Homology
BLAST of mRNA_C-linearis_contig104.909.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE) HSP 1 Score: 162 bits (410), Expect = 2.040e-41 Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 1 Query: 1 VAYAGSTSKKIYTVDTRDPMSVVAKWDCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQV 240
VAYAGSTSKKIYTVDTRDPM VVAKW+CGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQ
Sbjct: 273 VAYAGSTSKKIYTVDTRDPMGVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQA 352
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Exons | 2 |
| Model size | 1054 |
| Cds size | 618 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927381.8622549-UTR-C-linearis_contig104:452760..452889 | 1622927381.8622549-UTR-C-linearis_contig104:452760..452889 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 452761..452889 + |
| 1690879666.9241233-UTR-C-linearis_contig104:452760..452889 | 1690879666.9241233-UTR-C-linearis_contig104:452760..452889 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 452761..452889 + |
| 1622927381.8732102-UTR-C-linearis_contig104:453512..453817 | 1622927381.8732102-UTR-C-linearis_contig104:453512..453817 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 453513..453817 + |
| 1690879666.9327211-UTR-C-linearis_contig104:453512..453817 | 1690879666.9327211-UTR-C-linearis_contig104:453512..453817 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 453513..453817 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927381.8832712-CDS-C-linearis_contig104:453817..454435 | 1622927381.8832712-CDS-C-linearis_contig104:453817..454435 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 453818..454435 + |
| 1690879666.9405632-CDS-C-linearis_contig104:453817..454435 | 1690879666.9405632-CDS-C-linearis_contig104:453817..454435 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 453818..454435 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.909.1 >prot_C-linearis_contig104.909.1 ID=prot_C-linearis_contig104.909.1|Name=mRNA_C-linearis_contig104.909.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=206bp
MLPCHAQRDLATLRCKQPRGTQSVVLCLMRGADGTLGTLPSCGSCSTLLK
AKSLEILGTLQNKQNQGSRCTLSPFLALALTLTLTHLTTFCLWCFLSSPL
PPLPSPFYAMLWYAMVCYAMLLPVVFPFGGVPGPVVRPRRSVLCFFLSLL
LHEHEPTTTTTTTTTTTKKASPPDAGRQDEEGLLLAANCFDNTLRVFHRR
FLNSQP back to topmRNA from alignment at C-linearis_contig104:452761..454435+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig104.909.1 ID=mRNA_C-linearis_contig104.909.1|Name=mRNA_C-linearis_contig104.909.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1675bp|location=Sequence derived from alignment at C-linearis_contig104:452761..454435+ (Chordaria linearis ClinC8C monoicous)
GTGGCTTACGCGGGGTCGACGAGCAAGAAGATTTATACGGTGGACACGCG
GGACCCGATGTCGGTGGTCGCGAAGTGGGACTGCGGGGCGTTCGTCAACT
CTCTGCATGTTTATTCGGACGGGAGTAAGGTGAGATTGGCCAAGCTTTTT
GAGATGCGATAAGATGAGTTGAGGTGAAGCAAAGTATGGCAAGGTAGGGC
GAGGTGAGCCAACGCAAGCTTTAAGATGTACGTACGATCAGATATGGCAG
GGCAAGGTGGTGAGATAAGGTAAGGCACGCTTGAGACACGGTAAAAGGCA
AGGTGGTGAGGTAAGGTGAGGTAAGGCGAGGTACGGTGGACAGACAGGTG
GCGTGGGGAGCTGCAGTGTTGTTGTTATTGTTGTTGACGTTGAACATGAT
TCTGATGGCGGCGCAGGTTTGTTTGCGTCGAGAATTTAACACCGTCCCGA
CTGGCTGCTACTGGCGACCTCACATCCCGCGCTTGTTCCAACCAGCGGGA
TACATCACAAGTTACGCGACCTGCGTTTCATTTACACGTTTTCCAATGGC
CGATTCGATTGCGGCGTAACGCAATTATTGTTGTTGATATTTATGATGCA
GTTTTTTTTTTCAGAAAACACAAGACGTCCCGACTGGCTAACAGCTGCTG
GCCACCTAACACCCCGTGCCGATTCCCAGCCAGCGGGACAACATCACACG
ACACCGTGACAACGGTCGACTCAATTGCGGCGCAACTCGATTCAATTCGC
AGGTGGTCTCGGCAGACGCGAGCGGCAAGATCTTGACGTGGGATACCCGG
ACCGGGGGCGTCGTGGACTCGTACAGCCTTGAGGACCCCATACACATCTC
ACACATTCAGGTGCGGGGCCGCCGTTGCCCGTGTGCATGCGCCGACGGGA
CGCCGGGACAGCCAAAGCGTGGATGGCATGGTGGCGCACGTAAAACGGAC
TCGGAAGATCACATGATACTTCGAAGTATGGCATTTGTAGAGAGTCATTC
CGAGCCTCGGTGGTGCCGCCGGGAACGAGGGAAGCCAAAAACGTTGTGGT
GCATGCCATGCTGCCATGCCATGCCCAACGTGACCTCGCAACGCTTCGCT
GCAAGCAACCGAGGGGCACGCAGAGTGTAGTGTTGTGTTTGATGAGGGGG
GCGGATGGGACGCTTGGGACGCTTCCGAGCTGTGGCAGTTGCTCGACGCT
ATTAAAAGCGAAATCACTGGAAATCCTCGGCACCCTCCAAAACAAACAAA
ACCAAGGCTCTCGGTGCACACTCTCCCCGTTCCTAGCCCTAGCCCTAACC
CTAACCCTAACCCACCTGACCACGTTTTGTCTCTGGTGTTTTCTCTCCTC
GCCCTTGCCTCCCCTCCCCTCGCCCTTCTATGCGATGCTATGGTATGCTA
TGGTATGCTATGCTATGCTTCTCCCCGTTGTTTTCCCATTTGGTGGCGTT
CCTGGTCCTGTCGTTCGTCCGCGACGTTCTGTTTTGTGCTTCTTCCTTTC
TCTCCTCCTACACGAACACGAACCAACAACGACAACGACGACGACGACGA
CGACAACAAAAAAGGCTTCGCCCCCCGATGCGGGGCGGCAGGACGAGGAG
GGCCTCCTGCTCGCCGCCAACTGCTTCGACAACACCCTCCGGGTCTTCCA
CCGCCGCTTCCTGAACTCCCAGCCG back to topCoding sequence (CDS) from alignment at C-linearis_contig104:452761..454435+ >mRNA_C-linearis_contig104.909.1 ID=mRNA_C-linearis_contig104.909.1|Name=mRNA_C-linearis_contig104.909.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at C-linearis_contig104:452761..454435+ (Chordaria linearis ClinC8C monoicous)
ATGCTGCCATGCCATGCCCAACGTGACCTCGCAACGCTTCGCTGCAAGCA
ACCGAGGGGCACGCAGAGTGTAGTGTTGTGTTTGATGAGGGGGGCGGATG
GGACGCTTGGGACGCTTCCGAGCTGTGGCAGTTGCTCGACGCTATTAAAA
GCGAAATCACTGGAAATCCTCGGCACCCTCCAAAACAAACAAAACCAAGG
CTCTCGGTGCACACTCTCCCCGTTCCTAGCCCTAGCCCTAACCCTAACCC
TAACCCACCTGACCACGTTTTGTCTCTGGTGTTTTCTCTCCTCGCCCTTG
CCTCCCCTCCCCTCGCCCTTCTATGCGATGCTATGGTATGCTATGGTATG
CTATGCTATGCTTCTCCCCGTTGTTTTCCCATTTGGTGGCGTTCCTGGTC
CTGTCGTTCGTCCGCGACGTTCTGTTTTGTGCTTCTTCCTTTCTCTCCTC
CTACACGAACACGAACCAACAACGACAACGACGACGACGACGACGACAAC
AAAAAAGGCTTCGCCCCCCGATGCGGGGCGGCAGGACGAGGAGGGCCTCC
TGCTCGCCGCCAACTGCTTCGACAACACCCTCCGGGTCTTCCACCGCCGC
TTCCTGAACTCCCAGCCGATGCTGCCATGCCATGCCCAACGTGACCTCGC
AACGCTTCGCTGCAAGCAACCGAGGGGCACGCAGAGTGTAGTGTTGTGTT
TGATGAGGGGGGCGGATGGGACGCTTGGGACGCTTCCGAGCTGTGGCAGT
TGCTCGACGCTATTAAAAGCGAAATCACTGGAAATCCTCGGCACCCTCCA
AAACAAACAAAACCAAGGCTCTCGGTGCACACTCTCCCCGTTCCTAGCCC
TAGCCCTAACCCTAACCCTAACCCACCTGACCACGTTTTGTCTCTGGTGT
TTTCTCTCCTCGCCCTTGCCTCCCCTCCCCTCGCCCTTCTATGCGATGCT
ATGGTATGCTATGGTATGCTATGCTATGCTTCTCCCCGTTGTTTTCCCAT
TTGGTGGCGTTCCTGGTCCTGTCGTTCGTCCGCGACGTTCTGTTTTGTGC
TTCTTCCTTTCTCTCCTCCTACACGAACACGAACCAACAACGACAACGAC
GACGACGACGACGACAACAAAAAAGGCTTCGCCCCCCGATGCGGGGCGGC
AGGACGAGGAGGGCCTCCTGCTCGCCGCCAACTGCTTCGACAACACCCTC
CGGGTCTTCCACCGCCGCTTCCTGAACTCCCAGCCG back to top
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