Homology
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match:
D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)
HSP 1 Score: 174 bits (440), Expect = 1.240e-46
Identity = 91/164 (55.49%), Postives = 110/164 (67.07%), Query Frame = 2
Query: 206 SCSSGRIGASPGLNGVGKPFNSGAGAAARDFSREGAGKKYYGLHVDVPMIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVSTKVYNETERKLAKSNQ 697
+ S + + PG VGKPFNSG GA ARDFS EGA K+YGLH+D+P LAA+L LVQ DGSL K PLC T+V P + G TKG+ FGL ++G+L++GVHN N V GGTIPVTT PPY VP FAIAPL AG+ VS K +N+ ER AK N+
Sbjct: 377 AASQKALNSGPGYGAVGKPFNSGNGATARDFSAEGANDKWYGLHLDIPTRDLAAKLRLLVQPDGSL-----KDAPLCDTEVNPDHPGLTKGRSTFGLDREGALIMGVHNGQSLNRCVGGGTIPVTTAAPPYRVPHFAIAPLLAGKIVSNKTHNKRERTRAKLNE 535
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match:
D8LKS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS4_ECTSI)
HSP 1 Score: 148 bits (373), Expect = 1.620e-39
Identity = 88/161 (54.66%), Postives = 102/161 (63.35%), Query Frame = 2
Query: 197 GYPSCSSGRIGASPGLNGVGKPFNSGAGAAARDFSREGAGKKYYGLHVDVPMIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVSTKVYNETERK 679
G + S I + G N G GAG AARDFS EGAG+KY+GL + +P KLAA L RLV+EDGSLLE L PLC DV+PGY G K KG FGL +G +VL VHNSNKPN VS G IPVTT+ PP+ VPAFAI P RAG+ + N K
Sbjct: 86 GQSTFRSTGIDSGGGDNQTGSAGWCGAGRAARDFSAEGAGEKYFGLRLKIPADKLAATLQRLVEEDGSLLEP---LPPLCGIDVSPGYPGVIKAKGTFGLD-EGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFKVPAFAIGPPRAGKLMLRNQNNANALK 242
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match:
A0A6H5JI61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI61_9PHAE)
HSP 1 Score: 85.5 bits (210), Expect = 1.620e-15
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 2
Query: 437 STDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVSTKVYNETERK 679
S PGY G T+ KG+FGL +G +VL VHNSNKPN VS G IPVTT+ PP+ VPAFAI PLRAG+ + N K
Sbjct: 214 SDTQTPGYPGVTRAKGKFGLD-EGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFTVPAFAIGPLRAGKVIIRNQSNANALK 293
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match:
D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI)
HSP 1 Score: 67.8 bits (164), Expect = 4.780e-9
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 2
Query: 248 GVGKPFNSGAGAAARDFSREGAGKKYYGLHVDVPMIKLAAELARLVQEDGSLLE 409
GVGKP NSG G AARDFS EG+G++YYGLH+ +P L A+L LVQ DGSL E
Sbjct: 386 GVGKPSNSGDGHAARDFSEEGSGERYYGLHLALPTKDLRAQLPLLVQPDGSLKE 439
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 1.24e-46 / Id = 55.49 Expect = 1.62e-39 / Id = 54.66 Expect = 1.62e-15 / Id = 55.56 Expect = 4.78e-9 / Id = 64.81 Sequence D7G8P5_ECTSI D8LKS4_ECTSI A0A6H5JI61_9PHAE D8LFC5_ECTSI
Match Name E-value Identity Description
D7G8P5_ECTSI 1.240e-46 55.49 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D8LKS4_ECTSI 1.620e-39 54.66 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5JI61_9PHAE 1.620e-15 55.56 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LFC5_ECTSI 4.780e-9 64.81 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 920 Cds size 354 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927386.7947857-UTR-C-linearis_contig104:350517..350866 1622927386.7947857-UTR-C-linearis_contig104:350517..350866 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 350518..350866 + 1690879669.8596382-UTR-C-linearis_contig104:350517..350866 1690879669.8596382-UTR-C-linearis_contig104:350517..350866 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 350518..350866 + 1622927386.8232145-UTR-C-linearis_contig104:351220..351437 1622927386.8232145-UTR-C-linearis_contig104:351220..351437 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 351221..351437 + 1690879669.8787203-UTR-C-linearis_contig104:351220..351437 1690879669.8787203-UTR-C-linearis_contig104:351220..351437 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 351221..351437 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927386.811068-CDS-C-linearis_contig104:350866..351220 1622927386.811068-CDS-C-linearis_contig104:350866..351220 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 350867..351220 + 1690879669.8707738-CDS-C-linearis_contig104:350866..351220 1690879669.8707738-CDS-C-linearis_contig104:350866..351220 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 350867..351220 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.896.1
>prot_C-linearis_contig104.896.1 ID=prot_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
MIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLT back to top mRNA from alignment at C-linearis_contig104:350518..351437+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.896.1 ID=mRNA_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=920bp|location=Sequence derived from alignment at C-linearis_contig104:350518..351437+ (Chordaria linearis ClinC8C monoicous)ACCCTTCAAATGCAATGCTTATGTTGTTGTTTTTGTCGTCGCCATGAGCT
CTGCTTCTTTCATAACGCCCACATTAGTCGAATACATACGTAAATATACC
ATAACCTGTTCACGGTGTACGATGCCACAAAATGCGGGCATTTGACCCTT
TGAGTGAAATGGCGCTTGACGCGGACAACAAGTTAGACCTCACGTCGGTT
ACCCGTCCTGTTCATCAGGTAGAATCGGTGCTTCTCCCGGCCTCAATGGA
GTCGGCAAGCCGTTTAACAGCGGCGCCGGGGCCGCCGCGCGGGACTTCAG
CCGCGAGGGTGCGGGCAAGAAGTACTACGGACTCCACGTGGATGTTCCG A
TGATAAAACTCGCAGCGGAACTGGCACGCTTGGTGCAGGAGGACGGGAGT
CTGCTCGAAGAAGAAGGAAAACTGCTCCCGCTCTGTAGCACGGACGTCGC
ACCCGGCTACCGCGGCCGCACCAAGGGGAAAGGGCGATTTGGCCTGACCA
AGGACGGCAGCCTAGTGTTGGGCGTCCACAACAGCAACAAGCCCAACTCG
TTCGTGAGCGGGGGAACTATCCCCGTCACGACCAAAGGGCCGCCCTACGC
GGTACCAGCCTTCGCGATCGCTCCCCTGCGGGCGGGCAGGTTTGTGAGTA
CCAAGGTCTACAATGAGACGGAGAGGAAGCTCGCGAAGTCGAACCAGGGG
TAG ACGGTGGCGTGTTCCCGAGCTACTACGCGCATCGCGTGGCCCCGGAG
ATTCAGTGGCATGTGTGGGTATTGTGATAGTCACCTACCCCATCACTTTT
GCTCCGGGTATGGGGTACAAAGAGAGAGAGAGAGTTTCAACTTGAATGTA
TGTAGACTATTATGATACGTATCTCGTCATCAATTTTTCCATTGCGTAGA
TTTTACAAAGTAGTAGGTCG back to top Coding sequence (CDS) from alignment at C-linearis_contig104:350518..351437+
>mRNA_C-linearis_contig104.896.1 ID=mRNA_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig104:350518..351437+ (Chordaria linearis ClinC8C monoicous) back to top