mRNA_C-linearis_contig105.946.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI) HSP 1 Score: 295 bits (755), Expect = 4.110e-81 Identity = 168/303 (55.45%), Postives = 204/303 (67.33%), Query Frame = 1 Query: 1 QVCIAGALAKGDDDEGPCPKCKEPVKLDDLSPIGRGSGGDGST---------------------------------QTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVSGGGSAGS----SSTAQHGIPGSLARDVAKHLKVEEYNSLFGVDHTAGVP---DKKPS*TRRRP 789
Q CI+ L K DDEGPCP+CK V+L DL+ +G GS G + ++ G++METKLKALVEKL+ IH KD +SKSLVFSQ+N SLEWLK LPK+GF+FRTLTG MSR QRTA+L AFA DPPTTVFLLSVR+GAVGINLTQAN++FLLEPLLNLALEKQAIGRV+RLGQTRPVTV TKL+L DS+ETRILA+Q++Q + G ++ + SS++ G+ G++ARD AK LK+ EYN+LFGV AG D KP T P
Sbjct: 1009 QACISSVLTKSKDDEGPCPRCKTAVRLTDLTSVGGGSVATGXXXXXXXXKPEYXXXXXXXXXXXXXXXXXXXPXXXHSHSSSPGAGVVMETKLKALVEKLAGIHAKDPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV-----TKLVLKDSIETRILALQKKQATEGSASAAVGAPSSSSSDGVAGNIARDNAKDLKIGEYNALFGVSEGAGDSFGGDSKPHTTSSYP 1306
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE) HSP 1 Score: 287 bits (735), Expect = 2.670e-78 Identity = 156/281 (55.52%), Postives = 193/281 (68.68%), Query Frame = 1 Query: 1 QVCIAGALAKGDDDEGPCPKCKEPVKLDDLSPIG------------------------------------RGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVSGGGSAGSSSTAQHGIPGSLARDVAKHLKVEEYNSLFGV 735
Q CI+ L K +DD+GPCPKCK+ V+LDDL+ +G + G++METKLKALVE L+ IH KD +SKSLVFSQ+N SLEWLK LPK+GF+FRTLTG MSR QRTA+L AFA DPPTTVFLLSVR+GAVGINLTQAN++FLLEPLLNLALEKQA+GRV+RLGQTRPVTV TKL+L DS+ETRILA+Q++Q + G ++ + +GI G++ARD AK+LK++EYN+LFGV
Sbjct: 1042 QACISSVLTKKEDDQGPCPKCKKTVRLDDLTHVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPGTGVVMETKLKALVEMLAGIHAKDPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGSMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAVGRVYRLGQTRPVTV-----TKLVLKDSIETRILALQKKQATEGSASAAVGAGSNGIAGNIARDNAKNLKIDEYNALFGV 1317
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: D7G0T7_ECTSI (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T7_ECTSI) HSP 1 Score: 247 bits (630), Expect = 1.900e-72 Identity = 148/249 (59.44%), Postives = 166/249 (66.67%), Query Frame = 1 Query: 1 QVCIAGALAKGDDD-EGPCPKCKEPVKLDDLSPIGRGSGGDGSTQTGT-ADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVSGGGSAGSSS-TAQHGIPGSLARDVAKHLKVEEYNSLFGVD 738
+ CIAGALAKGDDD EGPCPKCK+ V L DL+PIG G G GS+ G +D PG++METKLKALVEKL+DI AFANDPPTTVFLLSVRAGAVGINLTQANH+FLLEP+LNLALEKQAIGRVHRLGQTRPVTV TKL+LADSVETRILAM++ Q GGGSAGSS AQ G GSLAR+ A+HLKV EY+ FG++
Sbjct: 28 EACIAGALAKGDDDDEGPCPKCKKTVTLGDLTPIGGGGGDFGSSAGGNGSDNRPGVMMETKLKALVEKLADIQAN-----------------------------------------------AFANDPPTTVFLLSVRAGAVGINLTQANHVFLLEPMLNLALEKQAIGRVHRLGQTRPVTV-----TKLVLADSVETRILAMRKMQARGGGSAGSSLFNAQGGPAGSLAREDARHLKVGEYDEFFGLN 224
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A835YWG4_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG4_9STRA) HSP 1 Score: 214 bits (544), Expect = 1.120e-53 Identity = 129/283 (45.58%), Postives = 171/283 (60.42%), Query Frame = 1 Query: 4 VCIAGALAKGDDDEGPCPKCKEPVKLDDLSPIGRGSG--------GDGSTQTGTADQSP------------------------------GILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVSGGGSAGSSSTAQHGIPGSLARDVAKHLKVEEYNSLFGVD 738
+CI + K D +G CPKCK+ V L+ + +G G+ G +T G A P G++ME+KLK LV L+ I KDA++K+LVFSQ+ +L +L+ LP+ GFEFRTLTG MSR+QRT +L+ F +DPPTT+FLLSVR+GA GINLT A+H+F+LEP LNLALE QAIGRVHRLGQTR V V KL + SVE+RI+AMQ + S + GS GS+++D AK L++++YN LF VD
Sbjct: 1247 LCITAHVTKKAD-KGTCPKCKKVVSLESIQLVGAGAXXXXXXXXEGSAATAGGGAPMGPNAGGVQGXXXXXXXXXXXXXXXXXDAPQQGGVVMESKLKVLVGMLAAIRGKDANAKALVFSQFTSTLRYLQRELPRHGFEFRTLTGDMSRRQRTKALEDFRSDPPTTIFLLSVRSGACGINLTAASHVFMLEPCLNLALEAQAIGRVHRLGQTRAV-----HVVKLYMEASVESRIIAMQTAK-SDRAAQGSDEDRPATAAGSISKDGAKELRIKDYNDLFAVD 1522
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S0GC86_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GC86_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.120e-47 Identity = 95/193 (49.22%), Postives = 128/193 (66.32%), Query Frame = 1 Query: 43 EGPCPKCKEPVKLDDLSPIGRGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVS 621
+GPCP C+ PVK+ L + S T + L +K LV +L I + +SKSLVFSQ+ +L+W++ LPK+GF FRTL+G MS +R +L+ F +DPPTTVFLLS+R+GAVGINLTQAN +F++EP LN ALE QAIGRVHRLGQ RPV V +L++ DS++TR++ ER+ S
Sbjct: 1 DGPCPVCRAPVKVSTLKRVLMSS-----TAAKEKNNEDTFLFRSKYLGLVTELEKIRDTEPNSKSLVFSQFTSTLKWMQEELPKRGFSFRTLSGDMSMPKRAQALREFQSDPPTTVFLLSMRSGAVGINLTQANRVFIMEPALNPALEAQAIGRVHRLGQNRPV-----EVIRLIIEDSIDTRLMKYLERKYS 183
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S2CG02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG02_9STRA) HSP 1 Score: 176 bits (447), Expect = 2.070e-47 Identity = 91/154 (59.09%), Postives = 117/154 (75.97%), Query Frame = 1 Query: 160 ILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQVS 621
++METKLKAL+ +L+ + KDA+SK L+FSQ+ +L WL+ LP G FRTLTG+M++KQR +L+ F DPPTTVFLLSVRAGAVGINLTQANH+F+LEP+LN ALE QA+GRVHR+GQ R V V TK ++ +SVE R+L + Q S
Sbjct: 5 VVMETKLKALMAELTKVRCKDATSKCLIFSQFQATLTWLQQMLPAHGCSFRTLTGKMTQKQRARALRDFQEDPPTTVFLLSVRAGAVGINLTQANHVFILEPILNPALELQAVGRVHRMGQQRHVYV-----TKFVMQNSVEERMLNLLNLQTS 153
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S4MXR8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXR8_9STRA) HSP 1 Score: 192 bits (487), Expect = 1.420e-46 Identity = 114/274 (41.61%), Postives = 163/274 (59.49%), Query Frame = 1 Query: 7 CIAGALAKGDDDEGPCPKCKEPVKLDDL--SPIGRGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQERQV-------------SGGGSAGS-------SSTAQHGIPG--------SLARDVAKHLKVEEYNSLFGVD 738
CI G L+ DD GPCP C+ VK+ L + + DG + A PG+ ++KL L+ +L I + + +KSLVFSQ+N +++W+K LPK GF+FRTL G M+ K R +L+ F +DPPTT+FLLS+RAGAVGINLTQAN +FL+EP +N ALE QAIGRVHRLGQ +PV + +L++ DS+E+R++ + E++ S GG G+ S A PG S+ +D A + V+E++ LFG +
Sbjct: 1262 CIEGILSAEDDSTGPCPICRSEVKMSKLRRAILPEPEEEDGGKKGKKAKAKPGVAFKSKLNVLLRELERIRSDEPDAKSLVFSQFNSTIKWMKAELPKHGFQFRTLDGSMNMKDRAKALREFQSDPPTTIFLLSMRAGAVGINLTQANRVFLMEPAMNPALEAQAIGRVHRLGQLKPV-----EIIRLVICDSLESRMVKLLEKKYGKKHVGEDGDKNDSSGGEEGNDDEDGAASEAAVKPAPGQGSDTAVGSITKDKAA-VTVDEFDLLFGCE 1529
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S2UI45_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI45_9STRA) HSP 1 Score: 176 bits (445), Expect = 6.220e-46 Identity = 91/201 (45.27%), Postives = 129/201 (64.18%), Query Frame = 1 Query: 7 CIAGALAKGDDDEGPCPKCKEPVKLDDLSPIGRGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRILAMQE 609
CI G + DD G CP+C + V + L G + D PGI+ ++K + L+ +L+ I ++ +KSLVFSQ+ +L W++ LPK GF+FRTL+G M +R +L+ F NDPPTT+FLLS+RAGA GINLTQAN +FL+EP +N ALE QAIGRV+RLGQ + V + ++L+ +SVETR+ + E
Sbjct: 21 CIEGVIYSKDDRSGNCPQCNQTVTIKTLQKAAMPDGNVSTPVVAAGD--PGIVFKSKFRRLLTELTRIRDEEPEAKSLVFSQFRSTLSWMQEELPKHGFQFRTLSGDMPMSKRACALRDFQNDPPTTIFLLSIRAGACGINLTQANRVFLMEPAMNPALEAQAIGRVYRLGQRKNV-----EIVRMLMTNSVETRLTKLIE 214
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A7S2JRT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRT6_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.050e-42 Identity = 90/197 (45.69%), Postives = 128/197 (64.97%), Query Frame = 1 Query: 7 CIAGALAKGDDDEGPCPKCKEPVKLDDLSPIGRGSGGDGSTQTGTADQSPGILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRIL 597
CI G + D GPCP C+ + L+ L + G + D SP + ++K + L+ +L I +D +KSL+FSQ+ +L+WL+ L K GF+FRTL+G M+ K R +L+ F DPPTTVFLLS+RAGAVGINLTQAN +F+LEP +N ALE QA+GRVHRLGQT+ V + +L++ +S+E R++
Sbjct: 459 CIEGVITAMDSSTGPCPICRREINLEMLRQVTFADNEVGDEENEGRDDSPDFVFKSKFEVLLRELRLIRVEDPEAKSLIFSQFKTTLKWLQTELVKHGFQFRTLSGDMTMKARAKALRDFQADPPTTVFLLSMRAGAVGINLTQANRVFILEPAINPALETQAVGRVHRLGQTKSV-----EIVRLVVKESIEERMI 650
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Match: A0A1E7F8K5_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F8K5_9STRA) HSP 1 Score: 161 bits (407), Expect = 5.400e-40 Identity = 84/146 (57.53%), Postives = 108/146 (73.97%), Query Frame = 1 Query: 160 ILMETKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTLTGQMSRKQRTASLQAFANDPPTTVFLLSVRAGAVGINLTQANHIFLLEPLLNLALEKQAIGRVHRLGQTRPVTVRCSSVTKLLLADSVETRIL 597
+K + L+++L I D SSKSLVFSQ+N +LE+L+ LPK GF+FRTL+G MS KQR +L+ F NDPPTTVFLLS+RAGAVGINLTQAN +FL+EP N ALE QAIGRVHRLGQ R V ++ +L++ +S E R++
Sbjct: 64 FTFRSKFRFLLQELEIIRDNDVSSKSLVFSQFNSTLEYLQTELPKHGFQFRTLSGSMSMKQRAKALRDFQNDPPTTVFLLSMRAGAVGINLTQANRVFLMEPSFNPALEAQAIGRVHRLGQKREV-----NILRLVIKNSFEDRMM 204 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.946.1 >prot_C-linearis_contig105.946.1 ID=prot_C-linearis_contig105.946.1|Name=mRNA_C-linearis_contig105.946.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=203bp METKLKALVEKLSDIHTKDASSKSLVFSQYNCSLEWLKHALPKKGFEFRTback to top mRNA from alignment at C-linearis_contig105:179931..185651- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.946.1 ID=mRNA_C-linearis_contig105.946.1|Name=mRNA_C-linearis_contig105.946.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5721bp|location=Sequence derived from alignment at C-linearis_contig105:179931..185651- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:179931..185651- >mRNA_C-linearis_contig105.946.1 ID=mRNA_C-linearis_contig105.946.1|Name=mRNA_C-linearis_contig105.946.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at C-linearis_contig105:179931..185651- (Chordaria linearis ClinC8C monoicous)back to top |