolas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:179931..185651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.8
Seed ortholog evalue1.7e-68
Seed eggNOG ortholog2880.D7G0S9
KEGG koko:K01259,ko:K15505,ko:K15711
KEGG ReactionR00135
KEGG Pathwayko00330,map00330
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27,3.4.11.5
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400,ko04121
Exons7
Model size2559
Cds size609
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927394.268385-UTR-C-linearis_contig105:179930..1817151622927394.268385-UTR-C-linearis_contig105:179930..181715Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 179931..181715 -
1690879674.4466774-UTR-C-linearis_contig105:179930..1817151690879674.4466774-UTR-C-linearis_contig105:179930..181715Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 179931..181715 -
1622927394.3552656-UTR-C-linearis_contig105:184968..1849821622927394.3552656-UTR-C-linearis_contig105:184968..184982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 184969..184982 -
1690879674.537161-UTR-C-linearis_contig105:184968..1849821690879674.537161-UTR-C-linearis_contig105:184968..184982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 184969..184982 -
1622927394.3641129-UTR-C-linearis_contig105:185500..1856511622927394.3641129-UTR-C-linearis_contig105:185500..185651Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 185501..185651 -
1690879674.5470607-UTR-C-linearis_contig105:185500..1856511690879674.5470607-UTR-C-linearis_contig105:185500..185651Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 185501..185651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927394.284692-CDS-C-linearis_contig105:181715..1818271622927394.284692-CDS-C-linearis_contig105:181715..181827Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 181716..181827 -
1690879674.461534-CDS-C-linearis_contig105:181715..1818271690879674.461534-CDS-C-linearis_contig105:181715..181827Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 181716..181827 -
1622927394.2985387-CDS-C-linearis_contig105:182166..1822761622927394.2985387-CDS-C-linearis_contig105:182166..182276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 182167..182276 -
1690879674.4722075-CDS-C-linearis_contig105:182166..1822761690879674.4722075-CDS-C-linearis_contig105:182166..182276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 182167..182276 -
1622927394.310524-CDS-C-linearis_contig105:182717..1828041622927394.310524-CDS-C-linearis_contig105:182717..182804Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 182718..182804 -
1690879674.4819236-CDS-C-linearis_contig105:182717..1828041690879674.4819236-CDS-C-linearis_contig105:182717..182804Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 182718..182804 -
1622927394.3209755-CDS-C-linearis_contig105:183740..1838451622927394.3209755-CDS-C-linearis_contig105:183740..183845Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 183741..183845 -
1690879674.4974163-CDS-C-linearis_contig105:183740..1838451690879674.4974163-CDS-C-linearis_contig105:183740..183845Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 183741..183845 -
1622927394.3319075-CDS-C-linearis_contig105:184539..1846801622927394.3319075-CDS-C-linearis_contig105:184539..184680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 184540..184680 -
1690879674.5123477-CDS-C-linearis_contig105:184539..1846801690879674.5123477-CDS-C-linearis_contig105:184539..184680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 184540..184680 -
1622927394.3461628-CDS-C-linearis_contig105:184914..1849681622927394.3461628-CDS-C-linearis_contig105:184914..184968Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 184915..184968 -
1690879674.527558-CDS-C-linearis_contig105:184914..1849681690879674.527558-CDS-C-linearis_contig105:184914..184968Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 184915..184968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.946.1prot_C-linearis_contig105.946.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 181716..184968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.946.1

>prot_C-linearis_contig105.946.1 ID=prot_C-linearis_contig105.946.1|Name=mRNA_C-linearis_contig105.946.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=203bp
METKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRT
LTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEP
LLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQ
VSGGGSAGSSSTAQHGIPGSLARDVAKHLKVEEYNSLFGVDHTAGVPDKK
PS*
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mRNA from alignment at C-linearis_contig105:179931..185651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.946.1 ID=mRNA_C-linearis_contig105.946.1|Name=mRNA_C-linearis_contig105.946.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5721bp|location=Sequence derived from alignment at C-linearis_contig105:179931..185651- (Chordaria linearis ClinC8C monoicous)
CAGGTGTGCATCGCGGGAGCGTTGGCCAAGGGCGACGACGACGAAGGCCC
ATGTCCCAAGTGCAAAGAGCCGGTAAAGCTTGACGACCTTTCGCCGATCG
GCAGGGGCAGCGGAGGGGACGGATCCACACAGACAGGCACGGCCGACCAA
AGTTTACTCGCGTCTATAACATACGAAGTACATAGATAGGTGTCTTATTG
TCTGCCCTTTCTTTTTTGTGTCTGGCATTCTAGTTATTGGTGTGCGTGTT
GGCCACACGACCTGCAGCTATCGCCACGCACAACACCATGCCAGAGAGCA
AGAATGCCGGACTGACCCAGACATTCTTATAATAGTAGAGCAAACCACAA
GTACTTGAACTGACAGGAATACCTATTGAAGGTTGTTTGAATGCTGGCGG
GAAGTGTCCTTTGTACACTGAGAGATCCTTCGGTGAGGAGGGTGCACCGT
GAGTGAAATCGATGGCACCAACAACAACATGGACAACTTCGACGCCATTT
CGGACGAGGTATCCCTCTCGCCATCAAGCTGGGCGGTGCGACACAGAGTT
ATCTGGTCTGGGCCGGGTCGAACAAGAGGTGGTGAGCGGTGTCGCCGTTT
ATGAGCCTTTTGTACACACGGCATTTCACGCGTCGTCGTACGTTGGCAAA
CTCGCTGACTCGACCTCAGGCCCTGGTATTTTGATGGAGACGAAACTGAA
GGCGTTGGTGGAGAAGCTCAGCGACATCCACACCAAGGTACAGGAAGGGC
CGTGCCGCTTGCCGACTACGCCGCGTTGATGTCTCGCCGACATTAAACCA
TCTCCTAACCCGGGTCTGTCTGATACGGAGCACGGGTAGCTTCGTTGTTT
TTGTGTCGGTATCATTTTTTTACTTTTTTCCTCTGTGAAACAAAACGAAC
ATGAATCCAGTTGTTGTTCACTCCCCGGCCACCACCACCCCCGTACGTTG
GAATCCCACCTTCCCTCAAAGGACGCCTCCTCGAAGAGCCTGGTGTTCTC
GCAGTACAACTGCTCCCTCGAGTGGCTGAAGCACGCCCTGCCCAAGAAGG
GCTTCGAGTTCCGTACCCTCACCGGACAAATGTCCAGGAAGCAGCGCACC
GCCTCGCTTCAGGTATGTACGTAGGTGGTGTACCTGTTCCCTCTGGGAAT
GAAAAGACGGCATAGAGAAATTCGCGAGTGTCATCGGGAGTAGCAACGTA
CGTGGGCCTCTGACTGTTCAAGTCGCAAGATTGATGCCTTTTCCTGTGCA
GTGGTGAGCTCAATAGCGATACAGGCAGGATAAGTTCGATAAAAAAAGCG
ATAATTTCCTTCAATGACCTCTAGACAACTTTTCAGTTGAGGCTGAGCCT
AGTGAACACGTTTATTTCTAATAAATACCTTACGGGATGTACACACCGCA
CCTTCTACGCTCACAAAGGACGGCACCCCCATTTAACGGTTTCGTTCCAC
GTCGCAACGCTGGCTCGCAAAGCCCAAAGCTTCGAGAAAGAACGATGGCT
CATGATTCGAAGAGTGAAATCGTTTAAAGGGTGAGGCGTCCTGCCCACTT
CTTCATGGCATTAGCTCCTCACGGGATTGCTGGGAAAACACGTCAATGAG
GCAATGGCCGCATTGGAAAATGACCGAATAGTTTCAAAATGGGAAGGTCG
ACGAATGAAGCGCGCAATTGATTTACCCCCACGTTGTTTGGTGTCGCGTT
GTAGGAAAACGAAACCTCACGTTGTTTGGTGTCGCGTTGTAGGAAAACGA
AACCTCCTTCTCACACCCACTCCATCCTTTTTATCGGAATTATTTTTCAA
TTAAAGGCGTTCGCCAACGATCCTCCAACGACGGTGTTTCTGCTGTCGGT
CCGGGCTGGGGCTGTGGGGATCAACCTCACTCAGGCCAACCACATCTTCC
TGCTAGAGCCGGTATGAACGCTTGTGAATAGCTGTGGGCTCTTCATTCAC
TGGTGCAATTCATTCATTCACTCAATAGCGGATGCCTGCGGACGCGAATC
TGCACATTGAATCTTCCGGGGGGCACATTCATTTTTATCGTCATTCATTC
CCGGTCCTGGTGTGCCGTAATTCACGCAGGTTTTTAGTGAGTGCCCTTTG
CCGCAGTGCGTTCGAGCCAGAAGGATTTTACAGGGCGCATGACTTTCCGA
TACTCACTCCCAAATTCATTGGGTTTTTTTTTGGCGACGCACGAGCCACC
CGCATAGTATAGAGGGGAAGGATGGTGGTCCTGGTCGCGTTAACGCTCAC
CTGCGCGGTGGTGAATTGATTCACTTCCCACGAAGTTCGATTGCGCGCAA
ACGAGAGCTGACTCAAACGCTCAACCCTGCGGGGATGTGTCGTAGCCGCT
GCGAACGCCTACCTATCCTGGCAGAGATGGCGTTGGGCACAGAAAGCAGT
TGGGCTTTGGTTCCCTTTCGGGAGATTATGAAAGGTTCTGCCGCACGTGG
CGTCTAGTCTGGTTACCGCAGCTCGAGTCGTGGTTGGTCTGAAAAGAACC
AGTTGTCCCGCCGGGCTCTCCGCTCAACGTTCTCGGTCGCGGATTCAGGC
GAAATGTAGCCATTCTAGACCTTCCTACGTTTTTCCGCACGCACGCATAT
CATGTGGATTTTGAACGTTTTCACTCTTCTTTCGCGTTTCACACCTTTTT
TAGGGTAAGCTAACCTGTGACCACGGGAATTGGCCGTGTCTGTTGGATCA
GTACGGACAAAGGGGGGTACTGGGTGGAGAGAGAGACGGGACGGTTTTTA
ATGTGAAGACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACACCTACGTCTTGAATTTCTGCTTGTCTGTGGGGGTTGCGCAGCTG
CTCAATCTGGCTTTGGAGAAGCAGGCGATTGGGAGGGTTCACCGCCTCGG
GCAGACTCGGCCGGTCACGGTACGGTGCTCTTCAGCGCTGTGGAAGACCC
CTGTTGATAGATACCAACGTGATCGCTTCTCGCTTCACTCCAAGACCAAG
AATGACGGGTTGTACAGGCTCATATCATAACGTACTACCACGTAGGTTTT
CCGTTGACACCGACGATAAGGCTCCTGGTTGCGTTGTCTACAACAACATT
TTGGTTGGTAAGTCGTGTTGCTTGATTTCTGACCATCCGCTGTTGCTCTT
CTTCCTGGTCTCGGGCTTCAATGCTCTATTTAGTGATTTTGTATGCCGTG
CAAAGAATGGGGTAGGAGTGCGCGGGACGAAAGAAGCGCCGGTTGATCGT
GAAGATTAGATTAGCGTTCGATATTATTTCCCCAGACGGCCCAATTTGGG
ACATCCAACAACGACATTTTATTCTGGCAACCTCATGATGGTGAACATAT
TCGATAACCAAACCACCCCCTGTAGGTGACCAAGCTGCTACTAGCGGACT
CTGTGGAGACGCGCATCCTTGCCATGCAGGAGCGCCAGGTCAGCGGCGGT
GGCTCGGCTGGATCATCATCCACAGCCCAACACGGGTGAGACGGACAGAC
AGAGTGATTTTGAAAACAAACGTGCACCGCAAGCGTGTACAAGTACAACG
TGTTCTCGACCATGAATTGAACTCATCATGACGAATTATTCTCACCTCGT
TTGCCCTCCGACAAGAATGGCAGACAGATTCAACCGAATTTTCGATCAAA
ACACGAACCGTTTGCCGACAAGAAGATTAAAGTGGGAACGAACAGAACAA
CAGAAAACCAATACCAGGTATCTATCTGCTGGATTCGTTTCCACCCCCCG
ACAGAGAGCGACCCCAGACAACACACCCATCGCCCTTTTCATCTGCCTAC
CGCTCGTCCTTATCTGTCGCGCAGGATTCCCGGCAGCCTTGCCAGGGACG
TGGCGAAGCATCTCAAGGTGGAGGAGTACAACTCGCTGTTCGGGGTCGAC
CACACCGCAGGCGTCCCCGACAAAAAGCCCAGCTGAACGCGAAGAAGGCC
GAAAAGAAAAAAAGCTGGTGGGGGTTGGTGACCAACACTCACTCGTTCGC
TCCTCGCGACCACACACTCGGGCTTGTCTCGTCCCGTCCGTGCGCTACGC
GCGTCTGGCGTATAAAGAAGACAACCCTGAGCGTTCTCCCGGGTTAGTCG
CGAGCACAATTGCAAAGCAGCAGTGGAGGGTTGTTGTTGTCGTCGTGCCT
GTCTGCCTTCCGGATGGGCCAACCCGTCCCTCTCGTGCTCTCAAACGCTG
CGAGAGTGAATGAAGCTTTGAGAGCTGGGAAAATCGGGTCCGTCAGGTTG
TTGAGTCCCCGTTTGTTTATTGGCATTTTTGTAGTTTCCAACACTTACTT
GTTGCTTGTTCAGCTTTGGAGTTGAAGATCGGGCATCGCTTCTTCTTCTT
CTTTTCGTTTTGTTCCGGGTTCGGTGGGGTGCGGGTTGGAACAAAATCGC
CCGCCCCCATTGATCGAGAAGGCGCCTGCTGCCGCGCCTCACGATAGAGA
GGAAGCCAGACATCCTACATGCCCACGCACGAAAAGTTGGGTGGACGATC
CAGATCATCACATACTTCGTACATACATATGGTATAGGCGCAGCGGTGAA
TATCTCTCCCACATACATGCGGTCGTTGGCTCTTTCTTCTTTTCTGGCCC
AAAAGTCGGAAAACTTCATTGAGAGTTTGGTTGTCTACGGTCACAAACAA
ACAACCGTGGTGTTGATGGCCGATTGATTCTGTCTGACGGGGCGAACTGT
ACATGTAGAGCTCTAGGATTTTGTTGGAGTGGTCCATGCCAGCACCCTGA
CGCACGTACGTGCAGGGTTGCCTCGACATCGTTGGGGGACTGCTGCTGTA
GTAGCGGTGCGAAGAGCGACCAAGCCCCGTTTGAAATGTGCGCTGTCTTG
ATCCCCGCGTCTACGGTGTGTGCCTCGGCTATGATACGAGGGGGCACGTA
TCGGGGGAGGAGGAGCCGAGGTGGTCTTGTTTGAGGAAGTTCGTTTCATT
CTTGTCGAGCCCGCTTCATTCAGCAGAAGGGGTCCCAGCTAGCTTGGTTT
GGAGTACTCGATCGTACAAGATTAGGCCTGCACTGCTGTTGTTCTAGTTG
CGGGGTGCCCGCACAAGCAAAGTCGTATATAGGGTGCAGAGACTTTCTTT
TCTCGAGCGTCGCCCAAGCAGGCATCAATGCGTGTCTAAGCTTGGGCCAG
TCAGGTCATCGCAGCGGGATTTATCAACAACAGATAGGTTTGGCTACTTT
TTGTCGGCGATCTTGGTGGCAGGGTTAGGGTTAGGGCGTGTGACTATTCT
TCTTGAAGCATTAATTGTACTATTAGGAAGGACTGTGATGGTTGGTTGAT
TCTTCATGCTTTGTTCTGCACACTTGGGACAGGCTGTCATCTCCCGTAGG
GTTTTGGTTTGGAGGGTGAGTACGCGGCCGTGCTTTCAAAGCGGCACTTG
TATCGGGGGGGCGTTTGGGATTGCCTTGAGTTGCCTAATAGCTGTGGTAA
CCTTGGAGGTTGCTCTCACGGCACGAATATCTGGTTTGGGCAGGGGCGGG
TAGCACAGTGGGGCGCTTCGATGGGCGCTATCGGTGGCCTTATACACAGC
TAGCTGTAGCTGTTGAGGTGTTGGCCTTATGGGCGACGTGGAGTGCATGC
TTCTGGAGTGACCCAGACAAAGACCTTGGGCTGAAGGAGATCAAAGAGGA
AACAATAGAAGGAAACTCGACCGCCCGAATCTGCCTGTCGTCGATGACGC
ACGGCTGGCGGTGCGTTCGTC
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Coding sequence (CDS) from alignment at C-linearis_contig105:179931..185651-

>mRNA_C-linearis_contig105.946.1 ID=mRNA_C-linearis_contig105.946.1|Name=mRNA_C-linearis_contig105.946.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at C-linearis_contig105:179931..185651- (Chordaria linearis ClinC8C monoicous)
ATGGAGACGAAACTGAAGGCGTTGGTGGAGAAGCTCAGCGACATCCACAC
CAAGATGGAGACGAAACTGAAGGCGTTGGTGGAGAAGCTCAGCGACATCC
ACACCAAGGACGCCTCCTCGAAGAGCCTGGTGTTCTCGCAGTACAACTGC
TCCCTCGAGTGGCTGAAGCACGCCCTGCCCAAGAAGGGCTTCGAGTTCCG
TACCCTCACCGGACAAATGTCCAGGAAGCAGCGCACCGCCTCGCTTCAGG
ACGCCTCCTCGAAGAGCCTGGTGTTCTCGCAGTACAACTGCTCCCTCGAG
TGGCTGAAGCACGCCCTGCCCAAGAAGGGCTTCGAGTTCCGTACCCTCAC
CGGACAAATGTCCAGGAAGCAGCGCACCGCCTCGCTTCAGGCGTTCGCCA
ACGATCCTCCAACGACGGTGTTTCTGCTGTCGGTCCGGGCTGGGGCTGTG
GGGATCAACCTCACTCAGGCCAACCACATCTTCCTGCTAGAGCCGGCGTT
CGCCAACGATCCTCCAACGACGGTGTTTCTGCTGTCGGTCCGGGCTGGGG
CTGTGGGGATCAACCTCACTCAGGCCAACCACATCTTCCTGCTAGAGCCG
CTGCTCAATCTGGCTTTGGAGAAGCAGGCGATTGGGAGGGTTCACCGCCT
CGGGCAGACTCGGCCGGTCACGGTACGGTGCTCTTCACTGCTCAATCTGG
CTTTGGAGAAGCAGGCGATTGGGAGGGTTCACCGCCTCGGGCAGACTCGG
CCGGTCACGGTACGGTGCTCTTCAGTGACCAAGCTGCTACTAGCGGACTC
TGTGGAGACGCGCATCCTTGCCATGCAGGAGCGCCAGGTCAGCGGCGGTG
GCTCGGCTGGATCATCATCCACAGCCCAACACGGGTGACCAAGCTGCTAC
TAGCGGACTCTGTGGAGACGCGCATCCTTGCCATGCAGGAGCGCCAGGTC
AGCGGCGGTGGCTCGGCTGGATCATCATCCACAGCCCAACACGGGATTCC
CGGCAGCCTTGCCAGGGACGTGGCGAAGCATCTCAAGGTGGAGGAGTACA
ACTCGCTGTTCGGGGTCGACCACACCGCAGGCGTCCCCGACAAAAAGCCC
AGCTGAGATTCCCGGCAGCCTTGCCAGGGACGTGGCGAAGCATCTCAAGG
TGGAGGAGTACAACTCGCTGTTCGGGGTCGACCACACCGCAGGCGTCCCC
GACAAAAAGCCCAGCTGA
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