mRNA_C-linearis_contig104.919.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: D8LE99_ECTSI (ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE99_ECTSI) HSP 1 Score: 239 bits (610), Expect = 2.320e-78 Identity = 127/157 (80.89%), Postives = 140/157 (89.17%), Query Frame = 1 Query: 88 MFRPVQGLVLALVAYASTAFVVPSASQTW-AGRPSVTGARTFAKLHMAAGVAMPEIKTAGPSVGLVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 555
MFRP+Q L+LALVA ASTAFVVP+ W A RP+ R + L+MAAGVAMPEIKTAGPS+G+++KKEVSFET+IRPEDK+KVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQ ANDNGMA VGIWHQEMADAYSTSLKERGLIAETHPA+
Sbjct: 1 MFRPLQVLILALVASASTAFVVPA----WTAMRPAAASGRPISALNMAAGVAMPEIKTAGPSIGVLDKKEVSFETSIRPEDKYKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQ-ANDNGMAQVGIWHQEMADAYSTSLKERGLIAETHPAE 152
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A835ZJP8_9STRA (ATP-dependent Clp protease adaptor protein ClpS-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJP8_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.690e-26 Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 1 Query: 304 ETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 555
E P DKFKV+LFNDNGNTREYV+RSLVQV+G++E+ A+ IM A+ NGMALVGIW+ E A+AYS LK RGL++E P +
Sbjct: 51 EDQPSPADKFKVMLFNDNGNTREYVARSLVQVIGMTESDAYDIMTM-AHKNGMALVGIWNLERAEAYSDQLKTRGLVSEIFPVE 133
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S2V4Q9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Q9_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 5.170e-16 Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1 Query: 280 VEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIA 537
+EKK + +++LLFNDN NTREYV+R L +VGLSE AF IM + A+ NGMA+VG W E+A+AY+ SL GL +
Sbjct: 69 IEKKGLDNSYQPANGGDYQILLFNDNMNTREYVARCLCTIVGLSEGKAFEIMLE-AHKNGMAVVGSWRYELAEAYNESLNRHGLAS 153
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S2VY96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VY96_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 7.340e-15 Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 256 TAGPSVGLVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 555
+ G VGLVEKK + + D ++V ++ND NTRE+VSR LVQ+VGLSE A+ M Q A+ NG+A VG + E A+ Y +L E G++ + P D
Sbjct: 85 STGGGVGLVEKKAMK-DRERTGSDAWEVRIYNDVKNTREFVSRCLVQIVGLSETFAYQTMMQ-AHKNGLAAVGTYAFERAEMYHEALTENGIMCDMIPVD 182
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A0M0LSS8_9EUKA (ATP-dependent clp protease adaptor protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LSS8_9EUKA) HSP 1 Score: 77.0 bits (188), Expect = 1.510e-14 Identity = 64/156 (41.03%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 109 LVLALVAYASTAFVVPSASQTWAGRPSVTGA---RTFAKLHMAAGVAMPEIKTAGPSVG---LVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVV-GLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 555
+VL + +++A VVP+ + P VT A RT L A VAM P V L K S + N + + K+KVLLFNDN N REYV+R LV + G+S+A A+ +MQ+ A+ GMA+VG+W E+A+AY LK GLIA D
Sbjct: 9 VVLCGLLGSASALVVPARALM----PEVTPASASRTVLSLRTAR-VAMQVDAPVRPKVDVPQLAPTKPSSDKDNEKAK-KYKVLLFNDNVNRREYVARILVGAIPGMSQADAYLVMQK-AHKQGMAVVGVWVFEVAEAYCDKLKSGGLIASVTEED 157
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S2R9I8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9I8_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.710e-14 Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 328 KFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 555
+++VLLFND NT+EYV+R L+ V GLSE AF M Q A+ NGM L+GIW +E+A+ ++ +L E GL+ P D
Sbjct: 92 RYRVLLFNDPMNTKEYVARQLMTVAGLSENNAFDCMMQ-AHRNGMGLIGIWMREVAEHHTQTLTEAGLLVSMMPDD 166
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S4HUU8_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HUU8_9EUKA) HSP 1 Score: 74.7 bits (182), Expect = 1.200e-13 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 328 KFKVLLFNDNGNTREYVSRSLVQVV-GLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 555
K+K+LLFNDN N REYV+R LV V S+A A+ +MQ+ A+ NGMA+VG+W E+A+AY LK+ GLIA D
Sbjct: 83 KWKLLLFNDNVNKREYVARVLVSSVPDFSQADAYKVMQK-AHQNGMAVVGVWVFEVAEAYCDKLKQGGLIASVTEED 158
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A6U6GRI4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6GRI4_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.490e-13 Identity = 42/119 (35.29%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 223 MAAGVAMPEIKTAGPSVGLVEKKEVSFETNIRPE--------DKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 555
M A + +KT G ++++ +V + PE + ++V ++ND NTRE+V+R LVQ+VGL+E TA+ M A+ NG+A+VG + E A+ Y +LK+ G+I + P D
Sbjct: 65 MPATIERAPVKTGGGGPAVLDRPKVEERQSKSPEKERENVGNEAWEVRIYNDGMNTREFVARCLVQIVGLTEMTAYQTMMD-AHQNGIAVVGRYVYERAEMYHEALKKNGIICDLVPVD 182
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S4EG34_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG34_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 6.510e-13 Identity = 42/126 (33.33%), Postives = 77/126 (61.11%), Query Frame = 1 Query: 202 RTFAKLHMAAGVAMPEIKTAGPSVGLVEKKEVSFETNIRPE--------DKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 555
RT + ++A +A ++ AGP+V V++ V + N+ P + ++V ++ND NTRE+V+RSLVQ+ G+ E TA+ M A+ NG+A VG++ E+A+ Y+ +++G++++ P D
Sbjct: 35 RTSSHSNVAMKMAAGTVERAGPAV--VDRPAV--KKNLAPSKQRHQEGGETWEVRIYNDGDNTREHVARSLVQITGMGEMTAYQTMMT-AHQNGIASVGLFAFEVAEVYNEGFRKQGIVSDIIPID 155
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A8J5XX93_DIALT (ClpS domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XX93_DIALT) HSP 1 Score: 72.4 bits (176), Expect = 6.820e-13 Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 1 Query: 235 VAMPEIKTAGPSVGLVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVV-GLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIA 537
VAM ++ T PSV L K S + N + + K+K+LLFND N RE+V+R L V+ ++E TA+ +MQ+ A+ G A+ G+W E+A+AY L +GL A
Sbjct: 39 VAMADVLTRPPSVQLAPTKPSSDQQNAKGK-KYKLLLFNDAVNKREFVARVLTSVIPDMTEPTAYTVMQK-AHTAGFAVCGVWMFELAEAYCDGLTSQGLTA 138 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.919.1 >prot_C-linearis_contig104.919.1 ID=prot_C-linearis_contig104.919.1|Name=mRNA_C-linearis_contig104.919.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=186bp NRSSSSPHHVSANSTTPSTLHAYTRTYTVMFRPVQGLVLALVAYASTAFVback to top mRNA from alignment at C-linearis_contig104:511482..515634- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.919.1 ID=mRNA_C-linearis_contig104.919.1|Name=mRNA_C-linearis_contig104.919.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4153bp|location=Sequence derived from alignment at C-linearis_contig104:511482..515634- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:511482..515634- >mRNA_C-linearis_contig104.919.1 ID=mRNA_C-linearis_contig104.919.1|Name=mRNA_C-linearis_contig104.919.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at C-linearis_contig104:511482..515634- (Chordaria linearis ClinC8C monoicous)back to top |