mRNA_C-linearis_contig104.914.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	mitochondrion
Ec32 ortholog description	Dimeric alpha-beta barrel
Ec32 ortholog	Ec-00_001090.1
Exons	5
Model size	1035
Cds size	681
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927389.2947598-UTR-C-linearis_contig104:488668..488960	1622927389.2947598-UTR-C-linearis_contig104:488668..488960	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 488669..488960 -
1690879671.3383253-UTR-C-linearis_contig104:488668..488960	1690879671.3383253-UTR-C-linearis_contig104:488668..488960	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 488669..488960 -
1622927389.3705218-UTR-C-linearis_contig104:491160..491222	1622927389.3705218-UTR-C-linearis_contig104:491160..491222	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 491161..491222 -
1690879671.3981419-UTR-C-linearis_contig104:491160..491222	1690879671.3981419-UTR-C-linearis_contig104:491160..491222	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 491161..491222 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927389.3069715-CDS-C-linearis_contig104:488960..489089	1622927389.3069715-CDS-C-linearis_contig104:488960..489089	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 488961..489089 -
1690879671.349715-CDS-C-linearis_contig104:488960..489089	1690879671.349715-CDS-C-linearis_contig104:488960..489089	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 488961..489089 -
1622927389.3197603-CDS-C-linearis_contig104:489462..489585	1622927389.3197603-CDS-C-linearis_contig104:489462..489585	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 489463..489585 -
1690879671.3578637-CDS-C-linearis_contig104:489462..489585	1690879671.3578637-CDS-C-linearis_contig104:489462..489585	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 489463..489585 -
1622927389.3310933-CDS-C-linearis_contig104:489927..490013	1622927389.3310933-CDS-C-linearis_contig104:489927..490013	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 489928..490013 -
1690879671.3665884-CDS-C-linearis_contig104:489927..490013	1690879671.3665884-CDS-C-linearis_contig104:489927..490013	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 489928..490013 -
1622927389.346296-CDS-C-linearis_contig104:490373..490561	1622927389.346296-CDS-C-linearis_contig104:490373..490561	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 490374..490561 -
1690879671.376118-CDS-C-linearis_contig104:490373..490561	1690879671.376118-CDS-C-linearis_contig104:490373..490561	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 490374..490561 -
1622927389.3560905-CDS-C-linearis_contig104:491005..491160	1622927389.3560905-CDS-C-linearis_contig104:491005..491160	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 491006..491160 -
1690879671.389241-CDS-C-linearis_contig104:491005..491160	1690879671.389241-CDS-C-linearis_contig104:491005..491160	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 491006..491160 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig104.914.1	prot_C-linearis_contig104.914.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig104 488961..491160 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig104:488669..491222-
coding sequence from alignment at C-linearis_contig104:488669..491222-

protein sequence of mRNA_C-linearis_contig104.914.1

>prot_C-linearis_contig104.914.1 ID=prot_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=227bp
MASFLQRTASQGYRGGSFLRHSGRQRAALSFHRNGGTTPVVESDEDLQPN
WSGLERRLKSRVPRERGRGVPEGRTNLKPSEEDFWHEAGVYDYSSSSDAS
TRAPPKVSTREPSCARLSTIKVGTDNIPRVVSLYKTSVAPVLQVKGFCGA
QLFSDRAAGTVQSLTMWESWADLETAVGDKRYAKVMRSLEGLIEAPPDVI
DTEVACSILPTTGGGDVSSDEPEEVA*

mRNA from alignment at C-linearis_contig104:488669..491222-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig104.914.1 ID=mRNA_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2554bp|location=Sequence derived from alignment at C-linearis_contig104:488669..491222- (Chordaria linearis ClinC8C monoicous)
CTCTCTCCTCTCTCCCTCGTGCAATCCAGGCAGCCAGGACAGGTTCATCG
GGTGCGCACACCATGGCCTCTTTTCTGCAGAGGACTGCCTCGCAAGGGTA
CCGTGGCGGGTCTTTCCTGCGACATAGTGGAAGGCAAAGGGCTGCCCTTT
CCTTCCACCGCAATGGCGGCACGACTCCCGTAGTGGAGTCTGACGAGGAC
CTGCAACCCAATTGGAGGTGAGGTAAACGGTATCAGTGGGTTGCCGCCCA
CTGCTGCTGTGTTGGGGACTTGCTGTATCACACCAAAACAACGCAGCAGC
TACATACACATGCGGAGATCTGTCGTAGGTTGTTACCAATTACCAATTGA
TGTTGAACATCCATTCAGCCGCATAAATTATACGAGATTATCGAGTTTGT
TTTGAGGTGGTGTGCACAACACCTCCGACTTGCTTGACCGTGTGTGTGAG
CAATAGGTCTGTCGCTGTATGGCGTTACTCGAAAGCTGTGTCACTACAGC
AGTACGTCGCCCTTCGGCACTGCCTTTAGCTGCCTGTGGGCTGTGGCATG
TCTTATCTGCCAAGCAAGGTGTAGAAAATCAGGGGCGGCAGAGTAAACTC
AACCTGTACGTGGGGCGCTTGTCAAAGCTCTCCTCCTCCGCATTGTTTTG
CTCTCTGGCAGTGGATTAGAGCGAAGGCTGAAGTCGCGCGTTCCCCGAGA
AAGGGGAAGAGGCGTTCCAGAAGGGCGGACAAACCTAAAGCCGTCCGAGG
AGGACTTTTGGCACGAAGCGGGAGTCTACGACTACTCGAGCTCCAGCGAT
GCCTCGACGAGGGCGCCTCCGAAAGTTTCCACGAGAGAGCCCAGTTGTGG
TGAGTGCTCCCCCCGCCTCTGCTGGCTGTCTCCCTCAAAACGGTCGTTCC
GTCTGTTCACGAGCCGTCCGCTCTTCCTGGTTCTCGTTCTTAGATGCTGG
TACGCTCGTAGCCTACCTTTTGTTCGTTCAATTGGTTGGGGCGGTCGCGT
GTTATGTAGTTTCTCATCGCCCTTTTCTGACGTGTCATCTGCTGTGACGG
GCAGTGGAGGCGACATCACTCGGACTTCTTCCTGCATAGCCCAGTGAACC
CCCCACTTGTACATACGCTCTCGGCTGATCACAATCACAACGTTGTCTGT
CGCCCCATGCCGTACCTGTCGATTCATTGCTCGGCCCAATCGAACAATTT
TTACCTCAGCGCGGCTATCGACGATCAAGGTCGGCACCGACAACATCCCC
CGGGTGGTTTCCCTGTACAAAACCTCCGTTGCACCAGTTTTGCAGGTCGG
TGGAACTACCTCGCCTGGCCTTGTCAGGATTTTTCGCTGTTCGCCGCACG
CCCCGCTGTTGTTCAAGTCGATTTTCAAGCACAGCGCATGTACGTAGTAG
TTTGAGCGCGGATTGGTACCCAACTATCTTTGGAAGTTCGCTTTAGGCAG
TCCGCGCCCCCAGGTTGATGTAAGGCCTGGCTCTTCTCTTTCTTGGTGAA
GGGGTGCGTTTTTCAAGGCTTGTGAAGGGTGCGTGCATAACAACTCCGAC
TGGATAATAACCATTTGTCGTGGCATTGGTTTCACCAGGGGGGGTTGGTT
GCGCCGCGCACTGAACGAGCTCTCCCGCCCGCTACAGGTGAAGGGCTTCT
GTGGGGCGCAGTTGTTTTCGGACCGGGCGGCGGGGACGGTGCAGTCCCTT
ACAATGTGGGAGTCATGGGCAGACCTTGAGACTGCCGTGGGCGACAAACG
CTACGCTAAGGTGATGACTTCCCAGAACGGCCCATGAGCGATATCTTATT
GTTGTAGACTCTTGAGGTCGCAGACGTATCTACGCTGTTGGAGGCTTGGG
ACTTCGCGCGAAAGCGAGGAAGCACTCGACAAATTTGGTGCTCCGGGAGC
GAGTTGAGTCTTACCGCCGCAGCCGCTTTTTCGCGTGTGTGTGTTGTACC
CCTTCACTCACGCCACGCGCATCGTGTATCGATGCTGGGTGTGTCTCACC
GAACTCCAATATATGTTGTCACATAAGTTTGCAGTATCAAGATTTTCTCA
AATGCGAGACAAACAGTTAATTAAAGCCCCACCCAATCCTCACCCTTGAT
TGGCTGCCTTCGTTTTTTTGCTGTGCTTCGCAGGTGATGCGCTCGTTGGA
GGGGCTGATCGAAGCTCCACCGGATGTAATAGACACCGAAGTAGCGTGTT
CCATTCTTCCCACCACCGGGGGCGGAGACGTGTCAAGCGACGAACCCGAA
GAGGTGGCATGAGCACTTGCATGCATGTCGCCTCTCGTGTTGTTGTTTGA
GTCTCGAGGACGGGTGTAGGCAGCTGTAGGATTGAAGGCGGTACAAAGTG
ATGTTAAAAAGCGTGACTGCGAGATGGAGGCACTGACGCATATGTTTCTT
TTGTGTGCTGGCGGTGGCGCCGACATTGGTCGATACTGCTGTTCTCCGGT
ACCATACAATATACGGTAGGTGGAGACATACCCTCCTGTGTGACCCCGGA
TGGTAGCCTAGCTAGTTGTAGTGAAGAGGAGGAGGCAGGCTACGAAAAAA
CATT

Coding sequence (CDS) from alignment at C-linearis_contig104:488669..491222-

>mRNA_C-linearis_contig104.914.1 ID=mRNA_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at C-linearis_contig104:488669..491222- (Chordaria linearis ClinC8C monoicous)
ATGGCCTCTTTTCTGCAGAGGACTGCCTCGCAAGGGTACCGTGGCGGGTC
TTTCCTGCGACATAGTGGAAGGCAAAGGGCTGCCCTTTCCTTCCACCGCA
ATGGCGGCACGACTCCCGTAGTGGAGTCTGACGAGGACCTGCAACCCAAT
TGGAGATGGCCTCTTTTCTGCAGAGGACTGCCTCGCAAGGGTACCGTGGC
GGGTCTTTCCTGCGACATAGTGGAAGGCAAAGGGCTGCCCTTTCCTTCCA
CCGCAATGGCGGCACGACTCCCGTAGTGGAGTCTGACGAGGACCTGCAAC
CCAATTGGAGTGGATTAGAGCGAAGGCTGAAGTCGCGCGTTCCCCGAGAA
AGGGGAAGAGGCGTTCCAGAAGGGCGGACAAACCTAAAGCCGTCCGAGGA
GGACTTTTGGCACGAAGCGGGAGTCTACGACTACTCGAGCTCCAGCGATG
CCTCGACGAGGGCGCCTCCGAAAGTTTCCACGAGAGAGCCCAGTTGTGTG
GATTAGAGCGAAGGCTGAAGTCGCGCGTTCCCCGAGAAAGGGGAAGAGGC
GTTCCAGAAGGGCGGACAAACCTAAAGCCGTCCGAGGAGGACTTTTGGCA
CGAAGCGGGAGTCTACGACTACTCGAGCTCCAGCGATGCCTCGACGAGGG
CGCCTCCGAAAGTTTCCACGAGAGAGCCCAGTTGTGCGCGGCTATCGACG
ATCAAGGTCGGCACCGACAACATCCCCCGGGTGGTTTCCCTGTACAAAAC
CTCCGTTGCACCAGTTTTGCAGCGCGGCTATCGACGATCAAGGTCGGCAC
CGACAACATCCCCCGGGTGGTTTCCCTGTACAAAACCTCCGTTGCACCAG
TTTTGCAGGTGAAGGGCTTCTGTGGGGCGCAGTTGTTTTCGGACCGGGCG
GCGGGGACGGTGCAGTCCCTTACAATGTGGGAGTCATGGGCAGACCTTGA
GACTGCCGTGGGCGACAAACGCTACGCTAAGGTGAAGGGCTTCTGTGGGG
CGCAGTTGTTTTCGGACCGGGCGGCGGGGACGGTGCAGTCCCTTACAATG
TGGGAGTCATGGGCAGACCTTGAGACTGCCGTGGGCGACAAACGCTACGC
TAAGGTGATGCGCTCGTTGGAGGGGCTGATCGAAGCTCCACCGGATGTAA
TAGACACCGAAGTAGCGTGTTCCATTCTTCCCACCACCGGGGGCGGAGAC
GTGTCAAGCGACGAACCCGAAGAGGTGGCATGAGTGATGCGCTCGTTGGA
GGGGCTGATCGAAGCTCCACCGGATGTAATAGACACCGAAGTAGCGTGTT
CCATTCTTCCCACCACCGGGGGCGGAGACGTGTCAAGCGACGAACCCGAA
GAGGTGGCATGA

mRNA_C-linearis_contig104.914.1 (mRNA) Chordaria linearis ClinC8C monoicous

ZOOM

x 1

POSITION

0